Caspase signaling, a conserved inductive cue for metazoan cell differentiation
Tài liệu tham khảo
Thornberry, 1997, A combinatorial approach defines specificities of members of the caspase family and granzyme B. functional relationships established for key mediators of apoptosis, J. Biol. Chem., 272, 17907, 10.1074/jbc.272.29.17907
Stennicke, 2000, Internally quenched fluorescent peptide substrates disclose the subsite preferences of human caspases 1, 3, 6, 7 and 8, Biochem. J., 350, 563, 10.1042/bj3500563
Yuan, 1993, The C. elegans cell death gene ced-3 encodes a protein similar to mammalian interleukin-1 beta-converting enzyme, Cell, 75, 641, 10.1016/0092-8674(93)90485-9
Lamkanfi, 2002, Alice in caspase land. A phylogenetic analysis of caspases from worm to man, Cell Death Differ., 9, 358, 10.1038/sj.cdd.4400989
Thornberry, 1998, Caspases: enemies within, Science, 281, 1312, 10.1126/science.281.5381.1312
Fernando, 2006, Is caspase-dependent apoptosis only cell differentiation taken to the extreme?, FASEB J., 21, 8, 10.1096/fj.06-5912hyp
Bell, 2017, Evolution of caspase-mediated cell death and differentiation: twins separated at birth, Cell Death Differ., 24, 1359, 10.1038/cdd.2017.37
Ishizaki, 1998, A role for caspases in lens fiber differentiation, J. Cell Biol., 140, 153, 10.1083/jcb.140.1.153
Weil, 1999, Caspase activation in the terminal differentiation of human epidermal keratinocytes, Curr. Biol., 9, 361, 10.1016/S0960-9822(99)80162-6
Zermati, 2001, Caspase activation is required for terminal erythroid differentiation, J. Exp. Med., 193, 247, 10.1084/jem.193.2.247
Fernando, 2002, Caspase 3 activity is required for skeletal muscle differentiation, Proc. Natl. Acad. Sci. U. S. A., 99, 11025, 10.1073/pnas.162172899
Sordet, 2002, Specific involvement of caspases in the differentiation of monocytes into macrophages, Blood, 100, 4446, 10.1182/blood-2002-06-1778
Arama, 2003, Caspase activity and a specific cytochrome C are required for sperm differentiation in Drosophila, Dev. Cell, 4, 687, 10.1016/S1534-5807(03)00120-5
Naito, 1997, Phosphatidylserine externalization is a downstream event of interleukin-1 beta-converting enzyme family protease activation during apoptosis, Blood, 89, 2060, 10.1182/blood.V89.6.2060
van den Eijnde, 2001, Transient expression of phosphatidylserine at cell–cell contact areas is required for myotube formation, J. Cell Sci., 114, 3631, 10.1242/jcs.114.20.3631
Murray, 2008, A non-apoptotic role for caspase-9 in muscle differentiation, J. Cell Sci., 121, 3786, 10.1242/jcs.024547
Hochreiter-Hufford, 2013, Phosphatidylserine receptor BAI1 and apoptotic cells as new promoters of myoblast fusion, Nature, 497, 263, 10.1038/nature12135
Gauster, 2010, Caspases rather than calpains mediate remodelling of the fodrin skeleton during human placental trophoblast fusion, Cell Death Differ., 17, 336, 10.1038/cdd.2009.133
Arama, 2003, Caspase activity and a specific cytochrome C are required for sperm differentiation in Drosophila, Dev. Cell, 4, 687, 10.1016/S1534-5807(03)00120-5
Aram, 2016, A krebs cycle component limits caspase activation rate through mitochondrial surface restriction of CRL activation, Dev. Cell, 37, 15, 10.1016/j.devcel.2016.02.025
Kanuka, 2005, Drosophila caspase transduces Shaggy/GSK-3beta kinase activity in neural precursor development, EMBO J., 24, 3793, 10.1038/sj.emboj.7600822
Fernando, 2005, Neural stem cell differentiation is dependent upon endogenous caspase 3 activity, FASEB J., 19, 1671, 10.1096/fj.04-2981fje
Unsain, 2015, New views on the misconstrued: executioner caspases and their diverse non-apoptotic roles, Neuron, 88, 461, 10.1016/j.neuron.2015.08.029
Williams, 2006, Local caspase activity directs engulfment of dendrites during pruning, Nat. Neurosci., 9, 1234, 10.1038/nn1774
Unsain, 2013, XIAP regulates caspase activity in degenerating axons, Cell Rep., 4, 751, 10.1016/j.celrep.2013.07.015
