Characterization of gill transcriptome, SSR/SNP markers and expression analysis of lysozyme LysC gene from Carassius auratus upon Aeromonas hydrophila infection
Aquaculture and Fisheries - 2023
Tài liệu tham khảo
Bai, 2020, Skin transcriptome, tissue distribution of mucin genes and discovery of simple sequence repeats in crucian carp (Carassius auratus), Journal of Fish Biology, 97, 1542, 10.1111/jfb.14524
Bai, 2022, Comparative transcriptome analysis reveals immunoregulation mechanism of lncRNA-mRNA in gill and skin of large yellow croaker (Larimichthys crocea) in response to Cryptocaryon irritans infection, BMC Genomics, 23, 206, 10.1186/s12864-022-08431-w
Cai, 2019, Identification and functional characterization of a c-type lysozyme from Fenneropenaeus penicillatus, Fish & Shellfish Immunology, 88, 161, 10.1016/j.fsi.2019.02.043
Chen, 2021, Gill transcriptome analysis revealed the difference in gene expression between freshwater and seawater acclimated guppy (Poecilia reticulata), Marine Biotechnology, 23, 615, 10.1007/s10126-021-10053-4
Chen, 2018, RNA sequencing, de novo assembly and differential analysis of the gill transcriptome of freshwater climbing perch Anabas testudineus after 6 days of seawater exposure, Journal of Fish Biology, 93, 215, 10.1111/jfb.13653
Clinton, 2021, Gill transcriptomic responses to toxin-producing alga prymnesium parvum in Rainbow Trout, Frontiers in Immunology, 12, 10.3389/fimmu.2021.794593
Dou, 2015, Isolation and characterization of polymorphic EST-SSR and genomic SSR markers in spotted Mandarin fish (Siniperca scherzeri Steindachne), Genetics and Molecular Research, 14, 19317, 10.4238/2015.December.29.41
Du, 2017, Comparative transcriptome and potential antiviral signaling pathways analysis of the gills in the red swamp crayfish, Procambarus clarkii infected with White Spot Syndrome Virus (WSSV), Genetics and Molecular Biology, 40, 168, 10.1590/1678-4685-gmb-2016-0133
Esteban, 2012, An overview of the immunological defenses in fish skin, ISRN Immunology
Fu, 2013, Analysis of two lysozyme genes and antimicrobial functions of their recombinant proteins in Asian seabass, PLoS One, 8, 10.1371/journal.pone.0079743
Gjessing, 2020, The atlantic salmon gill transcriptome response in a natural outbreak of salmon gill pox virus infection reveals new biomarkers of gill pathology and suppression of mucosal defense, Frontiers in Immunology, 11, 2154, 10.3389/fimmu.2020.02154
Gomez, 2013, The mucosal immune system of fish: The evolution of tolerating commensals while fighting pathogens, Fish & Shellfish Immunology, 35, 1729, 10.1016/j.fsi.2013.09.032
Guo, 2019, Gill transcriptome alterations in Macrobrachium rosenbergii under copper exposure, Chemosphere, 233, 796, 10.1016/j.chemosphere.2019.06.025
Huang, 2019, Transcriptome sequencing of the gill and barbel of Southern catfish (Silurus meridionalis) revealed immune responses and novel rhamnose-binding lectins (RBLs), Genomics, 111, 222, 10.1016/j.ygeno.2018.11.018
Hu, 2022, Comprehensive transcriptomics and proteomics analysis of Carassius auratus gills in response to Aeromonas hydrophila, Fish & Shellfish Immunology Report, 4
Hwang, 2011, Ion regulation in fish gills: Recent progress in the cellular and molecular mechanisms, American Journal of Physiology - Regulatory, Integrative and Comparative Physiology, 301, R28, 10.1152/ajpregu.00047.2011
Jia, 2021, Transcriptome analysis of immune-related gene expression in Yellow River carp (Cyprinus carpio var.) after challenge with Flavobacterium columnare, Microbial Pathogenesis, 160, 10.1016/j.micpath.2021.105148
