Caught in a TRAP: substrate-binding proteins in secondary transport
Tài liệu tham khảo
Davidson, 2004, ATP-binding cassette transporters in bacteria, Annu. Rev. Biochem., 73, 241, 10.1146/annurev.biochem.73.011303.073626
Davidson, 2008, Structure, function, and evolution of bacterial ATP-binding cassette systems, Microbiol. Mol. Biol. Rev., 72, 317, 10.1128/MMBR.00031-07
Oldham, 2007, Crystal structure of a catalytic intermediate of the maltose transporter, Nature, 450, 515, 10.1038/nature06264
Hollenstein, 2007, Structure of an ABC transporter in complex with its binding protein, Nature, 446, 213, 10.1038/nature05626
Forward, 1997, TRAP transporters: a new family of periplasmic solute transport systems encoded by the dctPQM genes of Rhodobacter capsulatus and by homologs in diverse Gram-negative bacteria, J. Bacteriol., 179, 5482, 10.1128/jb.179.17.5482-5493.1997
Kelly, 2001, The tripartite ATP-independent periplasmic (TRAP) transporters of bacteria and archaea, FEMS Microbiol. Rev., 25, 405, 10.1111/j.1574-6976.2001.tb00584.x
Mulligan, 2007, Tripartite ATP-independent periplasmic transporters: application of a relational database for genome-wide analysis of transporter gene frequency and organization, J. Mol. Microbiol. Biotechnol., 12, 218, 10.1159/000099643
Widenhorn, 1988, Cloning and properties of the Salmonella typhimurium tricarboxylate transport operon in Escherichia coli, J. Bacteriol., 170, 883, 10.1128/jb.170.2.883-888.1988
Winnen, 2003, The tripartite tricarboxylate transporter (TTT) family, Res. Microbiol., 154, 457, 10.1016/S0923-2508(03)00126-8
Rabus, 1999, TRAP transporters: an ancient family of extracytoplasmic solute-receptor-dependent secondary active transporters, Microbiology, 145, 3431, 10.1099/00221287-145-12-3431
Prakash, 2003, The ion transporter superfamily, Biochim. Biophys. Acta, 1618, 79, 10.1016/j.bbamem.2003.10.010
Rosen, 2002, Biochemistry of arsenic detoxification, FEBS Lett., 529, 86, 10.1016/S0014-5793(02)03186-1
Severi, 2005, Sialic acid transport in Haemophilus influenzae is essential for lipopolysaccharide sialylation and serum resistance and is dependent on a novel tripartite ATP-independent periplasmic transporter, Mol. Microbiol., 58, 1173, 10.1111/j.1365-2958.2005.04901.x
Allen, 2005, Novel sialic acid transporter of Haemophilus influenzae, Infect. Immun., 73, 5291, 10.1128/IAI.73.9.5291-5300.2005
Grammann, 2002, New type of osmoregulated solute transporter identified in halophilic members of the bacteria domain: TRAP transporter TeaABC mediates uptake of ectoine and hydroxyectoine in Halomonas elongata DSM 2581(T), J. Bacteriol., 184, 3078, 10.1128/JB.184.11.3078-3085.2002
Tetsch, 2002, The substrate-binding protein TeaA of the osmoregulated ectoine transporter TeaABC from Halomonas elongata: purification and characterization of recombinant TeaA, FEMS Microbiol. Lett., 211, 213, 10.1111/j.1574-6968.2002.tb11227.x
Lecher, 2009, The crystal structure of UehA in complex with ectoine-A comparison with other TRAP-T binding proteins, J. Mol. Biol., 389, 58, 10.1016/j.jmb.2009.03.077
Mulligan, 2009, The substrate-binding protein imposes directionality on an electrochemical sodium gradient-driven TRAP transporter, Proc. Natl. Acad. Sci. U. S. A., 106, 1778, 10.1073/pnas.0809979106
Thomas, 2006, Novel ligands for the extracellular solute receptors of two bacterial TRAP transporters, Microbiology, 152, 187, 10.1099/mic.0.28334-0
Sweet, 1979, Purification and properties of a citrate-binding transport component, the C protein of Salmonella typhimurium, Can. J. Biochem., 57, 710, 10.1139/o79-089
Kay, 1978, Citrate transport in Salmonella typhimurium, Arch. Biochem. Biophys., 190, 270, 10.1016/0003-9861(78)90276-X
Antoine, 2003, Overrepresentation of a gene family encoding extracytoplasmic solute receptors in Bordetella, J. Bacteriol., 185, 1470, 10.1128/JB.185.4.1470-1474.2003
