Characterization of STIP, a multi-domain nuclear protein, highly conserved in metazoans, and essential for embryogenesis in Caenorhabditis elegans

Experimental Cell Research - Tập 313 - Trang 1460-1472 - 2007
Qiongmei Ji1, Cheng-Han Huang1, Jianbin Peng1, Sarwar Hashmi2, Tianzhang Ye1, Ying Chen1
1Laboratory of Biochemistry and Molecular Genetics, Lindsley F. Kimball Research Institute, New York Blood Center, 310 E 67th Street, New York, NY 10021, USA
2Developmental Biology, Lindsley F. Kimball Research Institute, New York Blood Center, New York, NY 10021, USA

Tài liệu tham khảo

Aravind, 1999, G-patch: a new conserved domain in eukaryotic RNA-processing proteins and type D retroviral polyproteins, Trends Biochem. Sci., 24, 342, 10.1016/S0968-0004(99)01437-1 Shih, 2002, Identification of septin-interacting proteins and characterization of the Smt3/SUMO-conjugation system in Drosophila, J. Cell Sci., 115, 1259, 10.1242/jcs.115.6.1259 Paine, 2000, A tuftelin-interacting protein (TIP39) localizes to the apical secretory pole of mouse ameloblasts, J. Biol. Chem., 275, 22284, 10.1074/jbc.M000118200 Beausoleil, 2004, Large-scale characterization of HeLa cell nuclear phosphoproteins, Proc. Natl. Acad. Sci. U. S. A., 101, 12130, 10.1073/pnas.0404720101 Wen, 2005, Structural organization and cellular localization of tuftelin-interacting protein 11 (TFIP11), Cell. Mol. Life Sci., 62, 1038, 10.1007/s00018-005-4547-z Giot, 2003, A protein interaction map of Drosophila melanogaster, Science, 302, 1727, 10.1126/science.1090289 Li, 2004, A map of the interactome network of the metazoan C. elegans, Science, 303, 540, 10.1126/science.1091403 Zhou, 2002, Comprehensive proteomic analysis of the human spliceosome, Nature, 419, 182, 10.1038/nature01031 Rappsilber, 2002, Large-scale proteomic analysis of the human spliceosome, Genome Res., 12, 1231, 10.1101/gr.473902 Jurica, 2003, Pre-mRNA splicing: a wash in a sea of proteins, Mol. Cell, 12, 5, 10.1016/S1097-2765(03)00270-3 Brenner, 1974, The genetics of Caenorhabditis elegans, Genetics, 77, 71, 10.1093/genetics/77.1.71 Ji, 2006, CeRh1 (rhr-1) is a dominant Rhesus gene essential for embryonic development and hypodermal function in Caenorhabditis elegans, Proc. Natl. Acad. Sci. U. S. A., 130, 5581 Huang, 2005, Evolutionary conservation and diversification of Rh family genes and proteins, Proc. Natl. Acad. Sci. U. S. A., 102, 15512, 10.1073/pnas.0507886102 Altschul, 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic acids Res., 25, 3389, 10.1093/nar/25.17.3389 Edgar, 2004, MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Res., 32, 1792, 10.1093/nar/gkh340 Kumar, 2001, MEGA2: molecular evolutionary genetics analysis software, Bioinformatics, 17, 1244, 10.1093/bioinformatics/17.12.1244 Lupas, 1991, Predicting coiled coils from protein sequences, Science, 252, 1162, 10.1126/science.252.5009.1162 Cuff, 1998, Pred: a consensus secondary structure prediction server, Bioinformatics, 14, 892, 10.1093/bioinformatics/14.10.892 Hashmi, 2004, The Caenorhabditis elegans cathepsin Z-like cysteine protease, Ce-CPZ-1, has a multifunctional role during the worms' development, J. Biol. Chem., 279, 6035, 10.1074/jbc.M312346200 Harlow, 1988 Fire, 1986, Integrative transformation of Caenorhabditis elegans, EMBO J., 5, 2673, 10.1002/j.1460-2075.1986.tb04550.x Mello, 1991, Efficient gene transfer in C. elegans: extrachromosomal maintenance and integration of transforming sequences, EMBO J., 10, 3959, 10.1002/j.1460-2075.1991.tb04966.x Kramer, 1990, The Caenorhabditis elegans rol-6 gene, which interacts with the sqt-1 collagen gene to determine organismal morphology, encodes a collagen, Mol. Cell. Biol., 10, 2081 Britton, 1998, Regulation of the Caenorhabditis elegans gut cysteine protease gene cpr-1: requirement for GATA motifs, J. Mol. Biol., 283, 15, 10.1006/jmbi.1998.2093 Fire, 1998, Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans, Nature, 391, 806, 10.1038/35888 Tabara, 1998, RNAi in C. elegans: soaking in the genome sequence, Science, 282, 430, 10.1126/science.282.5388.430 Britton, 2002, A cathepsin L protease essential for Caenorhabditis elegans embryogenesis is functionally conserved in parasitic nematodes, Mol. Biochem. Parasitol., 122, 21, 10.1016/S0166-6851(02)00066-X Blumenthal, 1995, Trans-splicing and polycistronic transcription in Caenorhabditis elegans, Trends Genet., 11, 132, 10.1016/S0168-9525(00)89026-5 Sönnichsen, 2005, Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans, Nature, 434, 462, 10.1038/nature03353 Brunkow, 2001, Disruption of a new forkhead/winged-helix protein, scurfin, results in the fatal lymphoproliferative disorder of the scurfy mouse, Nat. Genet., 27, 68, 10.1038/83784 Sampson, 2003, SF4 and SFRS14, two related putative splicing factors on human chromosome 19p13.11, Gene, 305, 91, 10.1016/S0378-1119(02)01230-1 Niedick, 2004, Nucleolar localization and mobility analysis of the NF-kappaB repressing factor NRF, J. Cell Sci., 117, 3447, 10.1242/jcs.01129 Zhang, 2005, MOS2, a protein containing G-patch and KOW motifs, is essential for innate immunity in Arabidopsis thaliana, Curr. Biol., 15, 1936, 10.1016/j.cub.2005.09.038 Sudol, 1995, Characterization of a novel protein-binding module-WW domain, FEBS Lett., 369, 67, 10.1016/0014-5793(95)00550-S