Kameda, 2021, Comparative morphological and molecular studies on the oxygen-chemoreceptive cells in the carotid body and fish gills, Cell and Tissue Research, 384, 255, 10.1007/s00441-021-03421-y
Karthik, 2014, Functional characterization of a c-type lysozyme from Indian shrimp Fenneropenaeus indicus, Probiotics Antimicrobial Proteins, 6, 114, 10.1007/s12602-013-9146-y
Koppang, 2015, 5 - fish mucosal immunity: Gill, 93
Król, 2020, Integration of transcriptome, gross morphology and histopathology in the gill of sea farmed atlantic salmon (Salmo salar): Lessons from multi-site sampling, Frontiers in Genetics, 11, 610, 10.3389/fgene.2020.00610
Lian, 2020, Detection and characterization of Aeromonas salmonicida subsp. salmonicida infection in crucian carp Carassius auratus, Veterinary Research Communications, 44, 61, 10.1007/s11259-020-09773-0
Liao, 2013, Transcriptome analysis of crucian carp (Carassius auratus), an important aquaculture and hypoxia-tolerant species, PLoS One, 8
Li, 2019, Ioxynil and diethylstilbestrol disrupt vascular and heart development in zebrafish, Environment International, 124, 511, 10.1016/j.envint.2019.01.009
Li, 2021, Fish lysozyme gene family evolution and divergent function in early development, Developmental & Comparative Immunology, 114, 10.1016/j.dci.2020.103772
Li, 2017, Grouper (Epinephelus coioides) TCR signaling pathway was involved in response against Cryptocaryon irritans infection, Fish & Shellfish Immunology, 64, 176, 10.1016/j.fsi.2017.03.016
Li, 2021, Transcriptomic responses to heat stress in gill and liver of endangered Brachymystax lenok tsinlingensis, Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 38
Ling, 2019, Comparative transcriptomics and histopathological analysis of crucian carp infection by atypical Aeromonas salmonicida, Fish & Shellfish Immunology, 94, 294, 10.1016/j.fsi.2019.09.006
Lin, 2020, Waterborne microcystin-LR exposure induced chronic inflammatory response via MyD88-dependent toll-like receptor signaling pathway in male zebrafish, The Science of the Total Environment, 702, 10.1016/j.scitotenv.2019.134969
Lin, 2020, Endoderm-derived myeloid-like metaphocytes in zebrafish gill mediate soluble antigen-induced immunity, Cell Reports, 33, 10.1016/j.celrep.2020.108227
Liu, 2022, Integrated application of multi-omics approach and biochemical assays provides insights into physiological responses to saline-alkaline stress in the gills of crucian carp (Carassius auratus), The Science of the Total Environment, 822, 10.1016/j.scitotenv.2022.153622
Livak, 2001, Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method, Methods, 25, 402, 10.1006/meth.2001.1262
Mai, 2014, Cloning and immune characterization of the c-type lysozyme gene in red-spotted grouper, Epinephelus akaara, Fish & Shellfish Immunology, 36, 305, 10.1016/j.fsi.2013.11.002
McDonald, 2012, New insights into the mechanisms controlling urea excretion in fish gills, Respiratory Physiology & Neurobiology, 184, 241, 10.1016/j.resp.2012.06.002
Mo, 2016, Grouper (Epinephelus coioides) BCR signaling pathway was involved in response against Cryptocaryon irritans infection, Fish & Shellfish Immunology, 57, 198, 10.1016/j.fsi.2016.08.011
Nastou, 2016, MBPpred: Proteome-wide detection of membrane lipid-binding proteins using profile Hidden Markov Models, Biochimica et Biophysica Acta, 747, 10.1016/j.bbapap.2016.03.015
Pridgeon, 2013, Chicken-type lysozyme in channel catfish: Expression analysis, lysozyme activity, and efficacy as immunostimulant against Aeromonas hydrophila infection, Fish & Shellfish Immunology, 35, 680, 10.1016/j.fsi.2013.05.018