Brocker, 2009, Citrate utilization by Corynebacterium glutamicum is controlled by the CitAB two-component system through positive regulation of the citrate transport genes citH and tctCBA, J. Bacteriol., 191, 3869, 10.1128/JB.00113-09
Fukami-Kobayashi, 1999, Domain dislocation: a change of core structure in periplasmic binding proteins in their evolutionary history, J. Mol. Biol., 286, 279, 10.1006/jmbi.1998.2454
Lee, 1999, Treponema pallidum TroA is a periplasmic zinc-binding protein with a helical backbone, Nat. Struct. Biol., 6, 628, 10.1038/10677
Wilkinson, 2003, Crystal structures of periplasmic solute-binding proteins in ABC transport complexes illuminate their function, 187
Cuneo, 2008, Structural analysis of a periplasmic binding protein in the tripartite ATP-independent transporter family reveals a tetrameric assembly that may have a role in ligand transport, J. Biol. Chem., 283, 32812, 10.1074/jbc.M803595200
Muller, 2006, Conservation of structure and mechanism in primary and secondary transporters exemplified by SiaP, a sialic acid binding virulence factor from Haemophilus influenzae, J. Biol. Chem., 281, 22212, 10.1074/jbc.M603463200
Berntsson, 2010, A structural classification of substrate-binding proteins, FEBS Lett., 584, 2606, 10.1016/j.febslet.2010.04.043
Gonin, 2007, Crystal structures of an extracytoplasmic solute receptor from a TRAP transporter in its open and closed forms reveal a helix-swapped dimer requiring a cation for alpha-keto acid binding, BMC Struct. Biol., 7, 11, 10.1186/1472-6807-7-11
Johnston, 2008, Characterization of the N-acetyl-5-neuraminic acid-binding site of the extracytoplasmic solute receptor (SiaP) of nontypeable Haemophilus influenzae strain 2019, J. Biol. Chem., 283, 855, 10.1074/jbc.M706603200
Akiyama, 2009, Crystal structure of a periplasmic substrate-binding protein in complex with calcium lactate, J. Mol. Biol., 392, 559, 10.1016/j.jmb.2009.07.043
Shi, 2009, Trapping open and closed forms of FitE: a group III periplasmic binding protein, Proteins, 75, 598, 10.1002/prot.22272
Hvorup, 2007, Asymmetry in the structure of the ABC transporter-binding protein complex BtuCD-BtuF, Science, 317, 1387, 10.1126/science.1145950
Takahashi, 2004, Structure of the Thermus thermophilus putative periplasmic glutamate/glutamine-binding protein, Acta Crystallogr. D. Biol. Crystallogr., 60, 1846, 10.1107/S0907444904019420
Bakermans, 2009, Development and use of genetic system to identify genes required for efficient low-temperature growth of Psychrobacter arcticus 273–4, Extremophiles, 13, 21, 10.1007/s00792-008-0193-3
Herrou, 2007, Structure-based mechanism of ligand binding for periplasmic solute-binding protein of the Bug family, J. Mol. Biol., 373, 954, 10.1016/j.jmb.2007.08.006
Huvent, 2006, Crystal structure of Bordetella pertussis BugD solute receptor unveils the basis of ligand binding in a new family of periplasmic binding proteins, J. Mol. Biol., 356, 1014, 10.1016/j.jmb.2005.11.096
Huvent, 2006, Structural analysis of Bordetella pertussis BugE solute receptor in a bound conformation, Acta Crystallogr. D Biol. Crystallogr., 62, 1375, 10.1107/S0907444906032653
Rucktooa, 2007, Crystal structures of two Bordetella pertussis periplasmic receptors contribute to defining a novel pyroglutamic acid binding DctP subfamily, J. Mol. Biol., 370, 93, 10.1016/j.jmb.2007.04.047
Kuhlmann, 2008, 1.55 A structure of the ectoine binding protein TeaA of the osmoregulated TRAP-transporter TeaABC from Halomonas elongata, Biochemistry, 47, 9475, 10.1021/bi8006719
Takahashi, 2004, Structure and implications for the thermal stability of phosphopantetheine adenylyltransferase from Thermus thermophilus, Acta Crystallogr. D Biol. Crystallogr., 60, 97, 10.1107/S0907444903025319