Các yếu tố phiên mã NAC CcNAC1 và CcNAC2 từ Citrullus colocynthis tham gia vào tín hiệu ánh sáng và auxin

Altamura MM, Archilletti T, Capone I, Costantino P (1991) Histological analysis of the expression of Agrobacterium rhizogenes rolB-GUS gene fusions in transgenic tobacco. New Phytol 118:69–78 Ang LH, Chattopadhyay S, Wei N, Oyama T, Okada K, Batschauer A, Deng XW (1998) Molecular interactions between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development. Mol Cell 1:213–222 Argüello-Astorga CR, Herrera-Estrella LR (1996) Ancestral multipartite units in light-responsive plant promoters have structural features correlating with specific phototransduction pathways. Plant Physiol 112:1151–1166 Bhatia S, Gangappa SN, Kuswaha R, Kundu S, Chattopadhyay S (2008) SHORT HYPOCOTYL IN WHITE LIGHT1 SHW1, a serine-arginine-aspartate-rich protein in Arabidopsis, acts as a negative regulator of photomorphogenic growth. Plant Physiol 147:169–178 Briggs WR, Huala E (1999) Blue-light photoreceptors in higher plants. Annu Rev Cell Dev Biol 15:33–62 Castelian M, Le Hir R, Bellini C (2012) The non-DNA-binding bHLH transcription factor PRE3/bHLH135/ATBS1/TMO7 is involved in the regulation of light signaling pathway in Arabidopsis. Physiol Plant 145:450–460 Chae K, Isaacs CG, Reeves PH, Maloney G, Muday GK, Nagpal P, Reed JW (2012) Arabidopsis SMALL AUXIN UP RNA63 promotes hypocotyl and stamen filament elongation. Plant J 71:684–697 Chan CS, Guo L, Shih MC (2001) Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana. Plant Mol Biol 46:131–141 Chatterjee M, Banerjee AK, Hannapel DJ (2007) A BELL1-Like gene of potato is light activated and wound inducible. Plant Physiol 145:1435–1443 Chattopadhyay S, Ang LH, Puente P, Deng XW, Wei N (1998) Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. Plant Cell 10:673–683 Chen M, Chory J, Fankhauser C (2004) Light signal transduction in higher plants. Annu Rev Genet 38:87–117 Cho JN, Ryu JY, Jeong YM, Park J, Song JJ, Amasino RM, Noh B, Noh YS (2012) Control of seed germination by light-induced histone arginine demethylation activity. Dev Cell 22:736–748 Clough SJ, Bent AF (1998) Floral dip, a simplified method from agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16:735–743 Cluis CP, Mouchel CF, Hardtke CS (2004) The Arabidopsis transcription factor HY5 integrates light and hormone signaling pathways. Plant J 38:332–347 Colón-Carmona A, Chen DL, Yeh K-C, Abel S (2000) Aux/IAA proteins are phosphorylated by phytochrome in vitro. Plant Physiol 124:1728–1738 Dehesh K, Bruce WB, Quail PH (1990) A trans-acting factor that binds to a GF-motif in the phytochrome gene promoter. Science 250:1397–1399 Donald RGK, Cashmore AR (1990) Mutation in either G box or I box sequences profoundly affects expression from the Arabidopsis thaliana rbcs-1 A promoter. EMBO J 9:17–26 Feldbrugge M, Sprenger M, Dinkelbach M, Yazaki K, Harter K, Weisshaar B (1994) Functional analysis of a light-responsive plant bZIP transcriptional regulator. Plant Cell 6:1607–1621 Folta FM, Koss LL, McMorrow R, Kim HH, Kenitz D, Wheeler R, Sager JC (2005) Design and fabrication of adjustable red-green-blue LED light arrays for plant research. BMC Plant Biol 5:17–28 Gangappa SN, Maurya JP, Yadav V, Chattopadhyay S (2013) The regulation of the Z- and G-box containing promoters by light signaling components, SPA1 and MYC2, in Arabidopsis. PLoS One 8:e62194 Genoud T, Buchala AJ, Chua NH, Métraux JP (2002) Phytochrome signaling modulates the SA-perceptive pathway in Arabidopsis. Plant J 31:87–95 He XJ, Mu RL, Cao WH, Zhang ZG, Zhang JS, Chen SY (2005) AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development. Plant J 44:903–916 Ibarra SE, Auge G, Sánchez RA, Botto JF (2013) Transcriptional programs related to phytochrome A function in Arabidopsis seed germination. Mol Plant 6:1261–1273 Inoue S, Kinoshita T, Takemiya A, Doi M, Shimazaki K (2008) Leaf positioning of Arabidopsis in responses to blue light. Mol Plant 1:15–26 Jefferson RA, Kavanagh TA, Bevan MW (1987) GUS fusion, β-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 6:3901–3907 Jia KP, Luo Q, He SB, Lue XD, Yang HQ (2013) Strigolactone-regulated hypocotyl elongation is dependent on cryptochrome and phytochrome signaling pathways in Arabidopsis. Mol Plant. doi:10.1093/mp/sst093 Kanyuka K, Praekelt U, Franklin KA, Billingham OE, Hooley R, Whitelam GC, Halliday KJ (2003) Mutations in the huge Arabidopsis gene BIG affect a range of hormone and light responses. Plant J 35:57–70 Kaplan-Levy RN, Brewer PB, Quon T, Smyth DR (2011) The trihelix family of transcription factors-light, stress and development. Trends Plant Sci 17:163–171 Kim BC, Soh MS, Hong SH, Furuya M, Nam HG (1998) Photomorphogenic development of the Arabidopsis shy2-1D mutation and its interaction with phytochromes in darkness. Plant J 15:61–68 Kimura M, Yamamoto YY, Seki M, Sakarai T, Sato M, Abe T, Yoshida S, Manabe K, Shinozaki K, Matsui M (2003) Identification of Arabidopsis genes regulated by high light-stress using cDNA microarray. Photochem Photobiol Sci 77:226–233 Koornneef M, Rolff E, Spruit CIP (1980) Genetic control of light-inhibited hypocotyl elongation in Arabidopsis thaliana. Z Pflanzenphysiol 100:147–160 Kraepiel Y, Miginiac E (1997) Photomorphogenesis and phytohormones. Plant Cell Environ 20:807–812 Kuhn RM, Caspar T, Dehesh K, Quail PH (1993) DNA binding factor GT-2 from Arabidopsis. Plant Mol Biol 23:337–348 Kurepin LV, Walton LJ, Reid DM, Chinnappa C (2010) Light regulation of endogenous salicylic acid levels in hypocotyls of Helianthus annuus seedlings. Botany 88:668–674 Lau OS, Deng XW (2010) Plant hormone signaling lightens up, integrators of light and hormone. Curr Opin Plant Biol 13:571–577 Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouzé P, Rombauts S (2002) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res 1:325–327 Lin R, Wang H (2005) Two homologous ATP-Binging cassette transporter protein, AtMDR1 and AtPGP1, regulate Arabidopsis photomorphogenesis and root development by mediating polar auxin transport. Plant Physiol 138:949–964 Lin JF, Wu SH (2004) Molecular events in senescing Arabidopsis leaves. Plant J 39:612–628 Liu X, Cohen JD, Gardner G (2011) Low-fluence red light increases the transport and biosynthesis of auxin. Plant Physiol 157:891–904 Millenaar FF, van Zanten M, Cox MCH, Pierik R, Voesenek LACJ, Peeters AJM (2009) Differential petiole growth in Arabidopsis thaliana, photocontrol and hormonal regulation. New Phytol 184:141–152 Monte E, Al-Sady B, Leivar P, Quail PH (2007) Out of the dark, how the PIFs are unmasking a dual temporal mechanism of phytochrome signaling. J Exp Bot 58:3125–3133 Morishita T, Kojima Y, Maruta T, Nishizawa-Yokoi A, Yabuta Y, Shigeoka S (2009) Arabidopsis NAC transcription factor, ANAC078, regulates flavonoid biosynthesis under high light. Plant Cell Physiol 50:2210–2222 Nagpal