Comparative analysis of the diversity of aerobic spore-forming bacteria in raw milk from organic and conventional dairy farms

Systematic and Applied Microbiology - Tập 31 - Trang 126-140 - 2008
An Coorevits1,2, Valerie De Jonghe3, Joachim Vandroemme4, Rieka Reekmans1, Jeroen Heyrman1, Winy Messens3, Paul De Vos1, Marc Heyndrickx3
1Laboratory of Microbiology (LM-UGent), Department of Biochemistry, Physiology and Microbiology, Ghent University, K.L. Ledeganckstraat 35, 9000 Ghent, Belgium
2Laboratory of Biochemistry and Brewing, Faculty of Applied Engineering Sciences, University College Ghent, Voskenslaan 270, 9000 Ghent, Belgium
3Institute for Agricultural and Fisheries Research (ILVO), Technology and Food Unit, Brusselsesteenweg 370, 9090 Melle, Belgium
4Institute for Agricultural and Fisheries Research (ILVO), Plant Unit, Burgemeester Van Gansberghelaan 96/2, 9820 Merelbeke-Lemberge, Belgium

Tài liệu tham khảo

Callon, 2007, Stability of microbial communities in goat milk during a lactation year: molecular approaches, Syst. Appl. Microbiol., 30, 547, 10.1016/j.syapm.2007.05.004 Cempirkova, 2002, Psychrotrophic vs. total bacterial counts in bulk milk samples, Vet. Med. Czech., 47, 227, 10.17221/5829-VETMED Chen, 2003, Characteristics of proteinases and lipases produced by seven Bacillus spp. isolated from milk powder production lines, Int. Dairy J., 14, 495, 10.1016/j.idairyj.2003.10.006 Christiansson, 1998, Bacillus cereus spores in raw milk: factors affecting the contamination of milk during the grazing period, J. Dairy Sci., 82, 305, 10.3168/jds.S0022-0302(99)75237-9 Cosentino, 1997, Incidence and biochemical characteristics of Bacillus flora in Sardinian dairy products, Int. J. Food Microbiol., 38, 235, 10.1016/S0168-1605(97)00107-4 Crielly, 1994, Studies on the Bacillus flora of milk and milk products, J. Appl. Bacteriol., 77, 256, 10.1111/j.1365-2672.1994.tb03072.x Dawyndt, 2006, Mining fatty acid databases for detection of novel compounds in aerobic bacteria, J. Microbiol. Methods, 66, 410, 10.1016/j.mimet.2006.01.008 V. De Jonghe, A. Coorevits, J. Vandroemme, J. Heyrman, L. Herman, P. De Vos, M. Heyndrickx, Infraspecific genotypic diversity of Bacillus species from raw milk, Int. Dairy J. (2007), doi:10.1016/j.idairy.2007.11.2007. Drobniewski, 1993, Bacillus cereus and related species, Clin. Microbiol. Rev., 6, 324, 10.1128/CMR.6.4.324 Ellis, 2007, Dairy cow cleanliness and milk quality on organic and conventional farms in the UK, J. Dairy Res., 74, 302, 10.1017/S002202990700249X Eneroth, 1998, Critical contamination sites in the production line of pasteurised milk, with reference to the psychrotrophic spoilage flora, Int. Dairy J., 8, 829, 10.1016/S0958-6946(98)00123-X Goto, 2000, Application of the partial 16S rDNA sequence as an index for rapid identification of species in the genus Bacillus, J. Gen. Appl. Microbiol., 46, 1, 10.2323/jgam.46.1 Griffiths, 1990, Toxin production by psychrotrophic Bacillus spp. present in milk,, J. Food Prot., 53, 790, 10.4315/0362-028X-53.9.790 Hammer, 1924, A study of the yellow cocci which survive pasteurization, J. Dairy Sci., 11, 18, 10.3168/jds.S0022-0302(28)93609-7 Herman, 1997, Identification and detection of Bacillus sporothermodurans spores in 1, 10 and 100 milliliters of raw milk by