Circadian autophagy rhythm: a link between clock and metabolism?
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Asher, 2011, Crosstalk between components of circadian and metabolic cycles in mammals, Cell Metab., 13, 125, 10.1016/j.cmet.2011.01.006
Green, 2008, The meter of metabolism, Cell, 134, 728, 10.1016/j.cell.2008.08.022
Rutter, 2002, Metabolism and the control of circadian rhythms, Annu. Rev. Biochem., 71, 307, 10.1146/annurev.biochem.71.090501.142857
Lowrey, 2004, Mammalian circadian biology: elucidating genome-wide levels of temporal organization, Annu. Rev. Genomics Hum. Genet., 5, 407, 10.1146/annurev.genom.5.061903.175925
Baggs, 2010, Genomics and systems approaches in the mammalian circadian clock, Curr. Opin. Genet. Dev., 20, 581, 10.1016/j.gde.2010.08.009
Gachon, 2006, The circadian PAR-domain basic leucine zipper transcription factors DBP, TEF, and HLF modulate basal and inducible xenobiotic detoxification, Cell Metab., 4, 25, 10.1016/j.cmet.2006.04.015
Hems, 1975, Fatty acid synthesis in liver and adipose tissue of normal and genetically obese (ob/ob) mice during the 24-hour cycle, Biochem. J., 150, 167, 10.1042/bj1500167
Phillips, 1970, Circadian rhythm of mouse liver phosphoenolpyruvate carboxykinase, Am. J. Physiol., 218, 1440, 10.1152/ajplegacy.1970.218.5.1440
Edwards, 1972, In vivo demonstration of the circadian thythm of cholesterol biosynthesis in the liver and intestine of the rat, J. Lipid Res., 13, 396, 10.1016/S0022-2275(20)39403-7
Pan, 2010, Diurnal regulation of MTP and plasma triglyceride by CLOCK is mediated by SHP, Cell Metab., 12, 174, 10.1016/j.cmet.2010.05.014
Reppert, 2001, Molecular analysis of mammalian circadian rhythms, Annu. Rev. Physiol., 63, 647, 10.1146/annurev.physiol.63.1.647
McCarthy, 2007, Identification of the circadian transcriptome in adult mouse skeletal muscle, Physiol. Genomics, 31, 86, 10.1152/physiolgenomics.00066.2007
Panda, 2002, Coordinated transcription of key pathways in the mouse by the circadian clock, Cell, 109, 307, 10.1016/S0092-8674(02)00722-5
Storch, 2002, Extensive and divergent circadian gene expression in liver and heart, Nature, 417, 78, 10.1038/nature744
Ueda, 2002, A transcription factor response element for gene expression during circadian night, Nature, 418, 534, 10.1038/nature00906
Zvonic, 2006, Characterization of peripheral circadian clocks in adipose tissues, Diabetes, 55, 962, 10.2337/diabetes.55.04.06.db05-0873
Rey, 2011, Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver, PLoS Biol., 9, e1000595, 10.1371/journal.pbio.1000595
Feng, 2011, A circadian rhythm orchestrated by histone deacetylase 3 controls hepatic lipid metabolism, Science, 331, 1315, 10.1126/science.1198125
Cretenet, 2010, Circadian clock-coordinated 12 Hr period rhythmic activation of the IRE1alpha pathway controls lipid metabolism in mouse liver, Cell Metab., 11, 47, 10.1016/j.cmet.2009.11.002
Yang, 2006, Nuclear receptor expression links the circadian clock to metabolism, Cell, 126, 801, 10.1016/j.cell.2006.06.050
Schmutz, 2011, The mammalian clock component PERIOD2 coordinates circadian output by interaction with nuclear receptors, Genes Dev., 24, 345, 10.1101/gad.564110
Lamia, 2011, Cryptochromes mediate rhythmic repression of the glucocorticoid receptor, Nature, 480, 552, 10.1038/nature10700
Le Martelot, 2009, REV-ERBα participates in circadian SREBP signaling and bile acid homeostasis, PLoS Biol., 7, e1000181, 10.1371/journal.pbio.1000181
Rosenfeld, 2006, Sensors and signals: a coactivator/corepressor/epigenetic code for integrating signal-dependent programs of transcriptional response, Genes Dev., 20, 1405, 10.1101/gad.1424806
Spiegelman, 2004, Biological control through regulated transcriptional coactivators, Cell, 119, 157, 10.1016/j.cell.2004.09.037
