Clustering gene expression data using a novel model of self-organizing map
Tóm tắt
Từ khóa
Tài liệu tham khảo
Spellman P T, Sherlock G, Zhang M Q, Iyer V R, Anders K, Eisen M B, Brown P Q, Boststein D, Futcher B. Comprehensive identification of cell cycle-regulated genes of the yeast saccharomyces cerevisiae by microarray hybridization mol[J]. Molecular Biology of the Cell, 1998, 9(12): 3273–3297.
Wen Xi-ling, Fuhrman S, Michaels G S, Carr D B, Smith S, Barker J L, Somogyi R. Large-scale temporal gene expression mapping of central nervous system development[J]. Proceedings of the National Academy of Sciences of the United States of America, 1998, 95(1): 334–339.
Eisen M B, Spellman P T, Brown P O, Botstein D. Cluster analysis and display of genome-wide expression patterns[J]. Proceedings of the National Academy of Sciences of the United States of America, 1998, 95(25): 14863–14868.
Tamayo P, Slonim D, Mesirov J, Zhu Qing, Kitareewan E, Dmitrovsky E, Lander E, Golub T. Interpreting patterns of gene expression with self-organizing maps, method and application to hematopoietic differentiation[J]. Proceedings of the National Academy of Sciences of the United States of America, 1999, 96(6): 2907–2912.
Tavazoie S, Hughes J D, Campbell M J, Cho R J, Church G M. Systematics determination of genetic network architecture[J]. Nature Genetics, 1999, 22(3): 281–285.
Jiang Da-xin, Tang Chun, Zhang Ai-dong. Cluster analysis for gene expression data: a survey[J]. IEEE Transactions on Knowledge and Data Engineering, 2004, 16(11): 1370–1386.
Yueng K Y, Haynor D R, Ruzzo W L. Validating clustering for gene expression data[J]. Bioinformatics, 2001, 17(4): 309–318.
Lange T, Roth V, Braun M L, Buhmann J M. Stability-based validation of clustering solutions[J]. Neural Computation, 2004, 16(6): 1299–1323.
Rauber A, Merkl D, Dittenbach M. The growing hierarchical self-organizing map: exploratory analysis of high-dimensional data[J]. IEEE Transactions on Neural Networks, 2002, 13(6): 1331–1441.
Fritzke B. Growing grid—a self-organizing network with constant neighborhood range and adaption strength[J]. Neural Processing Letters, 1995, 2(5): 1–5.
Castro R M, Coates M J, Nowak R D. Likelihood based hierarchical clustering[J]. IEEE Transactions on Signal Processing, 2004, 52(8): 2308–2321.