PCR, Appl. Environ. Microbiol., 63, 3139, 10.1128/AEM.63.8.3139-3143.1997 Heyndrickx, 1996, Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy, J. Microbiol. Methods, 26, 617, 10.1016/0167-7012(96)00916-5 Heyrman, 2001, 16S rDNA sequence analysis of bacterial isolates from biodeteriorated mural paintings in the Servilia tomb (Necropolis of Carmona, Seville, Spain), Syst. Appl. Microbiol., 24, 417, 10.1078/0723-2020-00048 Janstova, 2004, Influence of Bacillus spp. enzymes on ultra high temperature-treated milk proteins, Acta Vet. BRNO, 73, 393, 10.2754/avb200473030393 Kaneda, 1977, Fatty acids of the genus Bacillus: an example of branched-chain preference, Bacteriol. Rev., 41, 391, 10.1128/MMBR.41.2.391-418.1977 Lukasova, 2001, Bacillus species in raw milk and in the farm environment, Milchwissenschaft, 56, 609 Matarante, 2004, Genotyping and toxigenic potential of Bacillus subtilis and Bacillus pumilus strains occurring in industrial and artisanal cured sausages, Appl. Environ. Microbiol., 70, 5168, 10.1128/AEM.70.9.5168-5176.2004 Mayr, 2006, Ornithinibacillus gen. nov., with the species Ornithinibacillus bavariensis sp. nov. and Ornithinibacillus californiensis sp. nov., Int. J. Syst. Evol. Microbiol., 56, 1383, 10.1099/ijs.0.64038-0 McGuiggan, 2002, Aerobic spore-forming bacteria in bulk raw milk: factors influencing the number of psychrotrophic, mesophilic and thermophilic Bacillus spores, Int. J. Dairy Technol., 55, 100, 10.1046/j.1471-0307.2002.00051.x McKillip, 2000, Prevalence and expression of enterotoxins in Bacillus cereus and other Bacillus spp., a literature review, Antonie van Leeuwenhoek, 77, 393, 10.1023/A:1002706906154 Meer, 1991, Psychrotrophic Bacillus spp. in fluid milk products: a review, J. Food Prot., 54, 969, 10.4315/0362-028X-54.12.969 Naser, 2005, Phylogeny and identification of enterococci using atpA gene sequence analysis, J. Clin. Microbiol., 43, 2224, 10.1128/JCM.43.5.2224-2230.2005 Pacova, 2003, Isolation of the psychrotolerant species Bacillus weihenstephanensis from raw cow's milk, Czech. J. Anim. Sci., 48, 93 Pettersson, 1996, Bacillus sporothermodurans, a new species producing highly heat resistant endospores, Int. J. Syst. Bacteriol., 46, 759, 10.1099/00207713-46-3-759 Philips, 1986, Factors contributing to the seasonal variation of Bacillus spp. in pasteurized dairy products, J. Appl. Bacteriol., 61, 275, 10.1111/j.1365-2672.1986.tb04288.x Rasko, 2005, Genomics of the Bacillus cereus group of organisms, FEMS Microbiol. Rev., 29, 303 Rilfors, 1978, Lipid and protein composition of membranes of Bacillus megaterium variants in the temperature range 5–70°C, J. Bacteriol., 135, 1043, 10.1128/JB.135.3.1043-1052.1978 Rowan, 1998, Diarrhoeal enterotoxin production by psychrotrophic Bacillus cereus present in reconstituted milk-based infant formulae (MIF), Lett. Appl. Microbiol., 26, 161, 10.1046/j.1472-765X.1998.00301.x Scheldeman, 2002, Polymerase chain reaction identification of Bacillus sporothermodurans from dairy sources, J. Appl. Microbiol., 92, 983, 10.1046/j.1365-2672.2002.01611.x Scheldeman, 2004, Paenibacillus lactis sp. nov., isolated from raw and heat-treated milk, Int. J. Syst. Evol. Microbiol., 54, 885, 10.1099/ijs.0.02822-0 Scheldeman, 2005, Incidence and diversity of potentially highly heat resistant