Characterization of enteropathogenic and Shiga toxin-producing Escherichia coli in cattle and deer in a shared agroecosystem
Tóm tắt
Từ khóa
Tài liệu tham khảo
Altschul, 1990, Basic local alignment search tool, J. Mol. Biol, 215, 403, 10.1016/S0022-2836(05)80360-2
Bettelheim, 2007, The non-O157 shiga-toxigenic (verocytotoxigenic) Escherichia coli; under-rated pathogens, Crit. Rev. Microbiol, 33, 67, 10.1080/10408410601172172
Beutin, 1993, Prevalence and some properties of verotoxin (Shiga-like toxin)-producing Escherichia coli in 7 different species of healthy domestic animals, J. Clin. Microbiol, 31, 2483, 10.1128/JCM.31.9.2483-2488.1993
Blanchong, 2008, Landscape genetics and the spatial distribution of chronic wasting disease, Biol. Lett, 4, 130, 10.1098/rsbl.2007.0523
Blanchong, 2007, A genealogical basis for disease infection risk in free-ranging wildlife, Biol. Lett, 2, 103
Bolger, 2014, Trimmomatic: a flexible trimmer for Illumina sequence data, Bioinformatics, 30, 2114, 10.1093/bioinformatics/btu170
Brooks, 2005, Non-O157 Shiga toxin-producing Escherichia coli infections in the United States, 1983-2002, J. Infect. Dis, 192, 1422, 10.1086/466536
Chapman, 1997, A 1-year study of Escherichia coli O157 in cattle, sheep, pigs and poultry, Epidemiol. Infect, 119, 245, 10.1017/S0950268897007826
Cobbold, 2004, Comparison of shiga-toxigenic Escherichia coli prevalences among dairy, feedlot, and cow-calf herds in Washington State, Appl. Environ. Microbiol, 70, 4375, 10.1128/AEM.70.7.4375-4378.2004
Darling, 2004, Mauve: multiple alignment of conserved genomic sequence with rearrangements, Genome Res, 14, 1394, 10.1101/gr.2289704
Darling, 2010, progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement, PLoS ONE, 5, e11147, 10.1371/journal.pone.0011147
Dombek, 2000, Use of repetitive DNA sequences and the PCR to differentiate Escherichia coli isolates from human and animal sources, Appl. Environ. Microbiol, 66, 2572, 10.1128/AEM.66.6.2572-2577.2000
Dunn, 2004, Prevalence of Escherichia coli O157:H7 in white-tailed deer from Louisiana, J. Wildl. Dis, 40, 361, 10.7589/0090-3558-40.2.361
Eggert, 2013, Detection and characterization of Shiga toxin-producing Escherichia coli in faeces and lymphatic tissue of free-ranging deer, Epidemiol. Infect, 141, 251, 10.1017/S0950268812000246
Fischer, 2001, Experimental and field studies of Escherichia coli O157:H7 in white-tailed deer, Appl. Environ. Microbiol, 67, 1218, 10.1128/AEM.67.3.1218-1224.2001
Frank, 2011, Epidemic profile of Shiga-toxin-producing Escherichia coli O104:H4 outbreak in Germany, N. Engl. J. Med, 365, 1771, 10.1056/NEJMoa1106483
Gould, 2013, Increased recognition of non-O157 Shiga toxin-producing Escherichia coli infections in the United States during 2000-2010: epidemiologic features and comparison with E. coli O157 infections, Foodborne. Pathog. Dis, 10, 453, 10.1089/fpd.2012.1401
Hahn, 2007, High-resolution analysis of salmonellae from turtles within a headwater spring ecosystem, FEMS Microbiol. Ecol, 60, 148, 10.1111/j.1574-6941.2007.00275.x
Hancock, 1998, Multiple sources of Escherichia coli O157 in feedlots and dairy farms in the northwestern USA, Prev. Vet. Med, 35, 11, 10.1016/S0167-5877(98)00050-6
Holland, 1999, Characterization of eae+ Escherichia coli isolated from healthy and diarrheic calves, Vet. Microbiol, 66, 251, 10.1016/S0378-1135(99)00013-9
Hussein, 2007, Prevalence and pathogenicity of Shiga toxin-producing Escherichia coli in beef cattle and their products, J. Anim. Sci, 85, E63, 10.2527/jas.2006-421
Hussein, 2005, Invited review: prevalence of Shiga toxin-producing Escherichia coli in dairy cattle and their products, J. Dairy Sci, 88, 450, 10.3168/jds.S0022-0302(05)72706-5
Ishii, 2007, Relationship between phylogenetic groups, genotypic clusters, and virulence gene profiles of Escherichia coli strains from diverse human and animal sources, Appl. Environ. Microbiol, 73, 5703, 10.1128/AEM.00275-07
Jasson, 2009, Comparison of enrichment conditions for rapid detection of low numbers of sublethally injured Escherichia coli O157 in food, J. Food Prot, 72, 1862, 10.4315/0362-028X-72.9.1862
