Characterizing binding sites of heat responsive microRNAs and their expression pattern in heat stressed PBMCs of native cattle, exotic cattle and riverine buffaloes

Springer Science and Business Media LLC - Tập 46 Số 6 - Trang 6513-6524 - 2019
Pallavi Sharma1, Ankita Sharma2, Monika Sodhi2, Preeti Verma2, Parvesh Kumari2, Shelesh Kumar Swami2, Amandeep Jast2, Umesh K. Shandilya2, Manishi Mukesh3
1ICAR- National Dairy Research Institute, Karnal, Haryana, India
2ICAR- National Bureau of Animal Genetic Resources, Karnal, Haryana, India
3ICAR-National Bureau of Animal Genetic Resources, Karnal, India

Tóm tắt

Từ khóa


Tài liệu tham khảo

Chase LE (2006) Climate change impact on Dairy Cattle, climate change and Agriculture promoting practical and profitable responses, department of animal science. http://climateandfarming.org/pdfs/FactSheets/III.3Cattle.pdf . Accessed 14 Dec 2018

Hansen PJ (2004) Physiological and cellular adaptations of zebu cattle to thermal stress. Anim Reprod Sci 82:349–360

Kadzere CT, Murphy MR, Silanikow N, Maltz E (2002) Heat stress in lactating dairy cows: a review. Livest Prod Sci 77(1):59–91

Little S, Campbell J (2008) Cool cows- Dealing with heat stress in Australian herds. Australian Dairy

Gaughan JB, Mader TL, Holt SM, Josey MJ, Rowan KJ (1999) Heat tolerance of Boran and Tuli crossbred steers. J Anim Sci 77(9):2398–2405

Dikmen S, Alava E, Pontes E, Fear JM, Dikmen BY, Olson TA, Hansen PJ (2008) Differences in thermoregulatory ability between slick-haired and wild-type lactating Holstein cows in response to acute heat stress. J Dairy Sci 9:3395–3402

Liu Y, Li D, Li H, Zhou X, Wang G (2011) A novel SNP of the ATP1A1 gene is associated with heat tolerance traits in dairy cows. Mol Biol Rep 38(1):83–88

Wang Z, Wang G, Huang J, Li Q, Wang C, Zhong J (2011) Novel SNPs in the ATP1B2 gene and their associations with milk yield, milk composition and heat-resistance traits in Chinese Holstein cows. Mol Biol Rep 38(3):1749–1755

Multhoff G (2007) Heat shock protein 70 (Hsp70): membrane location, export and immunological relevance. Methods 43(3):229–237

Lindquist S, Craig D (1988) The heat shock proteins. Annu Rev Genet 22:631–677

Neuer A, Spandorfer SD, Giraldo P, Dieterle S, Rosenwaks Z, Witkin SS (2000) The role of heat shock proteins in reproduction. Eur Soc Hum Reprod Embryol 6(2):149–159

Kerekoppa RP, Rao A, Basavaraju M, Geetha GR, Krishnamurthy L, Rao TV, Das N, Mukund K (2015) Molecular characterization of the HSPA1A gene by single-strand conformation polymorphism and sequence analysis in Holstein-Friesian crossbred and Deoni cattle raised in India. Turk J Vet Anim Sci 39(2):28–133

Basirico I, Morera P, Primi V, Lacetera N, Nardone A, Bernabucci U (2011) Cellular thermotolerance is assoaciated with HSP 70.1 genetic polymorphism in Holestein lactating cows. Cell Stress Chaperone 11:441–448

Han JB, Li QL, Wang CF, Wang HM, Li JB, Zhong JF, Pan QJ (2009) A new SNP in coding region of HSP70 gene and the association of polymorphism with heat stress traits in Chinese Holstein cattle. J Agric Sci Technol 11(3):56–63

Adamowicz T, Pers E, Lechniak D (2005) A new SNP in the 3′ -UTR of the HSP 70-1 gene in Bos taurus and Bos indicus. Biochem Genet 43:623–627

Li QL, Ju ZH, Huang JM, Li JB, Li RL, Hou MH, Wang CF, Zhong JF (2010) Two novel SNPs in HSF1 gene are associated with thermal tolerance traits in Chinese Holstein cattle. DNA Cell Biol 30(4):247–254