spores isolated at dairy farms, Appl. Environ. Microbiol., 71, 1480, 10.1128/AEM.71.3.1480-1494.2005 Slaghuis, 1997, Effect of pasturing on the incidence of Bacillus cereus spores in raw milk, Int. Dairy J., 7, 201, 10.1016/S0958-6946(97)00012-5 Stead, 1991, Evaluation of a commercial microbial identification system based on fatty acid profiles for rapid, accurate identification of plant pathogenic bacteria, J. Appl. Bacteriol., 72, 315, 10.1111/j.1365-2672.1992.tb01841.x Stenfors Arnesen, 2007, 2007. Food poisoning potential of Bacillus cereus strains from Norwegian dairies, Int. J. Food Microbiol., 116, 292, 10.1016/j.ijfoodmicro.2006.12.021 Sutherland, 1994, Seasonal occurrence of psychrotrophic Bacillus species in raw milk, and studies on the interactions with mesophilic Bacillus sp., Int. J. Food Microbiol., 21, 279, 10.1016/0168-1605(94)90058-2 Tatzel, 1994, Identification of Bacillus strains isolated from milk and cream with classical and nucleic acid hybridization methods, J. Dairy Res., 61, 529, 10.1017/S0022029900028454 te Giffel, 1995, Occurrence and characterization of (psychrotrophic) Bacillus cereus on farms in the Netherlands, Neth. Milk Dairy J., 49, 125 te Giffel, 2002, Bacterial spores in silage and raw milk, Antonie van Leeuwenhoek, 81, 625, 10.1023/A:1020578110353 Ternström, 1993, Classification of the spoilage flora of raw and pasteurized bovine milk, with special reference to Pseudomonas and Bacillus, J. Appl. Microbiol., 19, 528 Vaerewijck, 2001, Occurrence of Bacillus sporothermodurans and other aerobic spore-forming species in feed concentrate for dairy cattle, J. Appl. Microbiol., 91, 1074, 10.1046/j.1365-2672.2001.01477.x Vancanneyt, 1996, Fatty acid content in whole-cell hydrolysates and phospholipid fractions of pseudomonads: a taxonomic evaluation, Syst. Appl. Microbiol., 19, 528, 10.1016/S0723-2020(96)80025-7 Van Coillie, 2007, Identification of lactobacilli isolated from the cloaca and vagina of laying hens and characterization for potential use as probiotics to control Salmonella Enteritidis, J. Appl. Microbiol., 102, 1095 Van Netten, 1990, Psychrotrophic strains of Bacillus cereus producing enterotoxin, J. Appl. Bacteriol., 69, 73, 10.1111/j.1365-2672.1990.tb02913.x Versalovic, 1994, Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction, Meth. Cell. Mol. Biol., 5, 25 Vissers, 2007, Minimizing the level of Bacillus spores in farm tank milk, J. Dairy Sci., 90, 3286, 10.3168/jds.2006-873 Waes, 1976, Aerobic mesophilic spores in raw milk, Milchwissenschaft, 31, 521 Wang, 2007, Comparison of gyrB sequences, 16S rRNA gene sequences and DNA–DNA hybridization in the Bacillus subtilis group, Int. J. Syst. Evol. Microbiol., 57, 1846, 10.1099/ijs.0.64685-0 Ward, 2002, Observational study of temperature, moisture, pH and bacteria in straw bedding, and faecal consistency, cleanliness, and mastitis in cows in four dairy herds, Vet. Rec., 151, 199, 10.1136/vr.151.7.199 Warth, 1978, Relationship between the heat resistance of spores and the optimum and maximum growth temperatures of Bacillus species, J. Bacteriol., 134, 699, 10.1128/JB.134.3.699-705.1978 Westhoff, 1981, Characterization of Bacillus species isolated from spoiled ultrahigh temperature processed milk, J. Dairy Sci., 64, 572, 10.3168/jds.S0022-0302(81)82614-8