Shen, 2021, Identification and characterization of the c-type lysozyme gene from a marine fish, Bostrychus sinensis, Developmental & Comparative Immunology, 125, 10.1016/j.dci.2021.104232
Shui, 2020, Molecular characterization of p38 MAPK and tissue-specific expression under cadmium stress in red swamp crayfish (Procambarus clarkii), The Science of the Total Environment, 720, 10.1016/j.scitotenv.2020.137325
Sigang, 2021, Genome-wide identification of microsatellite and development of polymorphic SSR markers for spotted sea bass (Lateolabrax maculatus), Aquaculture Reports, 20, 10.1016/j.aqrep.2021.100677
Son, 2011, Mitogen-activated protein kinases and reactive oxygen species: How can ROS activate MAPK pathways?, Journal of Signal Transduction, 10.1155/2011/792639
Van Herreweghe, 2012, Invertebrate lysozymes: Diversity and distribution, molecular mechanism and in vivo function, Journal of Bio-Science, 37, 327
Vineetha, 2021, Tinospora cordifolia ameliorated titanium dioxide nanoparticle-induced toxicity via regulating oxidative stress-activated MAPK and NRF2/Keap1 signaling pathways in Nile tilapia (Oreochromis niloticus), Comparative Biochemistry and Physiology - Part C: Toxicology & Pharmacology, 240
Wang, 2016, Molecular characterization and expressing analysis of the c-type and g-type lysozymes in Qihe crucian carp Carassius auratus, Fish & Shellfish Immunology, 52, 210, 10.1016/j.fsi.2016.03.040
Wei, 2012, Molecular cloning and characterization of c-type lysozyme gene in orange-spotted grouper, Epinephelus coioides, Fish & Shellfish Immunology, 33, 186, 10.1016/j.fsi.2012.03.027
Wei, 2018, Molecular characterization, expression, and antibacterial activity of a c-type lysozyme isolated from the manila clam, Ruditapes philippinarum, Fish & Shellfish Immunology, 81, 502, 10.1016/j.fsi.2018.07.036
Wen, 2016, Thiamin deficiency induces impaired fish gill immune responses, tight junction protein expression and antioxidant capacity: Roles of the NF-κB, TOR, p38 MAPK and Nrf2 signaling molecules, Fish & Shellfish Immunology, 51, 373, 10.1016/j.fsi.2015.12.038
Xiao, 2011, Coexistence of diploid, triploid and tetraploid crucian carp (Carassius auratus) in natural waters, BMC Genetics, 12, 20, 10.1186/1471-2156-12-20
Xie, 2021, The gill transcriptome reveals unique antimicrobial features that protect Nibea albiflora from Cryptocaryon irritans infection, Journal of Fish Diseases, 44, 1215, 10.1111/jfd.13382
Yang, 2014, Development and characterization of novel SSR markers in Siniperca kneri Garman, Genetics and Molecular Research, 13, 7593, 10.4238/2014.March.24.18
Yang, 2019, Comparative transcriptome analysis reveals osmotic-regulated genes in the gill of Chinese mitten crab (Eriocheir sinensis), PLoS One, 14
Yarza, 2015, c-Jun N-terminal Kinase (JNK) signaling as a therapeutic target for Alzheimer's disease, Frontiers in Pharmacology, 6, 321
Yu, 2013, Characterization of a c-type lysozyme of Scophthalmus maximus: Expression, activity, and antibacterial effect, Fish & Shellfish Immunology, 34, 46, 10.1016/j.fsi.2012.10.007
Zhang, 2018, Identification and characterization of a novel goose-type and chicken-type lysozyme genes in Chinese rare minnow (Gobiocypris rarus) with potent antimicrobial activity, Genes Genomics, 40, 569, 10.1007/s13258-018-0656-6
Zhang, 2021, Gill physiological and transcriptomic response of the threatened freshwater mussel Solenaia oleivora to salinity shift, Comparative Biochemistry and Physiology, Part D: Genomics & Proteomics, 40
Zhou, 2016, Cloning and expression analysis of c-type lysozyme gene in golden pompano, Trachinotus ovatus, Fish & Shellfish Immunology, 54, 580, 10.1016/j.fsi.2016.04.137