Cheng WJ, Li QL, Wang CF, Wang HM, Li JB, Sun YM, Zhong JF (2009) Genetic polymorphism of HSP70-1 gene and its correlation with resistance to mastitis in Chinese Holstein. Yi chuan = Hereditas 31:169–174

Schwerin M, Maak S, Kalbe C, Fuerbass R (2001) Functional promoter variants of highly conserved inducible hsp70 genes significantly affect stress response. Biochim Biophys Acta 1522:108–111

Schwerin M, Maak S, Hagendorf A, Lengerken G, Seyfert HM (2002) A 3′UTR variant of the inducible porcine HSP70.2 gene affects mRNA stability. Biochem Biophys Acta 1578:90–94

Singh R, Kølvraa S, Bross P, Christensen K, Gregersen N, Tan Q, Jensen UB, Eiberg H, Rattan SI (2006) Heat-shock protein 70 genes and human longevity: a view from Denmark. Ann N Y Acad Sci 1067(1):301–308

Morano KA, Grant CM, Moye-Rowley WS (2012) The response to heat shock and oxidative stress in Saccharomyces cerevisiae. Genetics 190(4):1157–1195

Li Q, Han J, Du F, Ju Z, Huang J, Wang J, Li R, Wang C, Zhong J (2011) Novel SNPs in HSP70A1A gene and the association of polymorphisms with thermo tolerance traits and tissue specific expression in Chinese Holstein cattle. Mol Biol Rep 38(4):2657–2663

Li QL, Zhang ZF, Xia P, Wang YJ, Wu ZY, Jia YH, Chang SM, Chu MX (2015) A SNP in the 3′-UTR of HSF1 in dairy cattle affects binding of target bta-miR-484. Genet Mol Res 14(4):12746–12755

Matys V, Fricke E, Geffers R, Gößling E, Haubrock M, Hehl R, Hornischer K, Karas D, Kel AE, Kel-Margoulis OV, Kloos DU (2003) TRANSFAC®: transcriptional regulation, from patterns to profiles. Nucleic Acids Res 31(1):374–378

Vejnar CE, Zdobnov EM (2012) MiRmap: comprehensive prediction of microRNA target repression strength. Nucleic Acids Res 40(22):11673–11683

Kishore A, Sodhi M, Kumari P, Mohanty AK, Sadana DK, Kapila N, Khate K, Shandilya U, Kataria RS, Mukesh M (2014) Peripheral blood mononuclear cells: a potential cellular system to understand differential heat shock response across native cattle (Bos indicus), exotic cattle (Bos taurus), and riverine buffaloes (Bubalus bubalis) of India. Cell Stress Chaperones 19(5):613–621

Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3(7):research0034-1

Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2 − ΔΔCT method. Methods 25(4):402–408

Sodhi M, Mukesh M, Kishore A, Mishra BP, Kataria RS, Joshi BK (2013) Novel polymorphisms in UTR and coding region of inducible heat shock protein 70.1 gene in tropically adapted Indian zebu cattle (Bos indicus) and riverine buffalo (Bubalus bubalis). Gene 527(2):606–615

Grosz MD, Skow LC, Stone RT (1994) An AluI polymorphism at the bovine 70 kD heat shock protein-1 (HSP70-1) locus. Anim Genet 25:196

Bhat S, Kumar P, Kashyap N, Deshmukh B, Dige MS, Bhushan B, Chauhan A, Kumar A, Singh G (2016) Effect of heat shock protein 70 polymorphism on thermotolerance in Tharparkar cattle. Vet world 9(2):113

Lamb M, Okimoto R, Broun M, Rosenkranes C (2007) Associations between cattle breed and heat shock protein 70 gene. Res Ser 545:205–206

Wang L, Oberg AL, Asmann YW, Sicotte H, McDonnell SK, Riska SM, Liu W, Steer CJ, Subramanian S, Cunningham JM et al (2009) Genome-wide transcriptional profiling reveals microRNA-correlated genes and biological processes in human lymphoblastoid cell lines. PLoS ONE 4:e5878

