Cell lysates and egg white create homeostatic microenvironment for gene expression in cell-free system

Synthetic and Systems Biotechnology - Tập 3 - Trang 211-216 - 2018
Yang Liu1, Dayong Yang1
1School of Chemical Engineering and Technology, Key Laboratory of Systems Bioengineering (Ministry of Education), Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin University, Tianjin 300072, PR China

Tài liệu tham khảo

Brown, 1986, A receptor-mediated pathway for cholesterol homeostasis, Science, 232, 34, 10.1126/science.3513311 Butcher, 1996, Lymphocyte homing and homeostasis, Science, 272, 60, 10.1126/science.272.5258.60 VanderHeiden, 1997, Bcl-x(L) regulates the membrane potential and volume homeostasis of mitochondria, Cell, 91, 627, 10.1016/S0092-8674(00)80450-X Rakoff-Nahoum, 2004, Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasis, Cell, 118, 229, 10.1016/j.cell.2004.07.002 Savitski, 2018, Multiplexed proteome dynamics profiling reveals mechanisms controlling protein homeostasis, Cell, 173, 260, 10.1016/j.cell.2018.02.030 Zimmerman, 1991, Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli, J Mol Biol, 222, 599, 10.1016/0022-2836(91)90499-V Zhou, 2008, Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences, 375 van den Berg, 1999, Effects of macromolecular crowding on protein folding and aggregation, Embo J, 18, 6927, 10.1093/emboj/18.24.6927 Cheung, 2005, Molecular crowding enhances native state stability and refolding rates of globular proteins, Proc Natl Acad Sci USA, 102, 4753, 10.1073/pnas.0409630102 Dhar, 2010, Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding, Proc Natl Acad Sci USA, 107, 17586, 10.1073/pnas.1006760107 Kuznetsova, 2014, What macromolecular crowding can do to a protein, Int J Mol Sci, 15, 23090, 10.3390/ijms151223090 Zimmerman, 1987, Macromolecular crowding increases binding of DNA polymerase to DNA: an adaptive effect, Proc Natl Acad Sci USA, 84, 1871, 10.1073/pnas.84.7.1871 Akabayov, 2013, Impact of macromolecular crowding on DNA replication, Nat Commun, 4, 10, 10.1038/ncomms2620 Minton, 2000, Implications of macromolecular crowding for protein assembly, Curr Opin Struct Biol, 10, 34, 10.1016/S0959-440X(99)00045-7 Kim, 2010, Macromolecular crowding effects on protein-protein binding affinity and specificity, J Chem Phys, 133, 7, 10.1063/1.3516589 Richter, 2007, Experimental evidence for the influence of molecular crowding on nuclear architecture, J Cell Sci, 120, 1673, 10.1242/jcs.03440 Zimmerman, 1993, Macromolecular crowding: biochemical, biophysical, and physiological consequences, Annu Rev Biophys Biomol Struct, 22, 27, 10.1146/annurev.bb.22.060193.000331 Ellis, 2001, Macromolecular crowding: obvious but underappreciated, Trends BiochemSci, 26, 597, 10.1016/S0968-0004(01)01938-7 Minton, 2001, The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media, J Biol Chem, 276, 10577, 10.1074/jbc.R100005200 Mika, 2011, Macromolecule diffusion and confinement in prokaryotic cells, Curr Opin Biotechnol, 22, 117, 10.1016/j.copbio.2010.09.009 Carlson, 2012, Cell-free protein synthesis: applications come of age, Biotechnol Adv, 30, 1185, 10.1016/j.biotechadv.2011.09.016 Martorell, 2011, A natural and readily available crowding agent: NMR studies of proteins in hen egg white, Proteins, 79, 1408, 10.1002/prot.22967 Poggi, 2015, Macromolecular crowding and the steady-state kinetics of malate dehydrogenase, Biochemistry, 54, 260, 10.1021/bi5011255 Schwanhausser, 2011, Global quantification of mammalian gene expression control, Nature, 473, 337, 10.1038/nature10098 Gnutt, 2016, The macromolecular crowding effect - from in vitro into the cell, Biol Chem, 397, 37, 10.1515/hsz-2015-0161 van den Berg, 2017, Microorganisms maintain crowding homeostasis, Nat Rev Microbiol, 15, 309, 10.1038/nrmicro.2017.17 Tan, 2013, Molecular crowding shapes gene expression in synthetic cellular nanosystems, Nat Nanotechnol, 8, 602, 10.1038/nnano.2013.132