Finck, 2006, PGC-1 coactivators: inducible regulators of energy metabolism in health and disease, J. Clin. Invest., 116, 615, 10.1172/JCI27794
Lin, 2005, Metabolic control through the PGC-1 family of transcription coactivators, Cell Metab., 1, 361, 10.1016/j.cmet.2005.05.004
Liu, 2007, Transcriptional coactivator PGC-1alpha integrates the mammalian clock and energy metabolism, Nature, 447, 477, 10.1038/nature05767
Li, 2011, Circadian metabolic regulation through crosstalk between casein kinase 1δ and transcriptional coactivator PGC-1α, Mol. Endocrinol., 25, 2084, 10.1210/me.2011-1227
Yin, 2005, The orphan nuclear receptor Rev-erbα recruits the N-CoR/histone deacetylase 3 corepressor to regulate the circadian Bmal1 gene, Mol. Endocrinol., 19, 1452, 10.1210/me.2005-0057
Duez, 2009, Rev-erb-α: an integrator of circadian rhythms and metabolism, J. Appl. Physiol., 107, 1972, 10.1152/japplphysiol.00570.2009
Asher, 2008, SIRT1 regulates circadian clock gene expression through PER2 deacetylation, Cell, 134, 317, 10.1016/j.cell.2008.06.050
Nakahata, 2008, The NAD+-dependent deacetylase SIRT1 modulates CLOCK-mediated chromatin remodeling and circadian control, Cell, 134, 329, 10.1016/j.cell.2008.07.002
Asher, 2010, Poly(ADP-ribose) polymerase 1 participates in the phase entrainment of circadian clocks to feeding, Cell, 142, 943, 10.1016/j.cell.2010.08.016
Bai, 2011, PARP-1 inhibition increases mitochondrial metabolism through SIRT1 activation, Cell Metab., 13, 461, 10.1016/j.cmet.2011.03.004
Um, 2007, Activation of 5′-AMP-activated kinase with diabetes drug metformin induces casein kinase Iepsilon (CKIepsilon)-dependent degradation of clock protein mPer2, J. Biol. Chem., 282, 20794, 10.1074/jbc.C700070200
Lamia, 2009, AMPK regulates the circadian clock by cryptochrome phosphorylation and degradation, Science, 326, 437, 10.1126/science.1172156
Copinschi, 2000, Pathophysiology of human circadian rhythms, Novartis Found. Symp., 227, 143, 10.1002/0470870796.ch9
Scheer, 2009, Adverse metabolic and cardiovascular consequences of circadian misalignment, Proc. Natl. Acad. Sci. U.S.A., 106, 4453, 10.1073/pnas.0808180106
Spiegel, 1999, Impact of sleep debt on metabolic and endocrine function, Lancet, 354, 1435, 10.1016/S0140-6736(99)01376-8
Antunes, 2010, Obesity and shift work: chronobiological aspects, Nutr. Res. Rev., 23, 155, 10.1017/S0954422410000016
Marcheva, 2010, Disruption of the clock components CLOCK and BMAL1 leads to hypoinsulinaemia and diabetes, Nature, 466, 627, 10.1038/nature09253
Turek, 2005, Obesity and metabolic syndrome in circadian Clock mutant mice, Science, 308, 1043, 10.1126/science.1108750
Lamia, 2008, Physiological significance of a peripheral tissue circadian clock, Proc. Natl. Acad. Sci. U.S.A., 105, 15172, 10.1073/pnas.0806717105
Fonken, 2010, Light at night increases body mass by shifting the time of food intake, Proc. Natl. Acad. Sci. U.S.A., 107, 18664, 10.1073/pnas.1008734107
Yang, 2010, Eaten alive: a history of macroautophagy, Nat. Cell Biol., 12, 814, 10.1038/ncb0910-814
He, 2009, Regulation mechanisms and signaling pathways of autophagy, Annu. Rev. Genet., 43, 67, 10.1146/annurev-genet-102808-114910
Kuma, 2004, The role of autophagy during the early neonatal starvation period, Nature, 432, 1032, 10.1038/nature03029
Mizushima, 2004, In vivo analysis of autophagy in response to nutrient starvation using transgenic mice expressing a fluorescent autophagosome marker, Mol. Biol. Cell, 15, 1101, 10.1091/mbc.E03-09-0704
Mizushima, 2011, Autophagy: renovation of cells and tissues, Cell, 147, 728, 10.1016/j.cell.2011.10.026
Ebato, 2008, Autophagy is important in islet homeostasis and compensatory increase of beta cell mass in response to high-fat diet, Cell Metab., 8, 325, 10.1016/j.cmet.2008.08.009
Jung, 2008, Loss of autophagy diminishes pancreatic beta cell mass and function with resultant hyperglycemia, Cell Metab., 8, 318, 10.1016/j.cmet.2008.08.013
