Chromosomal sex-determining regions in animals, plants and fungi

Ohno, 1967 Skaletsky, 2003, The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes, Nature, 423, 825, 10.1038/nature01722 Lahn, 1999, Four evolutionary strata on the human X chromosome, Science, 286, 964, 10.1126/science.286.5441.964 Ross, 2005, The DNA sequence of the human X chromosome, Nature, 434, 325, 10.1038/nature03440 Charlesworth, 1991, The evolution of sex chromosomes, Science, 251, 1030, 10.1126/science.1998119 Hillier, 2004, Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution, Nature, 432, 695, 10.1038/nature03154 Emerson, 2004, Extensive gene traffic on the mammalian X chromosome, Science, 303, 537, 10.1126/science.1090042 Khil, 2005, X for intersection: retrotransposition both on and off the X chromosome is more frequent, Trends Genet, 21, 3, 10.1016/j.tig.2004.11.005 Sandstedt, 2004, Evolutionary strata on the mouse X chromosome correspond to strata on the human X chromosome, Genome Res, 14, 267, 10.1101/gr.1796204 Nanda, 1999, 300 million years of conserved synteny between chicken Z and human chromosome 9, Nat Genet, 21, 258, 10.1038/6769 Fridolfsson, 1998, Evolution of the avian sex chromosomes from an ancestral pair of autosomes, Proc Natl Acad Sci USA, 95, 8147, 10.1073/pnas.95.14.8147 Rozen, 2003, Abundant gene conversion between arms of palindromes in human and ape Y chromosomes, Nature, 423, 873, 10.1038/nature01723 Backstrom, 2005, Gene conversion drives the evolution of HINTW, an ampliconic gene on the female-specific avian W chromosome, Mol Biol Evol, 22, 1992, 10.1093/molbev/msi198 Handley, 2004, Evolutionary strata on the chicken Z chromosome: implications for sex chromosome evolution, Genetics, 167, 367, 10.1534/genetics.167.1.367 Kumar, 1998, A molecular timescale for vertebrate evolution, Nature, 392, 917, 10.1038/31927 Woodburne, 2003, The evolution of tribospheny and the antiquity of mammalian clades, Mol Phylogenet Evol, 28, 360, 10.1016/S1055-7903(03)00113-1 Rens, 2004, Resolution and evolution of the duck-billed platypus karyotype with an X1Y1X2Y2X3Y3X4Y4X5Y5 male sex chromosome constitution, Proc Natl Acad Sci USA, 101, 16257, 10.1073/pnas.0405702101 Grutzner, 2004, In the platypus a meiotic chain of ten sex chromosomes shares genes with the bird Z and mammal X chromosomes, Nature, 432, 913, 10.1038/nature03021 Waters, 2005, Autosomal location of genes from the conserved mammalian X in the platypus (Ornithorhynchus anatinus): implications for mammalian sex chromosome evolution, Chromosome Res, 13, 401, 10.1007/s10577-005-0978-5 Nanda, 1988, Simple GATCA repeats characterize the X chromosomal heterochromatin of Microtus agrestis, European field vole (Rodentia, Cricetidae), Chromosoma, 96, 213, 10.1007/BF00302360 Marchal, 2004, X chromosome painting in Microtus: origin and evolution of the giant sex chromosomes, Chromosome Res, 12, 767, 10.1007/s10577-005-5077-0 Kondo, 2004, Evolutionary origin of the medaka Y chromosome, Curr Biol, 14, 1664, 10.1016/j.cub.2004.09.026 Nanda, 2002, A duplicated copy of DMRT1 in the sex-determining region of the Y chromosome of the medaka, Oryzias latipes, Proc Natl Acad Sci USA, 99, 11778, 10.1073/pnas.182314699 Matsuda, 2002, DMY is a Y-specific DM-domain gene required for male development in the medaka fish, Nature, 417, 559, 10.1038/nature751 Naruse, 2004, A