Carbon: Nitrogen (C:N) ratio level variation influences microbial community of the system and growth as well as immunity of shrimp (Litopenaeus vannamei) in biofloc based culture system

Martinez-Cordova, 2017, From microbes to fish the next revolution in food production, Crit. Rev. Biotechnol., 37, 287, 10.3109/07388551.2016.1144043

Wang, 2016, Effects of different carbon sources addition on nutrition composition and extracellular enzymes activity of bioflocs, and digestive enzymes activity and growth performance of Litopenaeus vannamei in zero-exchange culture tanks, Aquacult. Res., 47, 3307, 10.1111/are.12784

Aguilera-Rivera, 2014, Probiotic effect of floc on Vibrios in the Pacific white shrimp Litopenaeus vannamei, Aquaculture, 424, 215, 10.1016/j.aquaculture.2014.01.008

Avnimelech, 2012

Avnimelech, 2009

Sinha, 2012, The interactive effects of ammonia exposure, nutritional status and exercise on metabolic and physiological responses in gold fish (Carassius auratus L.), Aquat. Toxicol., 109, 33, 10.1016/j.aquatox.2011.11.002

Xu, 2015, Effects of C/N ratio on biofloc development, water quality, and performance of Litopenaeus vannamei juveniles in a biofloc based, high-density, zero-exchange, outdoor tank system, Aquaculture, 453, 169, 10.1016/j.aquaculture.2015.11.021

Zhao, 2012, The application of bioflocs technology in high-intensive, zero exchange farming systems of Marsupenaeus japonicas, Aquaculture, 354, 97, 10.1016/j.aquaculture.2012.03.034

Crab, 2010, The effect of different carbon sources on the nutritional value of bioflocs, a feed for Macrobrachium rosenbergii post larvae, Aquacult. Res., 41, 559, 10.1111/j.1365-2109.2009.02353.x

Ekasari, 2014, Immune response and disease resistance of shrimp fed biofloc grown on different carbon sources, Fish Shellfish Immunol., 41, 332, 10.1016/j.fsi.2014.09.004

Ekasari, 2010, Primary nutritional content of bio-flocs cultured with different organic carbon sources and salinity, HAYATI J. Biosci, 17, 125, 10.4308/hjb.17.3.125

Hargreaves, 2013

Haslun, 2012, Characterization of bioflocs in a no water exchange super-intensive system for the production of food size pacific white shrimp Litopenaeus vannamei, Int. J. Aquacult., 2, 29

Wasielesky, 2013, Nursery of Litopenaeus vannamei reared in a biofloc system: the effect of stocking densities and compensatory growth, J. Shellfish Res., 32, 799, 10.2983/035.032.0323

Avnimelech, 2007, Feeding with microbial flocs by tilapia in minimal discharge bioflocs technology ponds, Aquaculture, 264, 140, 10.1016/j.aquaculture.2006.11.025

Xu, 2013, Enhancement of immune response and antioxidant status of Litopenaeus vannamei juvenile in bioflocs-based culture tanks manipulating high C/N ratio of feed input, Aquaculture, 412, 117, 10.1016/j.aquaculture.2013.07.017

Hari, 2004, Effects of carbohydrate addition on production in extensive shrimp culture systems, Aquaculture, 241, 179, 10.1016/j.aquaculture.2004.07.002

Ezemonye, 2009, Lethal toxicity of industrial detergent on bottom dwelling sentinels, Int. J. Sediment Res., 24, 479, 10.1016/S1001-6279(10)60019-4

Caruso, 2013, Microbes and their use as indicators of pollution, J. Pollut.Eff. Control, 1, 1

Martínez-Córdova, 2015, Microbial-based system for aquaculture of fish and shrimp: an update review, Rev. Aquacult., 7, 131, 10.1111/raq.12058

Martınez-Porchas, 2017, Microbial metagenomics in aquaculture: a potential tool for a deeper insight into the activity, Rev. Aquacult., 9, 42, 10.1111/raq.12102

Monchy, 2011, Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing, Environ. Microbiol., 13, 1433, 10.1111/j.1462-2920.2011.02444.x

Gilbert, 2012, Defining seasonal marine microbial community dynamics, ISME J., 6, 298, 10.1038/ismej.2011.107

Quince, 2013, The impact of Crohn's disease genes on healthy human gut microbiota: a pilot study, Gut, 62, 952, 10.1136/gutjnl-2012-304214

Avnimelech, 1999, Carbon/nitrogen ratio as a control element in aquaculture systems, Aquaculture, 176, 227, 10.1016/S0044-8486(99)00085-X

