Circular RNAs in Brain and Other Tissues: A Functional Enigma
Tài liệu tham khảo
Sanger, 1976, Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures, Proc. Natl. Acad. Sci. U.S.A., 73, 3852, 10.1073/pnas.73.11.3852
Kos, 1986, The Hepatitis Delta (Delta) virus possesses a circular RNA, Nature, 323, 558, 10.1038/323558a0
Grabowski, 1981, The intervening sequence of the ribosomal-RNA precursor Is converted to a circular RNA in isolated-nuclei of tetrahymena, Cell, 23, 467, 10.1016/0092-8674(81)90142-2
Zaug, 1983, Autocatalytic cyclization of an excised intervening sequence RNA is a cleavage-ligation reaction, Nature, 301, 578, 10.1038/301578a0
Kruger, 1982, Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena, Cell, 31, 147, 10.1016/0092-8674(82)90414-7
Lasda, 2014, Circular RNAs: diversity of form and function, RNA, 20, 1829, 10.1261/rna.047126.114
Nigro, 1991, Scrambled exons, Cell, 64, 607, 10.1016/0092-8674(91)90244-S
Cocquerelle, 1992, Splicing with inverted order of exons occurs proximal to large introns, EMBO J., 11, 1095, 10.1002/j.1460-2075.1992.tb05148.x
Capel, 1993, Circular transcripts of the testis-determining gene Sry in adult-mouse testis, Cell, 73, 1019, 10.1016/0092-8674(93)90279-Y
Kopczynski, 1992, Introns excised from the delta-primary transcript are localized near sites of delta-transcription, J. Cell Biol., 119, 503, 10.1083/jcb.119.3.503
Qian, 1992, A spliced intron accumulates as a lariat in the nucleus of T-cells, Nuc. Acids Res., 20, 5345, 10.1093/nar/20.20.5345
Zhang, 2013, Circular intronic long noncoding RNAs, Mol. Cell, 51, 792, 10.1016/j.molcel.2013.08.017
Li, 2015, Exon-intron circular RNAs regulate transcription in the nucleus, Nat. Struct. Mol. Biol., 22, 256, 10.1038/nsmb.2959
Salzman, 2012, Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types, PLoS ONE, 7, e30733, 10.1371/journal.pone.0030733
Memczak, 2013, Circular RNAs are a large class of animal RNAs with regulatory potency, Nature, 495, 333, 10.1038/nature11928
Jeck, 2013, Circular RNAs are abundant, conserved, and associated with ALU repeats, RNA, 19, 141, 10.1261/rna.035667.112
Salzman, 2013, Cell-type specific features of circular RNA expression, PLoS Genet., 9, e1003777, 10.1371/journal.pgen.1003777
Hentze, 2013, Circular RNAs: splicing's enigma variations, EMBO J., 32, 923, 10.1038/emboj.2013.53
Capel, 1993, Circular transcripts of the testis-determining gene Sry in adult mouse testis, Cell, 73, 1019, 10.1016/0092-8674(93)90279-Y
Cocquerelle, 1993, Missplicing yields circular RNA molecules, FASEB J., 7, 155, 10.1096/fasebj.7.1.7678559
Pasman, 1996, Exon circularization in mammalian nuclear extracts, RNA, 2, 603
Veno, 2015, Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development, Genome Biol., 16, 245, 10.1186/s13059-015-0801-3
Guo, 2014, Expanded identification and characterization of mammalian circular RNAs, Genome Biol., 15, 409, 10.1186/s13059-014-0409-z
Ashwal-Fluss, 2014, circRNA biogenesis competes with Pre-mRNA splicing, Mol. Cell, 56, 55, 10.1016/j.molcel.2014.08.019
Westholm, 2014, Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation, Cell Rep., 9, 1966, 10.1016/j.celrep.2014.10.062
Rybak-Wolf, 2015, Circular RNAs in the mammalian brain are highly abundant, conserved, and dynamically expressed, Mol. Cell, 58, 870, 10.1016/j.molcel.2015.03.027
You, 2015, Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity, Nat. Neurosci., 18, 603, 10.1038/nn.3975
Hansen, 2013, Natural RNA circles function as efficient microRNA sponges, Nature, 495, 384, 10.1038/nature11993
Wang, 2009, RNA-Seq: a revolutionary tool for transcriptomics, Nat. Rev. Genet., 10, 57, 10.1038/nrg2484
Liang, 2014, Short intronic repeat sequences facilitate circular RNA production, Genes Dev., 28, 2233, 10.1101/gad.251926.114
Zhang, 2014, Complementary sequence-mediated exon circularization, Cell, 159, 134, 10.1016/j.cell.2014.09.001
Szabo, 2015, Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development, Genome Biol., 16, 126, 10.1186/s13059-015-0690-5
Jeck, 2014, Detecting and characterizing circular RNAs, Nat. Biotechnol., 32, 453, 10.1038/nbt.2890
Gao, 2015, CIRI: an efficient and unbiased algorithm for de novo circular RNA identification, Genome Biol., 16, 4, 10.1186/s13059-014-0571-3
Hansen, 2016, Comparison of circular RNA prediction tools, Nuc. Acids Res., 44, e58, 10.1093/nar/gkv1458
Suzuki, 2006, Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing, Nuc. Acids Res., 34, e63, 10.1093/nar/gkl151
Starke, 2015, Exon circularization requires canonical splice signals, Cell Rep., 10, 103, 10.1016/j.celrep.2014.12.002
Zhang, 2016, The biogenesis of nascent circular RNAs, Cell Rep., 15, 611, 10.1016/j.celrep.2016.03.058
Ivanov, 2015, Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals, Cell Rep., 10, 170, 10.1016/j.celrep.2014.12.019
Conn, 2015, The RNA binding protein quaking regulates formation of circRNAs, Cell, 160, 1125, 10.1016/j.cell.2015.02.014
Wahlstedt, 2009, Large-scale mRNA sequencing determines global regulation of RNA editing during brain development, Genome Res., 19, 978, 10.1101/gr.089409.108
Zheng, 2016, Circular RNA profiling reveals an abundant circHIPK3 that regulates cell growth by sponging multiple miRNAs, Nat. Commun., 7, 11215, 10.1038/ncomms11215
Du, 2016, Foxo3 circular RNA retards cell cycle progression via forming ternary complexes with p21 and CDK2, Nuc. Acids Res., 44, 2846, 10.1093/nar/gkw027
Wang, 2015, Efficient backsplicing produces translatable circular mRNAs, RNA, 21, 172, 10.1261/rna.048272.114
Chen, 1995, Initiation of protein synthesis by the eukaryotic translational apparatus on circular RNAs, Science, 268, 415, 10.1126/science.7536344
Dong, 2016, CircRNA-derived pseudogenes, Cell Res., 26, 747, 10.1038/cr.2016.42