Characterisation of above-ground endophytic and soil fungal communities associated with dieback-affected and healthy plants in five exotic invasive species
Tài liệu tham khảo
Abarenkov, 2010, The UNITE database for molecular identification of fungi–recent updates and future perspectives, New Phytol., 186, 281, 10.1111/j.1469-8137.2009.03160.x
Aghighi, 2014, A conceptual model to describe the decline of European blackberry (Rubus anglocandicans), a weed of national significance in Australia, Plant Dis., 98, 580, 10.1094/PDIS-11-13-1124-FE
Angelini, 2012, The endophytic fungal communities associated with the leaves and roots of the common reed (Phragmites australis) in Lake Trasimeno (Perugia, Italy) in declining and healthy stands, Fungal Ecol., 5, 683, 10.1016/j.funeco.2012.03.001
Arias, 2013, First report of Fusarium proliferatum causing root rot on soybean (Glycine max) in the United States, Plant Dis., 97, 1557, 10.1094/PDIS-11-12-1059-RE
Aschehoug, 2014, Fungal endophyte increases the allelopathic effects of an invasive forb, Oecologia, 175, 285, 10.1007/s00442-014-2891-0
Barbetti, 2014, Opportunities and challenges for improved management of foliar pathogens in annual clover pastures across southern Australia, Crop Pasture Sci., 65, 1249, 10.1071/CP14117
Bebawi, 2007, The biology of Australian weeds 47. Jatropha gossypiifolia L, Plant Prot. Q., 22, 42
Bengtsson-Palme, 2013, Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data, Methods Ecol. Evol., 4, 914
Berg, 2009, Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere, FEMS Microbiol. Ecol., 68, 1, 10.1111/j.1574-6941.2009.00654.x
Boyce, 2014, The beginning of the end? Extensive dieback of an open-grown Amur honeysuckle stand in northern Kentucky, USA, Biol. Invasions, 16, 1, 10.1007/s10530-014-0656-7
Brown, 2006, Athel pine in the Northern Territory: a strategic approach to eradication
Burgess, 2012, Fusarium: a ubiquitous fungus of global significance, Microbiol. Aust., 33, 22, 10.1071/MA12022
Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nat. Methods, 7, 335, 10.1038/nmeth.f.303
Cosme, 2016, A fungal endophyte helps plants to tolerate root herbivory through changes in gibberellin and jasmonate signaling, New Phytol., 211, 1065, 10.1111/nph.13957
Diez, 2010, Negative soil feedbacks accumulate over time for non-native plant species, Ecol. Lett., 13, 803, 10.1111/j.1461-0248.2010.01474.x
Diplock, 2015
Dostál, 2013, The impact of an invasive plant changes over time, Ecol. Lett., 16, 1277, 10.1111/ele.12166
Douanla-Meli, 2013, Fungal endophyte diversity and community patterns in healthy and yellowing leaves of Citrus limon, Fungal Ecol., 6, 212, 10.1016/j.funeco.2013.01.004
Dowd, 2008, Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP), BMC Microbiol., 8, 125, 10.1186/1471-2180-8-125
Edgar, 2013, UPARSE: highly accurate OTU sequences from microbial amplicon reads, Nat. Methods, 10, 996, 10.1038/nmeth.2604
Ek-Ramos, 2013, Spatial and temporal variation in fungal endophyte communities isolated from cultivated cotton (Gossypium hirsutum), PLoS One, 8, e66049, 10.1371/journal.pone.0066049
Flory, 2013, Pathogen accumulation and long-term dynamics of plant invasions, J. Ecol., 101, 607
Filion, 2004, Molecular profiling of rhizosphere microbial communities associated with healthy and diseased black spruce (Picea mariana) seedlings grown in a nursery, Appl. Environ. Microb., 70, 3541, 10.1128/AEM.70.6.3541-3551.2004
Gardes, 1993, ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts, Mol. Ecol., 2, 113, 10.1111/j.1365-294X.1993.tb00005.x
Ghaemi, 2011, Effects of water stress and Fusarium oxysporum f. sp. lycoperseci on growth (leaf area, plant height, shoot dry matter) and shoot nitrogen content of tomatoes under greenhouse conditions, Iran Agric. Res., 29, 51
Good, 1953, The population frequencies of species and the estimation of population parameters, Biometrika, 40, 237, 10.1093/biomet/40.3-4.237
Haque, 2015
Junker, 2012, A fine line–endophytes or pathogens in Arabidopsis thaliana, Fungal Ecol., 5, 657, 10.1016/j.funeco.2012.05.002
Klosterman, 2009, Diversity, pathogenicity, and management of Verticillium species, Annu. Rev. Phytopathol., 47, 39, 10.1146/annurev-phyto-080508-081748
Kohout, 2013, A diverse fungal community associated with Pseudorchis albida (Orchidaceae) roots, Fungal Ecol., 6, 50, 10.1016/j.funeco.2012.08.005
Kosiak, 2004, Alternaria and Fusarium in Norwegian grains of reduced quality—a matched pair sample study, Int. J. Food Microbiol., 93, 51, 10.1016/j.ijfoodmicro.2003.10.006
Lee, 2012, Phylogenetic analysis and discoloration characteristics of major molds inhabiting woods. Part 3. Genus Cladosporium, Holzforschung, 66, 537, 10.1515/hf.2011.184
Lekberg, 2013, Severe plant invasions can increase mycorrhizal fungal abundance and diversity, ISME J., 7, 1424, 10.1038/ismej.2013.41
Li, 2009, Density-dependent effects on the dieback of exotic species Spartina anglica in coastal China, Ecol. Eng., 35, 544, 10.1016/j.ecoleng.2008.03.001