medaka gene map: the trace of ancestral vertebrate proto-chromosomes revealed by comparative gene mapping, Genome Res, 14, 820, 10.1101/gr.2004004 Peichel, 2004, The master sex-determination locus in threespine sticklebacks is on a nascent Y chromosome, Curr Biol, 14, 1416, 10.1016/j.cub.2004.08.030 Filatov, 2005, Evolutionary genetics: stickleback's view of sex chromosome evolution, Heredity, 94, 275, 10.1038/sj.hdy.6800614 Adams, 2000, The genome sequence of Drosophila melanogaster, Science, 287, 2185, 10.1126/science.287.5461.2185 Richards, 2005, Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution, Genome Res, 15, 1, 10.1101/gr.3059305 Carvalho, 2005, Y chromosome of D. pseudoobscura is not homologous to the ancestral Drosophila, Science, 307, 108, 10.1126/science.1101675 Liu, 2004, A primitive Y chromosome in papaya marks incipient sex chromosome evolution, Nature, 427, 348, 10.1038/nature02228 Charlesworth, 2004, Plant evolution: modern sex chromosomes, Curr Biol, 14, R271, 10.1016/j.cub.2004.03.021 Nicolas, 2005, A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants, PLoS Biol, 3, e4, 10.1371/journal.pbio.0030004 Filatov, 2005, Evolutionary history of Silene latifolia sex chromosomes revealed by genetic mapping of four genes, Genetics, 170, 975, 10.1534/genetics.104.037069 Okada, 2001, The Y chromosome in the liverwort Marchantia polymorpha has accumulated unique repeat sequences harboring a male-specific gene, Proc Natl Acad Sci USA, 98, 9454, 10.1073/pnas.171304798 Hood, 2004, Shared forces of sex chromosome evolution in haploid-mating and diploid-mating organisms: Microbotryum violaceum and other model organisms, Genetics, 168, 141, 10.1534/genetics.104.029900 Fraser, 2004, Evolution of fungal sex chromosomes, Mol Microbiol, 51, 299, 10.1046/j.1365-2958.2003.03874.x Lengeler, 2002, Mating-type locus of Cryptococcus neoformans: a step in the evolution of sex chromosomes, Eukaryot Cell, 1, 704, 10.1128/EC.1.5.704-718.2002 Fraser, 2004, Convergent evolution of chromosomal sex-determining regions in the animal and fungal kingdoms, PLoS Biol, 2, e384, 10.1371/journal.pbio.0020384 Loftus, 2005, The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans, Science, 307, 1321, 10.1126/science.1103773 Iwase, 2003, The amelogenin loci span an ancient pseudoautosomal boundary in diverse mammalian species, Proc Natl Acad Sci USA, 100, 5258, 10.1073/pnas.0635848100 Lee, 1999, The mating-type and pathogenicity locus of the fungus Ustilago hordei spans a 500-kb region, Proc Natl Acad Sci USA, 96, 15026, 10.1073/pnas.96.26.15026 Bakkeren, 1994, Linkage of mating-type loci distinguishes bipolar from tetrapolar mating in basidiomycetous smut fungi, Proc Natl Acad Sci USA, 91, 7085, 10.1073/pnas.91.15.7085 Gallegos, 2000, Suppressed recombination and a pairing anomaly on the mating-type chromosome of Neurospora tetrasperma, Genetics, 154, 623, 10.1093/genetics/154.2.623 Jacobson, 2005, Blocked recombination along the mating-type chromosomes of Neurospora tetrasperma involves both structural heterozygosity and autosomal genes, Genetics, 10.1534/genetics.105.044040 Hood, 2002, Dimorphic mating-type chromosomes in the fungus Microbotryum violaceum, Genetics, 160, 457, 10.1093/genetics/160.2.457 Hood, 2005, Repetitive DNA in the automictic fungus Microbotryum violaceum, Genetica, 124, 1, 10.1007/s10709-004-6615-y