Wang, 2014, Caspase-3 cleavage of dishevelled induces elimination of postsynaptic structures, Dev. Cell, 28, 670, 10.1016/j.devcel.2014.02.009
Okuyama, 2004, High commitment of embryonic keratinocytes to terminal differentiation through a Notch1-caspase 3 regulatory mechanism, Dev. Cell, 6, 551, 10.1016/S1534-5807(04)00098-X
Weber, 2005, The canonical intrinsic mitochondrial death pathway has a non-apoptotic role in signaling lens cell differentiation, J. Biol. Chem., 280, 22135, 10.1074/jbc.M414270200
Zhao, 2016, Nuclear condensation during mouse erythropoiesis requires caspase-3-mediated nuclear opening, Dev. Cell, 36, 498, 10.1016/j.devcel.2016.02.001
Larsen, 2010, Parole terms for a killer: directing caspase3/CAD induced DNA strand breaks to coordinate changes in gene expression, ABBV Cell Cycle, 9, 2940
Larsen, 2017, The caspase-activated DNase: apoptosis and beyond, FEBS J., 284, 1160, 10.1111/febs.13970
Nagata, 1998, A caspase-activated DNase that degrades DNA during apoptosis, and its inhibitor ICAD, Nature, 391, 43, 10.1038/34112
Farzaneh, 1982, DNA strand breaks and ADP-ribosyl transferase activation during cell differentiation, Nature, 300, 362, 10.1038/300362a0
Iseki, 1986, DNA strand breaks in rat tissues as detected by in situ nick translation, Exp. Cell Res., 167, 311, 10.1016/0014-4827(86)90172-2
Coulton, 1992, In situ localisation of single-stranded DNA breaks in nuclei of a subpopulation of cells within regenerating skeletal muscle of the dystrophic mdx mouse, J. Cell Sci., 102, 653, 10.1242/jcs.102.3.653
Inomata, 2009, Genotoxic stress abrogates renewal of melanocyte stem cells by triggering their differentiation, Cell, 137, 1088, 10.1016/j.cell.2009.03.037
Milyavsky, 2010, A distinctive DNA damage response in human hematopoietic stem cells reveals an apoptosis-independent role for p53 in self-renewal, Cell Stem Cell, 7, 186, 10.1016/j.stem.2010.05.016
Khan, 2017, The initiator caspase Dronc plays a non-apoptotic role in promoting DNA damage signalling in D. melanogaster, J. Cell Sci., 130, 2984, 10.1242/jcs.200782
Onishi, 2017, Genome stability by DNA polymerase β in neural progenitors contributes to neuronal differentiation in cortical development, J. Neurosci., 37, 8444, 10.1523/JNEUROSCI.0665-17.2017
Dick, 2013, Cell death proteins: an evolutionary role in cellular adaptation before the advent of apoptosis, Bioessays, 35, 974, 10.1002/bies.201300052
Al-Khalaf, 2016, Temporal activation of XRCC1-mediated DNA repair is essential for muscle differentiation, Cell Discov., 2, 15041, 10.1038/celldisc.2015.41
Larsen, 2010, Caspase 3/caspase-activated DNase promote cell differentiation by inducing DNA strand breaks, Proc. Natl. Acad. Sci., 107, 4230, 10.1073/pnas.0913089107
Ju, 2006, A topoisomerase IIbeta-mediated dsDNA break required for regulated transcription, Science, 312, 1798, 10.1126/science.1127196
Puc, 2017, Physiological functions of programmed DNA breaks in signal-induced transcription, Nat. Rev. Mol. Cell Biol., 18, 471, 10.1038/nrm.2017.43
Molenaar, 2012, Sequencing of neuroblastoma identifies chromothripsis and defects in neuritogenesis genes, Nature, 483, 589, 10.1038/nature10910
Rausch, 2012, Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations, Cell, 148, 59, 10.1016/j.cell.2011.12.013
Notta, 2016, A renewed model of pancreatic cancer evolution based on genomic rearrangement patterns, Nature, 538, 378, 10.1038/nature19823
Stephens, 2011, Massive genomic rearrangement acquired in a single catastrophic event during cancer development, Cell, 144, 27, 10.1016/j.cell.2010.11.055
Liu, 2017, Self-inflicted DNA double-strand breaks sustain tumorigenicity and stemness of cancer cells, Cell Res., 27, 764, 10.1038/cr.2017.41
Crose, 2014, Alveolar rhabdomyosarcoma-associated PAX3-FOXO1 promotes tumorigenesis via Hippo pathway suppression, J. Clin. Invest., 124, 285, 10.1172/JCI67087
López-Otín, 2002, Protease degradomics: a new challenge for proteomics, Nat. Rev. Mol. Cell Biol., 3, 509, 10.1038/nrm858