Li, 2014, Fungal pathogen accumulation at the expense of plant-beneficial fungi as a consequence of consecutive peanut monoculturing, Soil Biol. Biochem., 72, 11, 10.1016/j.soilbio.2014.01.019
Linaldeddu, 2011, Variation of endophytic cork oak-associated fungal communities in relation to plant health and water stress, For. Pathol., 41, 193, 10.1111/j.1439-0329.2010.00652.x
Lonsdale, 1992, The biology of Mimosa pigra, 11
Lucero, 2011, Endophyte microbiome diversity in micropropagated Atriplex canescens and Atriplex torreyi var griffithsii, PLoS One, 6, e17693, 10.1371/journal.pone.0017693
Mahadevakumar, 2015, First report of leaf spot disease caused by Epicoccum nigrum on Lablab purpureus in India, Plant Dis., 98, 284, 10.1094/PDIS-07-13-0798-PDN
Mandyam, 2008, Seasonal and temporal dynamics of arbuscular mycorrhizal and dark septate endophytic fungi in a tallgrass prairie ecosystem are minimally affected by nitrogen enrichment, Mycorrhiza, 18, 145, 10.1007/s00572-008-0165-6
Mangla, 2008, Exotic invasive plant accumulates native soil pathogens which inhibit native plants, J. Ecol., 96, 58
March, 2000
Mei, 2014, Geographical and temporal changes of foliar fungal endophytes associated with the invasive plant Ageratina adenophora, Microb. Ecol., 67, 402, 10.1007/s00248-013-0319-8
Mejía, 2014, Pervasive effects of a dominant foliar endophytic fungus on host genetic and phenotypic expression in a tropical tree, Front. Microbiol., 5, 479
Meyer, 2014, Does Fusarium-caused seed mortality contribute to Bromus tectorum stand failure in the Great Basin?, Weed Res., 54, 511, 10.1111/wre.12094
Nam, 2015, Cladosporium cladosporioides and C. tenuissimum cause blossom blight in strawberry in Korea, Mycobiology, 43, 354, 10.5941/MYCO.2015.43.3.354
Nicoletti, 2014, Endophytism of Penicillium species in woody plants, Open Mycol. J., 8, 1, 10.2174/1874437001408010001
Nijjer, 2007, Negative plant–soil feedbacks may limit persistence of an invasive tree due to rapid accumulation of soil pathogens, Proc. R. Soc. B Biol. Sci., 274, 2621, 10.1098/rspb.2007.0804
Penton, 2014, Fungal community structure in disease suppressive soils assessed by 28S LSU gene sequencing, PLoS One, 9, e93893, 10.1371/journal.pone.0093893
Pitt, 2010, Identification, distribution and current taxonomy of Botryosphaeriaceae species associated with grapevine decline in New South Wales and South Australia, Aust. J. Grape Wine R., 16, 258, 10.1111/j.1755-0238.2009.00087.x
Porras-Alfaro, 2011, Hidden fungi, emergent properties: endophytes and microbiomes, Annu. Rev. Phytopathol., 49, 291, 10.1146/annurev-phyto-080508-081831
Quince, 2009, Accurate determination of microbial diversity from 454 pyrosequencing data, Nat. Methods, 6, 639, 10.1038/nmeth.1361
Raaijmakers, 2009, The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms, Plant Soil, 321, 341, 10.1007/s11104-008-9568-6
Raghavendra, 2013, The contribution of foliar endophytes to quantitative resistance to Melampsora rust, New Phytol., 197, 909, 10.1111/nph.12066
Raghavendra, 2013, Exclusionary interactions among diverse fungi infecting developing seeds of Centaurea stoebe, FEMS Microbiol. Ecol., 84, 143, 10.1111/1574-6941.12045
Rodriguez, 2009, Fungal endophytes: diversity and functional roles, New Phytol., 182, 314, 10.1111/j.1469-8137.2009.02773.x
Sacdalan, 2015
Sakalidis, 2011, Endophytes as potential pathogens of the baobab species Adansonia gregorii: a focus on the Botryosphaeriaceae, Fungal Ecol., 4, 1, 10.1016/j.funeco.2010.06.001
Schloss, 2011, Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies, PLoS One, 6, e27310, 10.1371/journal.pone.0027310
Schulz, 2005, The endophytic continuum, Mycol. Res., 109, 661, 10.1017/S095375620500273X
Shipunov, 2008, Hidden diversity of endophytic fungi in an invasive plant, Am. J. Bot., 95, 1096, 10.3732/ajb.0800024
Siddique, 2016, A cost-effective and efficient strategy for Illumina sequencing of fungal communities: a case study of beech endophytes identified elevation as main explanatory factor for diversity and community composition, Fungal Ecol., 20, 175, 10.1016/j.funeco.2015.12.009
Slippers, 2007, Botryosphaeriaceae as endophytes and latent pathogens of woody plants: diversity, ecology and impact, Fungal Biol. Rev., 21, 90, 10.1016/j.fbr.2007.06.002
Steinrucken, 2016, Endophyte community composition is associated with dieback occurrence in an invasive tree, Plant Soil, 10.1007/s11104-015-2529-y
Toju, 2013, Community composition of root-associated fungi in a Quercus-dominated temperate forest:“codominance” of mycorrhizal and root-endophytic fungi, Ecol. Evol., 3, 1281, 10.1002/ece3.546
van Klinken, 2012, 437
White, 2007, Comparison of fungal endophyte communities in the invasive panicoid grass Hyparrhenia hirta and the native grass Bothriochloa macra, Aust. J. Bot., 55, 178, 10.1071/BT06125
White, 1990, Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, 315