2005

1998

Livak, 2001, vol. 25, 402

Crab, 2007, Nitrogen removal techniques in aquaculture for a sustainable production, Aquaculture, 270, 1, 10.1016/j.aquaculture.2007.05.006

Charles, 2010, 102

Avnimelech, 2006, Bio-filters: the need for an new comprehensive approach, Aquacult. Eng., 34, 172, 10.1016/j.aquaeng.2005.04.001

Ebeling, 2006, Performance evaluation of the hydrotech belt filter using coagulation/flocculation aids (alum/polymers) for the removal of suspended solids and phosphorus from intensive aquaculture micro screen backwash effluent, Aquacult. Eng., 35, 61, 10.1016/j.aquaeng.2005.08.006

Cardona, 2016, Bacterial community characterization of water and intestine of the shrimp Litopenaeus stylirostris in a biofloc system, BMC Microbiol., 16, 157, 10.1186/s12866-016-0770-z

Sung, 2001, Relationships between disease outbreak in cultured tiger shrimp (Penaeus monodon) and the composition of Vibrio communities in pond water and shrimp hepatopancreas during cultivation, Aquaculture, 192, 101, 10.1016/S0044-8486(00)00458-0

Lightner, 2005, Biosecurity in shrimp farming: pathogen exclusion through use of SPF stock and routine surveillance, J. World Aquacult. Soc., 36, 229, 10.1111/j.1749-7345.2005.tb00328.x

Moriarty, 1998, Control of luminous Vibrio species in penaeid aquaculture ponds, Aquaculture, 164, 351, 10.1016/S0044-8486(98)00199-9

Mohney, 1994, An epizootic of vibriosis in ecuadorian pond-reared Penaeus vannamei boone (Crustacea: Decapoda), J. World Aquacult. Soc., 25, 116, 10.1111/j.1749-7345.1994.tb00811.x

Immanuel, 2004, Effect of butanolic extracts from terrestrial herbs and seaweeds on the survival, growth and pathogen (Vibrio parahaemolyticus) load on shrimp Penaeus indicus juveniles, Aquaculture, 236, 53, 10.1016/j.aquaculture.2003.11.033

Balcázar, 2003

Panigrahi, 2017, Biofloc based nutrient dense culture system for nursery and grow-out farming of Pacific white shrimp Penaeus vannamei Boone, 1931, Indian J. Fish., 64, 22, 10.21077/ijf.2017.64.special-issue.76189-04

Kim, 2015, Growth performance and immunological and antioxidant status of Chinese shrimp, Fennerpenaeus Chinensis reared in bio-floc culture system using probiotics, Fish Shellfish Immunol., 47, 141, 10.1016/j.fsi.2015.08.027

Anand, 2013, Effects of C: N ratio and substrate integration on periphyton biomass, microbial dynamics, and growth of Penaeus monodon juveniles, Aquacult. Int., 21, 511, 10.1007/s10499-012-9585-6

Amparyup, 2013, Prophenoloxidase system and its role in shrimp immune responses against major pathogens, Fish Shellfish Immunol., 34, 990, 10.1016/j.fsi.2012.08.019

Van de Braak, 2002, The roles of haemocytes and the lymphoid organ in the clearance of injected Vibrio bacteria in Penaeus monodon shrimp, Fish Shellfish Immunol., 13, 293, 10.1006/fsim.2002.0409

Johansson, 1985, Exocytosis of the prophenoloxidase activating system from crayfish haemocytes, J. Comp. Physiol., 156, 175, 10.1007/BF00695771

Rao, 2010, The role of lysozyme in the prophenoloxidase activation system of Manduca sexta: an in vitro approach, Dev. Comp. Immunol., 34, 264, 10.1016/j.dci.2009.10.004

Dawood, 2017, Dietary supplementation of β-glucan improves growth performance, the innate immune response and stress resistance of red sea bream, Pagrus majo, Aquacult. Nutr., 23, 148, 10.1111/anu.12376

Heijtz, 2011, Normal gut microbiota modulates brain development and behavior, Proc. Natl. Acad. Sci. Unit. States Am., 108, 3047, 10.1073/pnas.1010529108

Maslowski, 2011, Diet, gut microbiota and immune responses, Nat. Immunol., 12, 5, 10.1038/ni0111-5

Ferreira, 2015, Microbial biofloc as source of probiotic bacteria for the culture of Litopenaeus vannamei, Aquaculture, 448, 273, 10.1016/j.aquaculture.2015.06.006

Jiravanichpaisal, 2006, Cell-mediated immunity in arthropods: hematopoiesis, coagulation, melanization and opsonization, Immunobiology, 211, 213, 10.1016/j.imbio.2005.10.015

