Characterization of natural populations of Nitrobacter spp. using PCR/RFLP analysis of the ribosomal intergenic spacer

Belser LW (1979) Population ecology of nitrifying bacteria. Ann Rev Microbiol 33: 309–333

Belser LW, Mays EL (1982) Use of activity measurements to estimate the efficiency of viable nitrifier counts in soil and sediments. Appl Environ Microbiol 43: 945–948

Beynon JL, Josey DE (1980) Demonstration of heterogeneity in a natural population of Rhizobium phaseoli using variation in intrinsic antibiotic resistance. J Gen Microbiol 118: 437–442

Bock E, Koops H-P, Möller UC, Rudert M (1990) A new facultatively nitrite oxidizing bacterium, Nitrobacter vulgaris sp. nov. Arch Microbiol 153: 105–110

Bock E, Sundermeyer-Klinger H, Stackebrandt E (1983) New facultative lithotrophic nitrite-oxydizing bacteria. Arch Microbiol 136: 281–284

Bradbury WC, Pearson AD, Marko MA, Congi RV, Penner JL (1984) Investigation of a Campylobacter jejuni outbreak by serotyping and chromosomal restriction endonuclease analysis. J Clin Microbiol 19: 342–346

Brenner DJ, McWorter AC, Leete Knutson JK, Steigerwalt AG (1982) Escherichia vulneris: a new species of Enterobacteriaceae associed with human wounds. J Clin Microbiol 15: 1133–1140

Brosius J, Dull TJ, Sleeter DD, Noller HF (1981) Gene organisation and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol 148: 107–127

Fitch WM, Margoliash E (1967) Construction of phylogenetic trees. Science 155: 279–284

Fliermans CB, Bohlool BB, Schmidt EL (1974) Autecological study of chemoautotroph Nitrobacter by immunofluorescence. Appl Microbiol 27: 124–129

Gay G, Corman A (1984) Comparative study of the growth of two strains of Nitrobacter in batch and continuous culture. Microb Ecol 10: 99–105

Hall GH (1986) Nitrification in lakes. In: Prosser JI (ed) Nitrification. SGM IRL Press, Oxford Washington, pp. 127–156

Hartskeerl RA, DeWit MYL, Klatser PR (1989) Polymerase chain reaction for detection of Mycobacterium lepra. J Gen Microbiol 135: 2357–2364

Josserand A, Cleyet-Marel JC (1979) Isolation from soils of Nitrobacter and evidence for novel serotypes using immunofluorescence. Microb Ecol 5: 207–213

Li W-H (1981) Simple method for constructing phylogenetic trees from distance matrices. Proc Natl Acad Sci USA 78: 1085–1089

MacDonald RM (1986) Nitrification in soil: introductory history. In: Prosser JI (ed). Nitrification. SGM IRL Press, Oxford Washington, pp 17–38

Mullis KB, Faloona FA (1987) Specific synthesis of DNA in vitro via a polymerase-catalized chain reaction. Methods Enzymol 155: 335–350

Navarro E, Josserand A, Bernillon B, Bardin R (1987) Aspects microbiens de la nitrification: effets des variations quantitatives et diversité des souches de Nitrobacter. Rev Ecol Biol Sol 24: 591–602

Nazaret S, Cournoyer B. Normand P, Simonet P (1991) Phylogenetic relationships between Frankia genomic species determined using amplified 16S rDNA sequences. J Bacteriol 173: 4072–4078

Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York

Nei M, Li W-H (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76: 5269–5273

Normand P, Cournoyer B, Nazareth S, Simonet P (1992) Study of Frankia ribosomal rRNA genes. Gene (in press)

Pernodet JL, Boccard F, Allegre MT, Cagnat J, Guérineau M (1989) Organisation and nucleotide sequence analysis of a ribosomal RNA gene cluster from Streptomyces ambofaciens. Gene 79: 33–46

Pérolat P, Grimont F, Regnault B, Grimont PAD, Fournié E, Thevenet H, Baranton G (1990) rRNA gene restriction of Leptospira: a molecular typing system. Res Microbiol 141: 159–171

