Characterization of the 5′ to 3′ nuclease activity of Thermus aquaticus DNA polymerase on fluorogenic double-stranded probes
Tài liệu tham khảo
Ho, 2004, Structure-specific DNA-induced conformational changes in Taq polymerase revealed by small angle neutron scattering, J Biol Chem, 279, 39146, 10.1074/jbc.M404565200
Holland, 1991, Detection of specific polymerase chain reaction product by utilizing the 5'–3' exonuclease activity of Thermus aquaticus DNA polymerase, Proc Natl Acad Sci U S A, 88, 7276, 10.1073/pnas.88.16.7276
Livak, 1995, Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization, PCR Methods Appl, 4, 357, 10.1101/gr.4.6.357
Tyagi, 1996, Molecular beacons: probes that fluoresce upon hybridization, Nat Biotechnol, 14, 303, 10.1038/nbt0396-303
Wittwer, 1997, Continuous fluorescence monitoring of rapid cycle DNA amplification, Biotechniques, 22, 130, 10.2144/97221bi01
Wilhelm, 2001, Comparison between Taq DNA polymerase and its Stoffel fragment for quantitative real-time PCR with hybridization probes, Biotechniques, 30, 1052, 10.2144/01305rr04
Li, 2002, A new class of homogeneous nucleic acid probes based on specific displacement hybridization, Nucleic Acids Res, 30, E5, 10.1093/nar/30.2.e5
Cheng, 2004, Real-time PCR genotyping using displacing probes, Nucleic Acids Res, 32, e61, 10.1093/nar/gnh055
Gu, 2007, Real-time PCR genotyping of aldehyde dehydrogenase-2 using displacing probes, Clin Biochem, 40, 1325, 10.1016/j.clinbiochem.2007.07.009
Ruan, 2007, Multicolor real-time polymerase chain reaction genotyping of six human platelet antigens using displacing probes, Transfusion, 47, 1637, 10.1111/j.1537-2995.2007.01335.x
Huang, 2007, Thermodynamically modulated partially double-stranded linear DNA probe design for homogeneous real-time PCR, Nucleic Acids Res, 35, e101, 10.1093/nar/gkm551
Kennedy, 2006, Locked nucleic acids for optimizing displacement probes for quantitative real-time PCR, Anal Biochem, 348, 294, 10.1016/j.ab.2005.10.037
Allawi, 2003, Modeling of flap endonuclease interactions with DNA substrate, J Mol Biol, 328, 537, 10.1016/S0022-2836(03)00351-6
Kaiser, 1999, A comparison of eubacterial and archaeal structure-specific 5'-exonucleases, J Biol Chem, 274, 21387, 10.1074/jbc.274.30.21387
Lyamichev, 1993, Structure-specific endonucleolytic cleavage of nucleic acids by eubacterial DNA polymerases, Science, 260, 778, 10.1126/science.7683443
Lyamichev, 1999, Comparison of the 5' nuclease activities of taq DNA polymerase and its isolated nuclease domain, Proc Natl Acad Sci U S A, 96, 6143, 10.1073/pnas.96.11.6143
Ma, 2000, RNA template-dependent 5' nuclease activity of Thermus aquaticus and Thermus thermophilus DNA Polymerases, J Biol Chem, 275, 24693, 10.1074/jbc.M002268200
Tombline, 1996, Heterogeneity of primer extension products in asymmetric PCR is due both to cleavage by a structure-specific exo/endonuclease activity of DNA polymerases and to premature stops, Proc Natl Acad Sci U S A, 93, 2724, 10.1073/pnas.93.7.2724
Kwiatkowski, 1999, Clinical, genetic, and pharmacogenetic applications of the invader assay, Mol Diagn, 4, 353, 10.1016/S1084-8592(99)80012-5
Merkens, 1995, Inactivation of the 5'–3' exonuclease of Thermus aquaticus DNA polymerase, Biochim Biophys Acta, 1264, 243, 10.1016/0167-4781(95)00153-8
Longley, 1990, Characterization of the 5' to 3' exonuclease associated with Thermus aquaticus DNA polymerase, Nucleic Acids Res, 18, 7317, 10.1093/nar/18.24.7317
Marras, 2002, Efficiencies of fluorescence resonance energy transfer and contact-mediated quenching in oligonucleotide probes, Nucleic Acids Res, 30, e122, 10.1093/nar/gnf121
Whitcombe, 1999, Detection of PCR products using self-probing amplicons and fluorescence, Nat Biotechnol, 17, 804, 10.1038/11751
Nazarenko, 1997, A closed tube format for amplification and detection of DNA based on energy transfer, Nucleic Acids Res, 25, 2516, 10.1093/nar/25.12.2516
Zhang, 2003, A novel real-time quantitative PCR method using attached universal template probe, Nucleic Acids Res, 31, e123, 10.1093/nar/gng123