Ribeil, 2007, Hsp70 regulates erythropoiesis by preventing caspase-3-mediated cleavage of GATA-1, Nature, 445, 102, 10.1038/nature05378
Cathelin, 2006, Identification of proteins cleaved downstream of caspase activation in monocytes undergoing macrophage differentiation, J. Biol. Chem., 281, 17779, 10.1074/jbc.M600537200
Rano, 1997, A combinatorial approach for determining protease specificities: application to interleukin-1beta converting enzyme (ICE), Chem. Biol., 4, 149, 10.1016/S1074-5521(97)90258-1
Talanian, 1997, Substrate specificities of caspase family proteases, J. Biol. Chem., 272, 9677, 10.1074/jbc.272.15.9677
Schechter, 2012, Reprint of on the size of the active site in proteases. I. Papain, Biochem. Biophys. Res. Commun., 425, 497, 10.1016/j.bbrc.2012.08.015
O’Donoghue, 2012, Global identification of peptidase specificity by multiplex substrate profiling, Nat. Methods, 9, 1095, 10.1038/nmeth.2182
Julien, 2016, Quantitative MS-based enzymology of caspases reveals distinct protein substrate specificities, hierarchies, and cellular roles, Proc. Natl. Acad. Sci. U. S. A., 113, E2001, 10.1073/pnas.1524900113
Tucker, 2016, Phage display and structural studies reveal plasticity in substrate specificity of caspase-3a from zebrafish, Protein Sci., 25, 2076, 10.1002/pro.3032
Lien, 2004, A substrate-phage approach for investigating caspase specificity, Protein J., 23, 413, 10.1023/B:JOPC.0000039555.92058.51
Julien, 2017, Caspases and their substrates, Cell Death Differ., 24, 1380, 10.1038/cdd.2017.44
Abdul-Ghani, 2011, Wnt11 promotes cardiomyocyte development by caspase-mediated suppression of canonical Wnt signals, Mol. Cell. Biol., 31, 163, 10.1128/MCB.01539-09
Pop, 2006, The apoptosome activates caspase-9 by dimerization, Mol. Cell, 22, 269, 10.1016/j.molcel.2006.03.009
Duncan, 2011, A peptide-Based target screen implicates the protein kinase CK2 in the global regulation of caspase signaling, Sci. Signal., 4, 10.1126/scisignal.2001682
Dick, 2015, Caspase 3 cleavage of Pax7 inhibits self-renewal of satellite cells, Proc. Natl. Acad. Sci. U. S. A., 112, E5246, 10.1073/pnas.1512869112
Tan, 2006, SAG/ROC-SCFβ-TrCP E3 ubiquitin ligase promotes pro-Caspase-3 degradation as a mechanism of apoptosis protection, Neoplasia, 8, 1042, 10.1593/neo.06568
Kuo, 2006, Identification of E2/E3 ubiquitinating enzymes and caspase activity regulating Drosophila sensory neuron dendrite pruning, Neuron, 51, 283, 10.1016/j.neuron.2006.07.014
Mannick, 1999, Fas-induced caspase denitrosylation, Science, 284, 651, 10.1126/science.284.5414.651
Pan, 2007, Glutathiolation regulates tumor necrosis factor-alpha-induced caspase-3 cleavage and apoptosis: key role for glutaredoxin in the death pathway, Circ. Res., 100, 213, 10.1161/01.RES.0000256089.30318.20
Canton, 2006, The shape of things to come: an emerging role for protein kinase CK2 in the regulation of cell morphology and the cytoskeleton, Cell Signal., 18, 267, 10.1016/j.cellsig.2005.07.008
Meggio, 2003, One-thousand-and-one substrates of protein kinase CK2?, FASEB J., 17, 349, 10.1096/fj.02-0473rev
Abdul-Ghani, 2017, Cardiotrophin 1 stimulates beneficial myogenic and vascular remodeling of the heart [Internet], Cell Res., 10.1038/cr.2017.87
Putinski, 2013, Intrinsic-mediated caspase activation is essential for cardiomyocyte hypertrophy, Proc. Natl. Acad. Sci., 110, E4079, 10.1073/pnas.1315587110
PÖRN-ARES, 2003, Oxidized low-density lipoprotein induces calpain-dependent cell death and ubiquitination of caspase 3 in HMEC-1 endothelial cells, Biochem. J., 374, 403, 10.1042/bj20021955
Chen, 2003, Preservation of caspase-3 subunits from degradation contributes to apoptosis evoked by lactacystin: any single lysine or lysine pair of the small subunit is sufficient for ubiquitination, Mol. Pharmacol., 64, 334, 10.1124/mol.64.2.334
Suzuki, 2001, Ubiquitin-protein ligase activity of X-linked inhibitor of apoptosis protein promotes proteasomal degradation of caspase-3 and enhances its anti-apoptotic effect in Fas-induced cell death, Proc. Natl. Acad. Sci. U. S. A., 98, 8662, 10.1073/pnas.161506698