Saunders Matthew A, Liang Han, Li Wen-Hsiung (2007) Human polymorphism at microRNAs and microRNA target sites. Proc Natl Acad Sci USA 104(9):3300–3305

Richardson K, Lai CQ, Parnell LD, Lee YC, Ordovas JM (2011) A genome-wide survey for SNPs altering microRNA seed sites identifies functional candidates in GWAS. BMC Genomics 12(1):1

Lacetera N, Bernabucci U, Ronchi B, Scalia D, Nardone A (2002) Moderate summer heat stress does not modify immunological parameters of Holstein dairy cows. Int J Biometeorol 46(1):33–37

Kamwanja LA, Chase CC, Gutierrez JA, Guerriero V, Olson TA, Hammond AC, Hansen PJ (1994) Responses of bovine lymphocytes to heat shock as modified by breed and antioxidant status. J Anim Sci 72(2):438–444

Guerriero V Jr, Raynes DA (1990) Synthesis of heat stress proteins in lymphocytes from livestock. J Anim Sci 68(9):2779–2783

Paula-Lopes FF, Chase CC, Al-Katanani YM, Krininger CE, Rivera RM, Tekin S, Majewski AC, Ocon OM, Olson TA, Hansen PJ (2003) Genetic divergence in cellular resistance to heat shock in cattle: differences between breeds developed in temperate versus hot climates in responses of preimplantation embryos, reproductive tract tissues and lymphocytes to increased culture temperatures. Reproduction 125(2):285–294

Hansen PJ (2004) Physiological and cellular adaptations of zebu cattle to thermal stress. Anim Reprod Sci 82–83:349–360

Zheng Y, Chen KL, Zheng XM, Li HX, Wang GL (2014) Identification and bioinformatics analysis of microRNAs associated with stress and immune response in serum of heat-stressed and normal Holstein cows. Cell Stress Chaperones 19(6):973–981

Dilda F, Gioia G, Pisani L, Restelli L, Lecchi C, Albonico F, Ceciliani F (2012) Escherichia coli lipopolysaccharides and Taphylococcus aureus enterotoxin B differentially modulate inflammatory microRNAs in bovine monocytes. Vet J 192(3):514–516

Chen C-Z, Li L, Lodish HF, Bartel DP (2004) MicroRNAs modulate hematopoietic lineage differentiation. Science 303(5654):83–86

Li Q-J, Chau J, Ebert PJ, Sylvester G, Min H, Liu G, Braich R, Manoharan M, Soutschek J, Skare P (2007) miR-181a is an intrinsic modulator of T cell sensitivity and selection. Cell 129(1):147–161

Islam A, Deuster PA, Devaney JM et al (2013) An exploration of heat tolerance in mice utilizing mRNA and microRNA expression analysis. PLoS ONE 8(8):e72258

Place RF, Noonan EJ (2013) Non-coding RNAs turn up the heat: an emerging layer of novel regulators in the mammalian heat shock response. Cell Stress Chaperones 19(2):159–172

Ruegg PL (2003) Investigation of mastitis problems on farms. Vet Clin N Am Food Anim Pract 19:47–73

Alvarez-Garcia I, Miska E (2005) MicroRNA functions in animal development and human disease. Development 132:4653–4662

Kloosterman WP, Plasterk Ronald HA (2006) The diverse functions of microRNAs in animal development and disease. Dev Cell 11:441–450

Gu Z, Eleswarapu S, Jiang H (2007) Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland. FEBS Lett 581(5):981–988

Ogorevc J, Kunej T, Dovc A, Razpet P (2009) Database of cattle candidate genes and genetic markers for milk production and mastitis. Anim Genet 40(6):832–851

Cui M, Wang Y, Sun B, Xiao Z, Ye L, Zhang X (2014) MiR-205 modulates abnormal lipid metabolism of hepatoma cells via targeting acyl-CoA synthetase long-chain family member 1(ACSL1) mRNA. Biochem Biophys Res Commun 444:270–275

Li Z, Wang H, Chen L, Wang L, Liu X, Ru C, Song A (2014) Identification and characterization of novel and differentially expressed microRNAs in peripheral blood from healthy and mastitis Holstein cattle by deep sequencing. Anim Genet 45(1):20–27