Ringø, 2010, Prebiotics in aquaculture: a review, Aquacult. Nutr., 16, 117, 10.1111/j.1365-2095.2009.00731.x

Panigrahi, 2007, Microbial intervention for better fish health in aquaculture: the Indian scenario, Fish Physiol. Biochem., 33, 429, 10.1007/s10695-007-9160-7

Harikrishnan, 2011, Immunomodulatory effect of probiotics enriched diets on Uronema marinum infected olive flounder, Fish Shellfish Immunol., 30, 964971, 10.1016/j.fsi.2011.01.030

Giri, 2015, Effect of cellular products of potential probiotic bacteria on the immune response of Labeo rohita and susceptibility to Aeromonas hydrophila infection, Fish Shellfish Immunol., 46, 716, 10.1016/j.fsi.2015.08.012

Kim, 2014, Effect of bioflocs on growth and immune activity of Pacific white shrimp, Litopenaeus vannamei postlarvae, Aquacult. Res., 45, 362, 10.1111/are.12319

NACA, 2012, Report of the Asia Pacific emergency regional consultation on the emerging shrimp disease: early mortality syndrome (EMS)/acute hepatopancreatic necrosis syndrome (AHPNS)

Tran, 2013, Determination of the infectious nature of the agent of acute hepatopancreatic necrosis syndrome affecting penaeid shrimp, Dis. Aquat. Org., 105, 45, 10.3354/dao02621

Han, 2007, Characterization of a Ras-related nuclear protein (Ran protein) up-regulated in shrimp antiviral immunity, Fish Shellfish Immunol., 23, 937, 10.1016/j.fsi.2007.01.022

Qiao, 2015, Comparison of immune response of Pacific white shrimp, Litopenaeus vannamei, after multiple and single infections with WSSV and Vibrio anguillarum, Fish Shellfish Immunol., 44, 257, 10.1016/j.fsi.2015.02.009

Wu, 2011, Two novel ficolin-like proteins act as pattern recognition receptors for invading pathogens in the freshwater crayfish Pacifastacus leniusculus, Proteomics, 11, 2249, 10.1002/pmic.201000728

He, 2004, Identification of genes involved in the response of haemocytes of Penaeus japonicus by suppression subtractive hybridization (SSH) following microbial challenge, Fish Shellfish Immunol., 17, 121, 10.1016/j.fsi.2003.11.008

Pan, 2005, Identification of four novel exon 5 splice variants of the mouse μ-opioid receptor gene: functional consequences of C-terminal splicing, Mol. Pharmacol., 68, 866, 10.1124/mol.105.011858

Jang, 2011, Selectively enhanced expression of prophenoloxidase activating enzyme 1 (PPAE1) at a bacteria clearance site in the white shrimp, Litopenaeus vannamei. BMC Immunol, 12, 70, 10.1186/1471-2172-12-70

Lee, 2002, Early events in crustacean innate immunity, Fish Shellfish Immunol., 12, 421, 10.1006/fsim.2002.0420

Cerenius, 2004, The prophenoloxidase-activating system in invertebrates, Immunol. Rev., 198, 116, 10.1111/j.0105-2896.2004.00116.x

Söderhäll, 1998, Role of the prophenoloxidase-activating system in invertebrate immunity, Curr.t Opin. Immunol, 10, 23, 10.1016/S0952-7915(98)80026-5

Kwon, 2000, A masquerade-like serine proteinase homologue is necessary for phenoloxidase activity in the coleopteran insect, Holotrichia diomphalia larvae, FEBS J., 267, 6188

Wang, 2001, Properties of the prophenoloxidase activating enzyme of the freshwater crayfish, Pacifastacus leniusculus, FEBS J., 268, 895

Lee, 2002, A zymogen form of masquerade like serine proteinase homologue is cleaved during prophenoloxidase activation by Ca2+ in coleopteran and Tenebrio Molitor larvae, FEBS J., 269, 4375

Francisco, 2000, Beta-glucan binding protein and its role in shrimp immune response, Aquacult, 191, 13, 10.1016/S0044-8486(00)00416-6

Amparyup, 2009, Two prophenoloxidases are important for the survival of Vibrio harveyi challenged shrimp Penaeus monodon, Dev. Comp. Immunol., 33, 247, 10.1016/j.dci.2008.09.003

Amparyup, 2008, Molecular cloning, genomic organization and recombinant expression of a crustin-like antimicrobial peptide from black tiger shrimp Penaeus monodon, Mol. Immunol., 45, 1085, 10.1016/j.molimm.2007.07.031