Huang, 2000, The inhibitor of apoptosis, cIAP2, functions as a ubiquitin-protein ligase and promotes in vitro monoubiquitination of caspases 3 and 7, J. Biol. Chem., 275, 26661, 10.1016/S0021-9258(19)61427-4
Kaplan, 2010, Gradients of a ubiquitin E3 ligase inhibitor and a caspase inhibitor determine differentiation or death in spermatids, Dev. Cell, 19, 160, 10.1016/j.devcel.2010.06.009
Jiang, 2009, S–nitrosylation of caspase-3 is the mechanism by which adhesion fibroblasts manifest lower apoptosis, Wound Repair Regen., 17, 224, 10.1111/j.1524-475X.2009.00459.x
MAEJIMA, 2005, Nitric oxide inhibits myocardial apoptosis by preventing caspase-3 activity via S-nitrosylation, J. Mol. Cell. Cardiol., 38, 163, 10.1016/j.yjmcc.2004.10.012
Kennedy, 2014, Regulation of apoptosis by heat shock proteins, IUBMB Life, 66, 327, 10.1002/iub.1274
Arya, 2007, Heat shock genes – integrating cell survival and death, J. Biosci., 32, 595, 10.1007/s12038-007-0059-3
Lanneau, 2008, Heat shock proteins: essential proteins for apoptosis regulation, J. Cell. Mol. Med., 12, 743, 10.1111/j.1582-4934.2008.00273.x
Arlet, 2014, HSP70 sequestration by free α-globin promotes ineffective erythropoiesis in β-thalassaemia, Nature, 514, 242, 10.1038/nature13614
Deveraux, 1999, IAP family proteins–suppressors of apoptosis, Genes Dev., 13, 239, 10.1101/gad.13.3.239
Salvesen, 2002, IAP proteins: blocking the road to death’s door, Nat. Rev. Mol. Cell Biol., 3, 401, 10.1038/nrm830
Riedl, 2004, Molecular mechanisms of caspase regulation during apoptosis, Nat. Rev. Mol. Cell Biol., 5, 897, 10.1038/nrm1496
Shi, 2002, Mechanisms of caspase activation and inhibition during apoptosis, Mol. Cell, 9, 459, 10.1016/S1097-2765(02)00482-3
Arama, 2007, A ubiquitin ligase complex regulates caspase activation during sperm differentiation in Drosophila, PLoS Biol., 5
DeVorkin, 2014, The Drosophila effector caspase Dcp-1 regulates mitochondrial dynamics and autophagic flux via SesB, J. Cell Biol., 205, 477, 10.1083/jcb.201303144
Weaver, 2017, Coupled caspase and N-End rule ligase activities allow recognition and degradation of pluripotency factor LIN-28 during non-apoptotic development, Dev. Cell, 41, 665, 10.1016/j.devcel.2017.05.013
Choutka, 2017, Hsp83 loss suppresses proteasomal activity resulting in an upregulation of caspase-dependent compensatory autophagy, Autophagy, 13, 1573, 10.1080/15548627.2017.1339004
Lee, 2010, Metacaspase Yca1 is required for clearance of insoluble protein aggregates, Proc. Natl. Acad. Sci. U. S. A., 107, 13348, 10.1073/pnas.1006610107
Hill, 2014, Life-span extension by a metacaspase in the yeast Saccharomyces cerevisiae, Science, 344, 1389, 10.1126/science.1252634
Minina, 2017, Metacaspases versus caspases in development and cell fate regulation, Cell Death Differ., 24, 1314, 10.1038/cdd.2017.18
Shimizu, 2013, Nek5, a novel substrate for caspase-3, promotes skeletal muscle differentiation by up-regulating caspase activity, FEBS Lett., 587, 2219, 10.1016/j.febslet.2013.05.049
Gabet, 2011, Caspase-activated ROCK-1 allows erythroblast terminal maturation independently of cytokine-induced Rho signaling, Cell Death Differ., 18, 678, 10.1038/cdd.2010.140
Dassé, 2007, Tissue inhibitor of metalloproteinase-1 promotes hematopoietic differentiation via caspase-3 upstream the MEKK1/MEK6/p38alpha pathway, Leukemia, 21, 595, 10.1038/sj.leu.2404540
Fujita, 2008, Caspase activity mediates the differentiation of embryonic stem cells, Cell Stem Cell, 2, 595, 10.1016/j.stem.2008.04.001
Ye, 2013, A pathway involving HDAC5, cFLIP and caspases regulates expression of the splicing regulator polypyrimidine tract binding protein in the heart, J. Cell Sci., 126, 1682, 10.1242/jcs.121384
Ohsawa, 2010, Maturation of the olfactory sensory neurons by Apaf-1/caspase-9-mediated caspase activity, Proc. Natl. Acad. Sci., 107, 13366, 10.1073/pnas.0910488107