Kotloff, 2013, Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study, Lancet, 382, 209, 10.1016/S0140-6736(13)60844-2
Laidler, 2013, Escherichia coli O157:H7 infections associated with consumption of locally grown strawberries contaminated by deer, Clin. Infect. Dis, 57, 1129, 10.1093/cid/cit468
Lindsay, 2008, A simple and improved PCR-based technique for white-tailed deer (Odocoileus virginianus) sex identification, Conserv. Genet, 9, 443, 10.1007/s10592-007-9326-y
Manning, 2008, Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks, Proc. Natl. Acad. Sci. U.S.A, 105, 4868, 10.1073/pnas.0710834105
McDaniel, 1995, A genetic locus of enterocyte effacement conserved among diverse enterobacterial pathogens, Proc. Natl. Acad. Sci. U.S.A, 92, 1664, 10.1073/pnas.92.5.1664
Mohapatra, 2008, Comparative efficacy of five different rep-PCR methods to discriminate Escherichia coli populations in aquatic environments, Water Sci. Technol, 58, 537, 10.2166/wst.2008.424
Mora, 2012, Seropathotypes, phylogroups, stx subtypes, and intimin types of wildlife-carried, Shiga toxin-producing Escherichia coli strains with the same characteristics as human-pathogenic isolates, Appl. Environ. Microbiol, 78, 2578, 10.1128/AEM.07520-11
O'brien, 1984, Shiga-like toxin-converting phages from Escherichia coli strains that cause hemorrhagic colitis or infantile diarrhea, Science, 226, 694, 10.1126/science.6387911
Pacheco, 1997, Random amplification of polymorphic DNA reveals serotype-specific clonal clusters among enterotoxigenic Escherichia coli strains isolated from humans, J. Clin. Microbiol, 35, 1521, 10.1128/JCM.35.6.1521-1525.1997
Persson, 2007, Subtyping method for Escherichia coli shiga toxin (verocytotoxin) 2 variants and correlations to clinical manifestations, J. Clin. Microbiol, 45, 2020, 10.1128/JCM.02591-06
Posse, 2007, Metabolic and genetic profiling of clinical O157 and non-O157 Shiga-toxin-producing Escherichia coli, Res. Microbiol, 158, 591, 10.1016/j.resmic.2007.06.001
Reid, 2000, Parallel evolution of virulence in pathogenic Escherichia coli, Nature, 406, 64, 10.1038/35017546
Renter, 2001, Escherichia coli O157:H7 in free-ranging deer in Nebraska, J. Wildl. Dis, 37, 755, 10.7589/0090-3558-37.4.755
Rice, 1995, Verotoxigenic Escherichia coli O157 colonization of wild deer and range cattle, Vet. Rec, 137, 524, 10.1136/vr.137.20.524
Rounds, 2012, Non-O157 Shiga Toxin-producing Escherichia coli associated with venison, Emerg. Infect. Dis, 18, 279, 10.3201/eid1802.110855
Sasaki, 2013, Prevalence and antimicrobial susceptibility of foodborne bacteria in wild boars (Sus scrofa) and wild deer (Cervus nippon) in Japan, Foodborne Pathog. Dis, 10, 985, 10.1089/fpd.2013.1548
Scallan, 2011, Foodborne illness acquired in the United States–major pathogens, Emerg. Infect. Dis, 17, 7, 10.3201/eid1701.P11101
Tamura, 2013, MEGA6: molecular evolutionary genetics analysis version 6.0, Mol. Biol. Evol, 30, 2725, 10.1093/molbev/mst197
Tozzoli, 2014, Shiga toxin-converting phages and the emergence of new pathogenic Escherichia coli: a world in motion, Front. Cell. Infect. Microbiol, 4, 10.3389/fcimb.2014.00080
Trabulsi, 2002, Typical and atypical enteropathogenic Escherichia coli, Emerg. Infect. Dis, 8, 508, 10.3201/eid0805.010385
Tzschoppe, 2012, A rapid procedure for the detection and isolation of enterohaemorrhagic Escherichia coli (EHEC) serogroup O26, O103, O111, O118, O121, O145 and O157 strains and the aggregative EHEC O104:H4 strain from ready-to-eat vegetables, Int. J. Food Microbiol, 152, 19, 10.1016/j.ijfoodmicro.2011.10.009
Wagner, 2006, Estimating relatedness and relationships using microsatellite loci with null alleles, Heredity (Edinb), 97, 336, 10.1038/sj.hdy.6800865
Wilberg, 2004, GENECAP: a program for analysis of nuclear data for capture-recapture population estimation, Mol. Ecol. Notes, 4, 783, 10.1111/j.1471-8286.2004.00797.x
Wilson, 1997, Characterization of microsatellite loci in caribou Rangifer tarandus, and their use in other artiodactyls, Mol. Ecol, 6, 697, 10.1046/j.1365-294X.1997.00237.x