P, Walker LM, Yong JC, Sonawala A, Timpte C, Estelle M, Reed JW (2000) AXR2 encodes a member of the Aux/IAA protein family. Plant Physiol 123:563–573 Nalbandi K, Kohnehrouz BB, Saeed KA, Gholizadeh A (2012) Isolating barley Hordeum vulgare L. B1 hordein gene promoter and using sequencing analysis for the identification of conserved regulatory elements by bioinformatics tools. Afr J Biotechnol 11:7378–7387 Nusinow DA, Helfer A, Hamilton EE, King JJ, Imaizumi T, Schultz TF, Farré EM, Kay SA (2011) The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth. Nature 475:398–402 Olsen AN, Ernst HA, Leggio LL, Skriver K (2005) NAC transcription factors, structurally distinct, functionally diverse. Trends Plant Sci 10:79–87 Oyama T, Shimura Y, Okada K (1997) The Arabidopsis HY5 gene encodes a b ZIP protein that regulates stimulus-induced development of root and hypocotyl. Genes Dev 11:2983–2995 Park SC, Kwon HB, Shih MC (1996) Cis-acting elements essential for light regulation of the nuclear gene encoding the A subunit of chloroplast glyceraldehyde 3-phosphate dehydrogenase in Arabidopsis thaliana. Plant Physiol 112:1563–1571 Park J, Kim YS, Kim SG, Jung JH, Woo JC, Park CM (2011) Integration of auxin and salt signals by the NAC transcription factor NTM2 during seed germination in Arabidopsis. Plant Physiol 156:537–549 Parks BM (2003) The red side of photomorphogenesis. Plant Physiol 33:1437–1444 Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT–PCR. NAR 29:e45 Poppenberger B, Fujioka S, Soeno K, Soeno K, George GL, Vaistij FE, Hiranuma S, Seto H, Takatsuto S, Adam G, Yoshida S, Bowles D (2005) The UGT73C5 of Arabidopsis thaliana glucosylates brassinosteroids. PNAS 102:15253–15258 Rajendra V, Prasad B, Kumar SV, Nandi A, Chattopadhyay S (2012) Functional interconnections of HY1 with MYC2 and HY5 in Arabidopsis seedling development. BMC Plant Biol 12:37–50 Rizzini L, Favory J-J, Cloix C, Faggionato D, O’Hara A, Kaiserli E, Baumeister R, Schäfer E, Nagy F, Jenkins GI, Ulm R (2011) Perception of UV-B by the Arabidopsis UVR8 Protein. Science 332:103–106 Romano CP, Robson PR, Smith H, Estelle M, Klee H (1995) Transgene-mediated auxin overproduction in Arabidopsis: hypocotyl elongation phenotype and interactions with the hy6-1 hypocotyl elongation and axr1 auxin-resistant mutants. Plant Mol Biol 27:1071–1083 Safrany J, Haasz V, Mate Z, Ciolfi A, Feher B, Oravecz A, Stec A, Dallmann G, Morelli G, Ulm R, Nagy F (2008) Identification of a novel cis-regulatory element for UV-B-induced transcription in Arabidopsis. Plant J 54:402–414 Saito K, Watahiki MK, Yamamoto KT (2007) Differential expression of the auxin primary response gene MASSUGU2/IAA19 during tropic responses of Arabidopsis hypocotyls. Physiol Plant 130:148–156 Shikata H, Shibata M, Ushijima T, Nakashima M, Kong SG, Matsuoka K, Lin C, Matsushita T (2012) The RS domain of Arabidopsis splicing factor RRC1 is required for phytochrome B signal transduction. Plant J 70:727–738 Smirnova OG, Stepanenko IL, Shumny VK (2012) Mechanism of action and activity regulation of COP1, a constitutive repressor of photomorphogenesis. Russ J Plant Physl 59:155–166 Song YH, Yoo CM, Hong AP, Kim SH, Jeong HJ, Shin SY, Kim HJ, Yun DJ, Lim CO, Bahk JD, Lee SY, Nagao RT, Key JL, Hong JC (2008) DNA-binding study identifies C-box and hybrid C/G-box or C/A-box motifs as high-affinity binding sites for STF1 and LONG HYPOCOTYL5 proteins. Plant Physiol 146:1862–1877 Sorce