Chemical methods for glycoprotein discovery
Tài liệu tham khảo
Varki, 1993, Biological roles of oligosaccharides: all of the theories are correct, Glycobiology, 3, 97, 10.1093/glycob/3.2.97
Jung, 2001, Annotation of glycoproteins in the SWISS-PROT database, Proteomics, 1, 262, 10.1002/1615-9861(200102)1:2<262::AID-PROT262>3.0.CO;2-#
Apweiler, 1999, On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database, Biochim Biophys Acta, 1473, 4, 10.1016/S0304-4165(99)00165-8
Hirabayashi, 2002, Separation technologies for glycomics, J Chromatogr B, 771, 67, 10.1016/S1570-0232(02)00057-0
Prescher, 2006, Chemical technologies for probing glycans, Cell, 126, 851, 10.1016/j.cell.2006.08.017
Vosseller, 2006, O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry, Mol Cell Proteomics, 5, 923, 10.1074/mcp.T500040-MCP200
Sinz, 2006, Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein–protein interactions, Mass Spectrom Rev, 25, 663, 10.1002/mas.20082
Ramachandran, 2006, Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry, J Proteome Res, 5, 1493, 10.1021/pr050492k
Hirabayashi, 2001, Glycome project: concept, strategy and preliminary application to Caenorhabditis elegans, Proteomics, 1, 295, 10.1002/1615-9861(200102)1:2<295::AID-PROT295>3.0.CO;2-C
Wells, 2002, Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications, Mol Cell Proteomics, 1, 791, 10.1074/mcp.M200048-MCP200
Sparbier, 2005, Selective isolation of glycoproteins and glycopeptides for MALDI-TOF MS detection supported by magnetic particles, J Biomol Tech, 16, 407
Sparbier, 2006, Exploring the binding profiles of ConA, boronic acid and WGA by MALDI-TOF/TOF MS and magnetic particles, J Chromatogr B Analyt Technol Biomed Life Sci, 840, 29, 10.1016/j.jchromb.2006.06.028
Khidekel, 2004, Exploring the O-GlcNAc proteome: Direct identification of O-GlcNAc-modified proteins from the brain, Proc Natl Acad Sci USA, 101, 13132, 10.1073/pnas.0403471101
Prescher, 2005, Chemistry in living systems, Nat Chem Biol, 1, 13, 10.1038/nchembio0605-13
Prescher, 2004, Chemical remodelling of cell surfaces in living animals, Nature, 430, 873, 10.1038/nature02791
Mahal, 1997, Engineering chemical reactivity on cell surfaces through oligosaccharide biosynthesis, Science, 276, 1125, 10.1126/science.276.5315.1125
Saxon, 2000, Cell surface engineering by a modified Staudinger reaction, Science, 287, 2007, 10.1126/science.287.5460.2007
Vocadlo, 2003, A chemical approach for identifying O-GlcNAc-modified proteins in cells. Proc Natl Acad Sci USA, 100, 9116, 10.1073/pnas.1632821100
Hang, 2003, A metabolic labeling approach toward proteomic analysis of mucin-type O-linked glycosylation, Proc Natl Acad Sci USA, 100, 14846, 10.1073/pnas.2335201100
Sawa, 2006, Glycoproteomic probes for fluorescent imaging of fucosylated glycans in vivo, Proc Natl Acad Sci USA, 103, 12371, 10.1073/pnas.0605418103
Rabuka, 2006, A chemical reporter strategy to probe glycoprotein fucosylation, J Am Chem Soc, 128, 12078, 10.1021/ja064619y
Sampathkumar, 2006, Metabolic installation of thiols into sialic acid modulates adhesion and stem cell biology, Nat Chem Biol, 2, 149, 10.1038/nchembio770
Dube, 2006, Probing mucin-type O-linked glycosylation in living animals, Proc Natl Acad Sci USA, 103, 4819, 10.1073/pnas.0506855103
Speers, 2004, Profiling enzyme activities in vivo using click chemistry methods, Chem Biol, 11, 535, 10.1016/j.chembiol.2004.03.012
Agard, 2004, A strain-promoted [3+2] azide–alkyne cycloaddition for covalent modification of biomolecules in living systems, J Am Chem Soc, 126, 15046, 10.1021/ja044996f
Sprung, 2005, Tagging-via-substrate strategy for probing O-GlcNAc modified proteins, J Proteome Res, 4, 950, 10.1021/pr050033j
Nandi, 2006, Global identification of O-GlcNAc-modified proteins, Anal Biochem, 78, 452
Domon, 2006, Mass spectrometry and protein analysis, Science, 312, 212, 10.1126/science.1124619
Zhang, 2003, Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry, Nat Biotechnol, 21, 660, 10.1038/nbt827
Vosseller, 2005, Quantitative analysis of both protein expression and serine/threonine post-translational modifications through stable isotope labeling with dithiothreitol, Proteomics, 5, 388, 10.1002/pmic.200401066
Kaji, 2003, Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins, Nat Biotechnol, 21, 667, 10.1038/nbt829
Lewandrowski, 2006, Elucidation of N-glycosylation sites on human platelet proteins: a glycoproteomic approach, Mol Cell Proteomics, 5, 226, 10.1074/mcp.M500324-MCP200
Han, 2005, Homomultimeric complexes of CD22 in B cells revealed by protein-glycan cross-linking, Nat Chem Biol, 1, 93, 10.1038/nchembio713
Hennet, 2002, The galactosyltransferase family, Cell Mol Life Sci, 59, 1081, 10.1007/s00018-002-8489-4
Fritz, 2006, Dynamic association between the catalytic and lectin domains of human UDP-GalNAc:polypeptide α-N-acetylgalactosaminyltransferase-2, J Biol Chem, 281, 8613, 10.1074/jbc.M513590200
Shah, 1997, Engineering unnatural nucleotide specificity for Rous sarcoma virus tyrosine kinase to uniquely label its direct substrates, Proc Natl Acad Sci USA, 94, 3565, 10.1073/pnas.94.8.3565
Ulrich, 2003, Engineering a ‘methionine clamp’ into Src family kinases enhances specificity toward unnatural ATP analogues, Biochemistry, 42, 7915, 10.1021/bi030042a
Bishop, 2000, Unnatural ligands for engineered proteins: new tools for chemical genetics, Annu Rev Biophys Biomol Struct, 29, 577, 10.1146/annurev.biophys.29.1.577
Hang, 2001, Ketone isosteres of 2-N-acetamidosugars as substrates for metabolic cell surface engineering, J Am Chem Soc, 123, 1242, 10.1021/ja002962b
Luchansky, 2003, Constructing azide-labeled cell surfaces using polysaccharide biosynthetic pathways, Methods Enzymol, 362, 249, 10.1016/S0076-6879(03)01018-8
Luchansky, 2004, Azido sialic acids can modulate cell-surface interactions, Chem Bio Chem, 5, 1706, 10.1002/cbic.200400148
Laughlin, 2006, Metabolic labeling of glycans with azido sugars for visualization and glycoproteomics, Methods in Enzymology, 415, 230, 10.1016/S0076-6879(06)15015-6
Sun B, Ranish JA, Utleg AG, White JT, Yan X, Lin B, Hood L: Shotgun glycopeptide-capture approach coupled with mass spectrometry for comprehensive glycoproteomics. Mol Cell Proteomics (in press).