Caught in a TRAP: substrate-binding proteins in secondary transport

Trends in Microbiology - Tập 18 - Trang 471-478 - 2010
Marcus Fischer1, Qian Yi Zhang2, Roderick E. Hubbard1, Gavin H. Thomas2
1York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, UK
2Department of Biology (Area 10), University of York, Wentworth Way, Heslington, York, YO10 5DD, UK

Tài liệu tham khảo

Davidson, 2004, ATP-binding cassette transporters in bacteria, Annu. Rev. Biochem., 73, 241, 10.1146/annurev.biochem.73.011303.073626 Davidson, 2008, Structure, function, and evolution of bacterial ATP-binding cassette systems, Microbiol. Mol. Biol. Rev., 72, 317, 10.1128/MMBR.00031-07 Oldham, 2007, Crystal structure of a catalytic intermediate of the maltose transporter, Nature, 450, 515, 10.1038/nature06264 Hollenstein, 2007, Structure of an ABC transporter in complex with its binding protein, Nature, 446, 213, 10.1038/nature05626 Forward, 1997, TRAP transporters: a new family of periplasmic solute transport systems encoded by the dctPQM genes of Rhodobacter capsulatus and by homologs in diverse Gram-negative bacteria, J. Bacteriol., 179, 5482, 10.1128/jb.179.17.5482-5493.1997 Kelly, 2001, The tripartite ATP-independent periplasmic (TRAP) transporters of bacteria and archaea, FEMS Microbiol. Rev., 25, 405, 10.1111/j.1574-6976.2001.tb00584.x Mulligan, 2007, Tripartite ATP-independent periplasmic transporters: application of a relational database for genome-wide analysis of transporter gene frequency and organization, J. Mol. Microbiol. Biotechnol., 12, 218, 10.1159/000099643 Widenhorn, 1988, Cloning and properties of the Salmonella typhimurium tricarboxylate transport operon in Escherichia coli, J. Bacteriol., 170, 883, 10.1128/jb.170.2.883-888.1988 Winnen, 2003, The tripartite tricarboxylate transporter (TTT) family, Res. Microbiol., 154, 457, 10.1016/S0923-2508(03)00126-8 Rabus, 1999, TRAP transporters: an ancient family of extracytoplasmic solute-receptor-dependent secondary active transporters, Microbiology, 145, 3431, 10.1099/00221287-145-12-3431 Prakash, 2003, The ion transporter superfamily, Biochim. Biophys. Acta, 1618, 79, 10.1016/j.bbamem.2003.10.010 Rosen, 2002, Biochemistry of arsenic detoxification, FEBS Lett., 529, 86, 10.1016/S0014-5793(02)03186-1 Severi, 2005, Sialic acid transport in Haemophilus influenzae is essential for lipopolysaccharide sialylation and serum resistance and is dependent on a novel tripartite ATP-independent periplasmic transporter, Mol. Microbiol., 58, 1173, 10.1111/j.1365-2958.2005.04901.x Allen, 2005, Novel sialic acid transporter of Haemophilus influenzae, Infect. Immun., 73, 5291, 10.1128/IAI.73.9.5291-5300.2005 Grammann, 2002, New type of osmoregulated solute transporter identified in halophilic members of the bacteria domain: TRAP transporter TeaABC mediates uptake of ectoine and hydroxyectoine in Halomonas elongata DSM 2581(T), J. Bacteriol., 184, 3078, 10.1128/JB.184.11.3078-3085.2002 Tetsch, 2002, The substrate-binding protein TeaA of the osmoregulated ectoine transporter TeaABC from Halomonas elongata: purification and characterization of recombinant TeaA, FEMS Microbiol. Lett., 211, 213, 10.1111/j.1574-6968.2002.tb11227.x Lecher, 2009, The crystal structure of UehA in complex with ectoine-A comparison with other TRAP-T binding proteins, J. Mol. Biol., 389, 58, 10.1016/j.jmb.2009.03.077 Mulligan, 2009, The substrate-binding protein imposes directionality on an electrochemical sodium gradient-driven TRAP transporter, Proc. Natl. Acad. Sci. U. S. A., 106, 1778, 10.1073/pnas.0809979106 Thomas, 2006, Novel ligands for the extracellular solute receptors of two bacterial TRAP transporters, Microbiology, 152, 187, 10.1099/mic.0.28334-0 Sweet, 1979, Purification and properties of a citrate-binding transport component, the C protein of Salmonella typhimurium, Can. J. Biochem., 57, 710, 10.1139/o79-089 Kay, 1978, Citrate transport in Salmonella typhimurium, Arch. Biochem. Biophys., 