C, Picciarelli P, Calistri G, Lercari B, Ceccarelli N (2008) The involvement of indole-3-acetic acid in the control of stem elongation in dark- and light-grown pea Pisum sativum. seedlings. J Plant Physiol 165:482–489 Soy J, Leivar P, González-Schain N, Sentandreu M, Prat S, Quail PH, Monte E (2012) Phytochrome-imposed oscillations in PIF3 protein abundance regulate hypocotyl growth under diurnal light/dark conditions in Arabidopsis. Plant J 71:390–401 Sun J, Qi L, Li Y, Zhai Q, Li C (2013) PIF4 and PIF5 transcription factors link blue light and auxin to regulate the phototropic response in Arabidopsis. Plant Cell. doi:10.1105/tpc.113.112417 Terzaghi WB, Cashmore AR (1995) Light-regulated transcription. Annu Rev Plant Physiol Plant Mol Biol 46:445–474 Thanh T, Chi VTQ, Omar H, Abdullah MP, Napis S (2012) Sequence analysis and potentials of the native Rbcs promoter in the development of an alternative eukaryotic expression system using green microalga Ankistrodesmus convolutus. Int J Mol Sci 13:2676–2691 Tian Q, Reed J (2001) Molecular links between light and auxin signalling pathways. Plant Growth Regul 20:274–280 Ulm R, Baumann A, Oravecz A, Máté Z, Adám E, Oakeley EJ, Schäfer E, Nagy F (2004) Genome-wide analysis of gene expression reveals function of the bZIP transcription factor HY5 in the UV-B response of Arabidopsis. PNAS 101:1397–1402 Valdés AE, Rizzardi K, Johannnesson H, Para A, Sundås-larsson A, Landberg K (2012) Arabidopsis thaliana TERMINAL FLOWER2 is involved in light-controlled signaling during seedling photomorphogenesis. Plant, Cell Environ 5:1013–1025 Vanderbussche F, Pierik R, Millenaar FF, Voesenek LA, Van Der Straeten D (2005) Reaching out of the shade. Curr Opin Plant Boil 8:462–468 Viret JF, Mabrouk Y, Bogorad L (1994) Transcriptional photoregulation of celltype preferred expression of maize rbcSm3, 3′ and 5′ sequences are involved. PNAS 91:8577–8581 Wang Z, Dane F (2013) NAC (NAM/ATAF/CUC) transcription factors in different stresses and their signaling pathway. Acta Physiol Plant 35:1397–1408 Wang R, Hong G, Han B (2004) Transcript abundance of rml1, encoding a putative GT1-like factor in rice, is up-regulated by Magnaporthe grisea and down-regulated by light. Gene 324:105–115 Wang L, Li L, Xu L, Zhou J, Zhuang H, Gong X, Wang M, Samuel SMS, Zhuge Q (2013) Isolation and functional analysis of the poplar RbcS gene promoter. Plant Mol Biol Rep 13:120–127 Wang Z, Rashotte A, Moss AG, Dane F (2014) Two NAC transcription factors from Citrullus colocynthis, CcNAC1, CcNAC2 implicated in multiple stress response. Acta Physiol Plant 36:621–634 Wu G, Cameron JN, Ljung K, Spalding EP (2010) A role for ABCB19-mediated polar auxin transport in seedling photomorphogenesis mediated by cryptochrome1 and phytochrome B. Plant J 62:179–191 Xie Q, Frugis G, Colgan D, Chun NH (2000) Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. Genes Dev 14:3024–3036 Yamada T, Tanaka Y, Sriprasertsak P, Kato H, Hashimoto T, Shimizu H, Shiraushi T (1992) Phenylalanine ammonia-lyase genes from Pisum sativum, structure, organ specific expression and regulation by funga1 elicitor and suppressor. Plant Cell Physiol 33:715–725 Zhang H, He H, Wang X, Wang X, Yang X, Li L, Deng XW (2011) Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post-transcriptional regulation. Plant J 65:346–358 Zhou DX (1999) Regulatory mechanism of plant gene transcription by GT-elements and GT-factors. Trends Plant Sci 4:201–214