Singh, 2009, Autophagy regulates lipid metabolism, Nature, 458, 1131, 10.1038/nature07976
Liang, 1999, Induction of autophagy and inhibition of tumorigenesis by beclin 1, Nature, 402, 672, 10.1038/45257
Grumati, 2010, Autophagy is defective in collagen VI muscular dystrophies, and its reactivation rescues myofiber degeneration, Nat. Med., 16, 1313, 10.1038/nm.2247
Komatsu, 2006, Loss of autophagy in the central nervous system causes neurodegeneration in mice, Nature, 441, 880, 10.1038/nature04723
Pfeifer, 1981, Autophagic vacuoles in heart muscle and liver. A comparative morphometric study including circadian variations in meal-fed rats, J. Mol. Cell. Cardiol., 13, 37, 10.1016/0022-2828(81)90227-3
Pfeifer, 1975, A morphometric study of cellular autophagy including diurnal variations in kidney tubules of normal rats, J. Cell Biol., 64, 608, 10.1083/jcb.64.3.608
Ma, 2011, Temporal orchestration of circadian autophagy rhythm by C/EBPbeta, EMBO J., 30, 4642, 10.1038/emboj.2011.322
Tu, 2005, Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes, Science, 310, 1152, 10.1126/science.1120499
Damiola, 2000, Restricted feeding uncouples circadian oscillators in peripheral tissues from the central pacemaker in the suprachiasmatic nucleus, Genes Dev., 14, 2950, 10.1101/gad.183500
Pfeifer, 1972, Inverted diurnal rhythm of cellular autophagy in liver cells of rats fed a single daily meal, Virchows Arch. B: Cell. Pathol., 10, 1
Tanaka, 1995, Targeted disruption of the NF-IL6 gene discloses its essential role in bacteria killing and tumor cytotoxicity by macrophages, Cell, 80, 353, 10.1016/0092-8674(95)90418-2
Croniger, 2001, Mice with a deletion in the gene for CCAAT/enhancer-binding protein beta have an attenuated response to cAMP and impaired carbohydrate metabolism, J. Biol. Chem., 276, 629, 10.1074/jbc.M007576200
Cao, 1991, Regulated expression of three C/EBP isoforms during adipose conversion of 3T3-L1 cells, Genes Dev., 5, 1538, 10.1101/gad.5.9.1538
Akira, 1990, A nuclear factor for IL-6 expression (NF-IL6) is a member of a C/EBP family, EMBO J., 9, 1897, 10.1002/j.1460-2075.1990.tb08316.x
Wang, 2000, Increased insulin receptor substrate-1 and enhanced skeletal muscle insulin sensitivity in mice lacking CCAAT/enhancer-binding protein beta, J. Biol. Chem., 275, 14173, 10.1074/jbc.M000764200
Mammucari, 2007, FoxO3 controls autophagy in skeletal muscle in vivo, Cell Metab., 6, 458, 10.1016/j.cmet.2007.11.001
Zhao, 2007, FoxO3 coordinately activates protein degradation by the autophagic/lysosomal and proteasomal pathways in atrophying muscle cells, Cell Metab., 6, 472, 10.1016/j.cmet.2007.11.004
Sengupta, 2009, FoxO transcription factors promote autophagy in cardiomyocytes, J. Biol. Chem., 284, 28319, 10.1074/jbc.M109.024406
Seo, 2011, Genome-wide localization of SREBP-2 in hepatic chromatin predicts a role in autophagy, Cell Metab., 13, 367, 10.1016/j.cmet.2011.03.005
Settembre, 2011, TFEB links autophagy to lysosomal biogenesis, Science, 332, 1429, 10.1126/science.1204592
Sardiello, 2009, A gene network regulating lysosomal biogenesis and function, Science, 325, 473, 10.1126/science.1174447
Ganley, 2009, ULK1.ATG13.FIP200 complex mediates mTOR signaling and is essential for autophagy, J. Biol. Chem., 284, 12297, 10.1074/jbc.M900573200
Jung, 2009, ULK–Atg13–FIP200 complexes mediate mTOR signaling to the autophagy machinery, Mol. Biol. Cell, 20, 1992, 10.1091/mbc.E08-12-1249
Hosokawa, 2009, Nutrient-dependent mTORC1 association with the ULK1–Atg13–FIP200 complex required for autophagy, Mol. Biol. Cell, 20, 1981, 10.1091/mbc.E08-12-1248
Shang, 2011, Nutrient starvation elicits an acute autophagic response mediated by Ulk1 dephosphorylation and its subsequent dissociation from AMPK, Proc. Natl. Acad. Sci. U.S.A., 108, 4788, 10.1073/pnas.1100844108