190, 270, 10.1016/0003-9861(78)90276-X Antoine, 2003, Overrepresentation of a gene family encoding extracytoplasmic solute receptors in Bordetella, J. Bacteriol., 185, 1470, 10.1128/JB.185.4.1470-1474.2003 Brocker, 2009, Citrate utilization by Corynebacterium glutamicum is controlled by the CitAB two-component system through positive regulation of the citrate transport genes citH and tctCBA, J. Bacteriol., 191, 3869, 10.1128/JB.00113-09 Fukami-Kobayashi, 1999, Domain dislocation: a change of core structure in periplasmic binding proteins in their evolutionary history, J. Mol. Biol., 286, 279, 10.1006/jmbi.1998.2454 Lee, 1999, Treponema pallidum TroA is a periplasmic zinc-binding protein with a helical backbone, Nat. Struct. Biol., 6, 628, 10.1038/10677 Wilkinson, 2003, Crystal structures of periplasmic solute-binding proteins in ABC transport complexes illuminate their function, 187 Cuneo, 2008, Structural analysis of a periplasmic binding protein in the tripartite ATP-independent transporter family reveals a tetrameric assembly that may have a role in ligand transport, J. Biol. Chem., 283, 32812, 10.1074/jbc.M803595200 Muller, 2006, Conservation of structure and mechanism in primary and secondary transporters exemplified by SiaP, a sialic acid binding virulence factor from Haemophilus influenzae, J. Biol. Chem., 281, 22212, 10.1074/jbc.M603463200 Berntsson, 2010, A structural classification of substrate-binding proteins, FEBS Lett., 584, 2606, 10.1016/j.febslet.2010.04.043 Gonin, 2007, Crystal structures of an extracytoplasmic solute receptor from a TRAP transporter in its open and closed forms reveal a helix-swapped dimer requiring a cation for alpha-keto acid binding, BMC Struct. Biol., 7, 11, 10.1186/1472-6807-7-11 Johnston, 2008, Characterization of the N-acetyl-5-neuraminic acid-binding site of the extracytoplasmic solute receptor (SiaP) of nontypeable Haemophilus influenzae strain 2019, J. Biol. Chem., 283, 855, 10.1074/jbc.M706603200 Akiyama, 2009, Crystal structure of a periplasmic substrate-binding protein in complex with calcium lactate, J. Mol. Biol., 392, 559, 10.1016/j.jmb.2009.07.043 Shi, 2009, Trapping open and closed forms of FitE: a group III periplasmic binding protein, Proteins, 75, 598, 10.1002/prot.22272 Hvorup, 2007, Asymmetry in the structure of the ABC transporter-binding protein complex BtuCD-BtuF, Science, 317, 1387, 10.1126/science.1145950 Takahashi, 2004, Structure of the Thermus thermophilus putative periplasmic glutamate/glutamine-binding protein, Acta Crystallogr. D. Biol. Crystallogr., 60, 1846, 10.1107/S0907444904019420 Bakermans, 2009, Development and use of genetic system to identify genes required for efficient low-temperature growth of Psychrobacter arcticus 273–4, Extremophiles, 13, 21, 10.1007/s00792-008-0193-3 Herrou, 2007, Structure-based mechanism of ligand binding for periplasmic solute-binding protein of the Bug family, J. Mol. Biol., 373, 954, 10.1016/j.jmb.2007.08.006 Huvent, 2006, Crystal structure of Bordetella pertussis BugD solute receptor unveils the basis of ligand binding in a new family of periplasmic binding proteins, J. Mol. Biol., 356, 1014, 10.1016/j.jmb.2005.11.096 Huvent, 2006, Structural analysis of Bordetella pertussis BugE solute receptor in a bound conformation, Acta Crystallogr. D Biol. Crystallogr., 62, 1375, 10.1107/S0907444906032653 Rucktooa, 2007, Crystal structures of two Bordetella pertussis periplasmic receptors contribute to defining a novel pyroglutamic acid binding DctP subfamily, J. Mol. Biol., 370, 93, 10.1016/j.jmb.2007.04.047 Kuhlmann, 2008, 1.55 A structure of the ectoine binding protein TeaA of the osmoregulated TRAP-transporter TeaABC from Halomonas elongata, Biochemistry, 47, 9475, 10.1021/bi8006719 Takahashi, 2004, Structure and implications for the thermal stability of phosphopantetheine adenylyltransferase from Thermus thermophilus, Acta Crystallogr. D Biol. Crystallogr., 60, 97, 10.1107/S0907444903025319