Clustered Memetic Algorithm With Local Heuristics for Ab Initio Protein Structure Prediction

10.1016/S0959-440X(00)00063-4

mann, 2009, Constraintbased local move definitions for lattice protein models including side chains, Proc Workshop Constraint Based Methods Bioinformatics, 51

10.1002/prot.22070

10.1007/3-540-32363-5_6

10.1007/3-540-32363-5_3

bazzoli, 2004, Applications of Evolutionary Computing, 3005, 1, 10.1007/978-3-540-24653-4_1

mann, 2009, Equivalence classes of optimal structures in HP protein models including side chains, Proc Workshop Constraint Based Methods Bioinformatics, 43

xia, 2000, Ab initio construction of protein tertiary structures using a hierarchical approach, J Molecular Biol, 300, 171, 10.1006/jmbi.2000.3835

10.1002/(SICI)1097-0134(1999)37:3+<194::AID-PROT24>3.0.CO;2-F

10.1021/ma00200a030

10.1063/1.1522710

cotta, 2003, Artificial Neural Nets Problem Solving Methods, 2687, 1044

10.1016/S0303-2647(98)00090-2

10.1109/TSMCB.2006.883271

10.1109/TSMCB.2006.883268

krasnogor, 2002, Multimeme algorithms for protein structure prediction, Proc Parallel Problem Solving From Nature (PPSN VII) LNCS 2439, 769

berg, 2002, Biochemistry

kennedy, 2005, Editorial: So much more to know, Science, 309, 78, 10.1126/science.309.5731.78b

hu, 2008, Flexible Protein Folding by Ant Colony Optimization (Studies in Computational Intelligence vol 151), 317

10.1007/978-3-540-30547-7_39

thalheim, 2008, Protein folding in the HP-model solved with a hybrid population based ACO algorithm, IAENG Int J Comput Sci, 35, 291

levinthal, 1968, Are there pathaways for protein folding?, J Chim Phys Phys Chim Biol, 65, 44, 10.1051/jcp/1968650044

10.1109/TEVC.2007.906095

10.1016/j.cor.2006.10.006

10.1016/j.sbi.2007.06.001

10.1109/CEC.2010.5586187

10.1016/j.sbi.2008.02.004

islam, 2009, Novel Memetic Algorithm for Protein Structure Prediction, 412

pelikan, 2000, Genetic Algorithms Clustering and the Breaking of Symmetry, 385

kim, 2001, An efficient genetic algorithm with less fitness evaluation by clustering, Proc CEC, 2, 887

10.1109/TSMCB.2005.860138

10.1162/evco.1997.5.1.81

b�ckenhauer, 2008, A Local Move Set for Protein Folding in Triangular Lattice Models, 5251, 369

lesh, 2003, A complete and effective move set for simplified protein folding, Proc 7th Annu Int Conf Research Comput Molecular Biol, 188, 10.1145/640075.640099

tamjidul, 2009, Genetic Algorithm in Ab Initio Protein Structure Prediction Using Low Resolution Model A Review (Studies in Computational Intelligence vol 224), 224, 317

10.1109/TEVC.2006.880328

10.1006/jmbi.1993.1258

10.1016/S0959-440X(02)00306-8

patton, 1995, A standard GA approach to native protein conformation prediction, Proc 6th Int Conf Genetic Algorithms, 574

10.1080/08927029708024151

krasnogor, 1999, Protein structure prediction with evolutionary algorithms, Proc Genet Eol Comput Conf, 1596

krasnogor, 1998, Genetic algorithms for the protein folding problem: A critical view, Proc Eng Intell Syst

hoque, 2006, A Hybrid Genetic Algorithm for 2-D FCC Hydrophobic-Hydrophilic Lattice Model to Predict Protein Folding, 4304, 867

hoque, 2007, Protein folding prediction in 3-D FCC HP lattice model using genetic algorithm, Proc IEEE CEC, 4138

10.1007/3-540-44886-1_30

shmygelska, 2005, An ant colony optimization algorithm for the 2-D and 3-D hydrophobic polar protein folding problem, BMC Bioinformatics, 6, 10.1186/1471-2105-6-30

10.1089/cmb.1996.3.53

10.1089/cmb.1998.5.27

10.1016/S0959-440X(99)80025-6

mauri, 1999, Approximation algorithms for protein folding prediction, Proc 10th Annu ACMSIAM Symp Discrete Algorithms, 945

cutello, 2004, An immune algorithm with hyper-macromutations for the Dill's 2-D hydrophobic-hydrophilic model, Proc IEEE CEC, 1074

10.1186/1471-2105-8-342

goldberg, 1999, Optimizing global-local search hybrids, Proc Genet Evol Comput Conf, 220

cutello, 2005, Immune Algorithms With Aging Operators for the String Folding Problem and the Protein Folding Problem, 80

holland, 1992, Adaptation in Natural and Artificial Systems, 10.7551/mitpress/1090.001.0001

dawkins, 1976, The Selfish Gene, 203

hoque, 2007, Generalized Schemata Theorem Incorporating Twin Removal for Protein Structure Prediction, 84

holland, 1975, Adaptation in Natural and Artificial Systems

hoque, 2006, Nonisomorphic coding in lattice model and its impact for protein folding prediction using genetic algorithm, Proc IEEE Symp Comput Intell Bioinformatics Comput Biol, 28

greenwood, 2003, On the Evolutionary Search for Solutions to the Protein Folding Problem, 115

moscato, 2004, Memetic Algorithm (New Optimization Techniques in Engineering), 54

10.1145/1621943.1621945