Kim, 2011, AMPK and mTOR regulate autophagy through direct phosphorylation of Ulk1, Nat. Cell Biol., 13, 132, 10.1038/ncb2152
Egan, 2011, Phosphorylation of ULK1 (hATG1) by AMP-activated protein kinase connects energy sensing to mitophagy, Science, 331, 456, 10.1126/science.1196371
Loboda, 2009, Diurnal variation of the human adipose transcriptome and the link to metabolic disease, BMC Med. Genomics, 2, 7, 10.1186/1755-8794-2-7
Minami, 2009, Measurement of internal body time by blood metabolomics, Proc. Natl. Acad. Sci. U.S.A., 106, 9890, 10.1073/pnas.0900617106
Ezaki, 2011, Liver autophagy contributes to the maintenance of blood glucose and amino acid levels, Autophagy, 7, 727, 10.4161/auto.7.7.15371
Reddy, 2006, Circadian orchestration of the hepatic proteome, Curr. Biol., 16, 1107, 10.1016/j.cub.2006.04.026
Youle, 2011, Mechanisms of mitophagy, Nat. Rev. Mol. Cell Biol., 12, 9, 10.1038/nrm3028
Uchiyama, 1990, Rhythms in morphology and function of hepatocytes, J. Gastroenterol. Hepatol., 5, 321, 10.1111/j.1440-1746.1990.tb01634.x
Takamura, 2011, Autophagy-deficient mice develop multiple liver tumors, Genes Dev., 25, 795, 10.1101/gad.2016211
Hidvegi, 2010, An autophagy-enhancing drug promotes degradation of mutant alpha1-antitrypsin Z and reduces hepatic fibrosis, Science, 329, 229, 10.1126/science.1190354
Liu, 2009, Hepatic autophagy is suppressed in the presence of insulin resistance and hyperinsulinemia: inhibition of FoxO1-dependent expression of key autophagy genes by insulin, J. Biol. Chem., 284, 31484, 10.1074/jbc.M109.033936
Yang, 2010, Defective hepatic autophagy in obesity promotes ER stress and causes insulin resistance, Cell Metab., 11, 467, 10.1016/j.cmet.2010.04.005
Ohsaki, 2006, Cytoplasmic lipid droplets are sites of convergence of proteasomal and autophagic degradation of apolipoprotein B, Mol. Biol. Cell, 17, 2674, 10.1091/mbc.E05-07-0659
Pan, 2007, Diurnal regulation of microsomal triglyceride transfer protein and plasma lipid levels, J. Biol. Chem., 282, 24707, 10.1074/jbc.M701305200
Zhang, 2009, Adipose-specific deletion of autophagy-related gene 7 (atg7) in mice reveals a role in adipogenesis, Proc. Natl. Acad. Sci. U.S.A., 106, 19860, 10.1073/pnas.0906048106
Singh, 2009, Autophagy regulates adipose mass and differentiation in mice, J. Clin. Invest., 119, 3329
Ukai, 2010, Systems biology of mammalian circadian clocks, Annu. Rev. Physiol., 72, 579, 10.1146/annurev-physiol-073109-130051
Dibner, 2010, The mammalian circadian timing system: organization and coordination of central and peripheral clocks, Annu. Rev. Physiol., 72, 517, 10.1146/annurev-physiol-021909-135821
Welsh, 2010, Suprachiasmatic nucleus: cell autonomy and network properties, Annu. Rev. Physiol., 72, 551, 10.1146/annurev-physiol-021909-135919
Yin, 2006, Nuclear receptor Rev-erbα is a critical lithium-sensitive component of the circadian clock, Science, 311, 1002, 10.1126/science.1121613
Mehra, 2009, Post-translational modifications in circadian rhythms, Trends Biochem. Sci., 34, 483, 10.1016/j.tibs.2009.06.006
Leproult, 2010, Role of sleep and sleep loss in hormonal release and metabolism, Endocr. Dev., 17, 11, 10.1159/000262524
Rudic, 2004, BMAL1 and CLOCK, two essential components of the circadian clock, are involved in glucose homeostasis, PLoS Biol., 2, e377, 10.1371/journal.pbio.0020377
Mizushima, 2011, The role of Atg proteins in autophagosome formation, Annu. Rev. Cell Dev. Biol., 27, 107, 10.1146/annurev-cellbio-092910-154005
Kroemer, 2010, Autophagy and the integrated stress response, Mol. Cell, 40, 280, 10.1016/j.molcel.2010.09.023
Mehrpour, 2010, Overview of macroautophagy regulation in mammalian cells, Cell Res., 20, 748, 10.1038/cr.2010.82
Hosokawa, 2009, Nutrient-dependent mTORC1 association with the ULK1-Atg13–FIP200 complex required for autophagy, Mol. Biol. Cell, 20, 1981, 10.1091/mbc.e08-12-1248