Prosser JI, Cox DJ (1982) Nitrification. In: Burns RG, Slater JH (eds) Experimental microbial ecology. Blackwell Scientific Publications, Oxford, pp. 178–193

Regnery RL, Spruill CL, Plikaytis BD (1991) Genotypic identification of Rickettsiae and estimation of intraspecies sequence divergence for portions of two rickettsial genes. J Bacteriol 173: 1576–1589

Saitou M, Nei M (1987) A Neighbor-Joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 44: 406–425

Schmidt EL, Belser LW (1982) Nitrifying Bacteria. In: Miller RH, Keeney DR (eds) Methods of soil analysis, 2nd edn. Am Soc Agron Madisson, pp. 1027–1042

Schmidt EL, Molina JAE, Chiang C (1973) Isolation of chemoautotrophic nitrifiers from Moroccan soils. Bull Ecol Res Commun 17: 166–167

Seewaldt E, Schleifer KH, Bock E, Stackebrant E (1982) The close phylogenetic relationship of Nitrobacter and Rhodopseudomonas palustris. Arch Microbiol 131: 287–290

Simonet P, Capellano A, Navrro E, Bardin R, Moiroud A (1984) An improved method for lysis of Frankia with achromopeptidase allows detection of new plasmid. Can J Microbiol 30: 1292–1295

Simonet P, Normand P, Moiroud A, Bardin R (1990) Identification of Frankia strains in nodules by hybridization of polymerase chain reaction products with strain-specific oligonucleotide probes. Arch Microbiol 153: 235–240

Sokal RR, Sneath PHA (1963) Principles of numerical taxonomy. WH Freeman, San Francisco

Soriano S, Walker N (1968) Isolation of ammonia oxidizing autotrophic bacteria. J Appl Bacteriol 31: 493–498

Stanley PM, Gage MA, Schmidt EL (1979) Enumeration of specific populations by immunofluorescence. In: Costerton JW, Colwell RR (eds). Native aquatic bacteria enumeration, activity and ecology. ASTM STP 695, pp. 46–55

Stanley PM, Schmidt EL (1981) Serological diversity of Nitrobacter spp. from soil and aquatic habitats. Appl Environ Microbiol 41: 1069–1071

Takahashi M, Yoshioka T, Saijo Y (1982) Nitrogen metabolism in lake Kizaki, Japan. III. Active nitrification in early summer. Arch Hydrobiol 92: 272–286

Tezuka Y (1985) The number of nitrifying bacteria in the north basin of lake Biwa. Jap J Limnol 46: 145–148

Watson SW, Bock E, Harms H, Koops H-P, Hooper AB (1989) Nitrifying bacteria. In: Holt JC, Staley JT, Bryant MP, Pfenning N (eds) Bergey's manual of systematic bacteriology, vol 3. Williams and Wilkins, Baltimore, pp 1808–1834

Watson SW, Valois FW, Waterbury JB, (1981) The family Nitrobacteraceae. In: Starr MP, Stolp P, Truper HG, Balows A, Schlegel HG (eds) The procaryotes, vol I. Springer, Berlin, Heidelberg, New York, pp 1005–1022

Weisburg WG, Barns SM, Pelletier DA, Lane DJ (1991) 16S Ribosomal amplification for phylogenetic study. J Bacteriol 173: 697–703

White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, White TJ (eds) PCR protocols: a guide to methods and applications. Academic Press, INC San Diego, pp 315–322

Winogradsky S (1892) Contributions à la morphoplogie des organismes de la nitrification. Arch Sci Biol St Petersb 1: 88–137

Woese CR (1987) Bacterial evolution. Microbiol Rev 51: 221–271

Woldendorp JW, Laanbroek HJ (1989) Activity of nitrifiers in relation to nitrogen nutrition of plants in natural ecosystems. Plant Soil 115: 217–228

Wood PM (1986) Nitrification as a bacterial energy source. In: Prosser JI (ed) Nitrification. SGM IRL Press, Oxford Washington, pp 39–62

Yoshioka T, Saijo Y (1984) Photoinhibition and recovery of NH 4 + oxidizing bacteria and NO 2 − oxidizing bacteria. J Gen Microbiol 30: 151–166