Candidate Genes for Age at Menarche Are Associated With Uterine Leiomyoma

Irina Ponomarenko, Evgeny Reshetnikov, Alexey Polonikov, I.N. Verzilina, Inna Sorokina1, Anna Yermachenko1, Volodymyr Dvornyk2, Mikhail Churnosov
1iPLESP - Institut Pierre Louis d'Epidémiologie et de Santé Publique (56, boulevard Vincent Auriol - CS 81393 - 75646 Paris Cedex 13 - France)
2Alfaisal University (Al Zahrawi Street, Al Maather, Al Takhassusi Rd, Riyadh 11533 - Saudi Arabia)

Tóm tắt

Age at menarche (AAM) is an important marker of the pubertal development and function of the hypothalamic–pituitary–ovarian system. It was reported as a possible factor for a risk of uterine leiomyoma (UL). However, while more than 350 loci for AAM have been determined by genome-wide association studies (GWASs) to date, no studies of these loci for their association with UL have been conducted so far. In this study, we analyzed 52 candidate loci for AAM for possible association with UL in a sample of 569 patients and 981 controls. The results of the study suggested that 23 out of the 52 studied polymorphisms had association with UL. Locus rs7759938 LIN28B was individually associated with the disease according to the dominant model. Twenty loci were associated with UL within 11 most significant models of intergenic interactions. Nine loci involved in 16 most significant models of interactions between single-nucleotide polymorphism (SNP), induced abortions, and chronic endometritis were associated with UL. Among the 23 loci associated with UL, 16 manifested association also with either AAM (7 SNPs) or height and/or body mass index (BMI) (13 SNPs). The above 23 SNPs and 514 SNPs linked to them have non-synonymous, regulatory, and expression quantitative trait locus (eQTL) significance for 35 genes, which play roles in the pathways related to development of the female reproductive organs and hormone-mediated signaling [false discovery rate (FDR) ≤ 0.05]. This is the first study reporting associations of candidate genes for AAM with UL.

Từ khóa


Tài liệu tham khảo

Aissani, 2015, Evaluation of GWAS candidate susceptibility loci for uterine leiomyoma in the multi-ethnic NIEHS uterine fibroid study., Front. Genet., 6, 10.3389/fgene.2015.00241

Barrett, 2005, Haploview: analysis and visualization of LD and haplotype maps., Bioinformatics, 21, 263, 10.1093/bioinformatics/bth457

Berndt, 2013, Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture., Nat. Genet., 5, 501, 10.1038/ng.2606

Bondagji, 2017, Replication of GWAS loci revealed the moderate effect of TNRC6B locus on susceptibility of saudi women to develop uterine leiomyomas., J. Obstet. Gynaecol. Res., 43, 330, 10.1111/jog.13217

Bradfield, 2011, A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci., PLoS Genet., 7, 10.1371/journal.pgen.1002293

Calle, 2010, Mbmdr: an R package for exploring gene-gene interactions associated with binary or quantitative traits., Bioinformatics, 17, 2198, 10.1093/bioinformatics/btq352

Calle, 2008, Improving strategies for detecting genetic patterns of disease susceptibility in association studies., Stat. Med., 27, 10.1002/sim.3431

Cardozo, 2012, The estimated annual cost of uterine leiomyomata in the United States., Am. J. Obstet. Gynecol., 206, 211.e1, 10.1016/j.ajog.2011.12.002

Carty, 2013, Replication of genetic loci for ages at menarche and menopause in the multi-ethnic population architecture using genomics and epidemiology (PAGE) study., Hum. Reprod., 6, 1695, 10.1093/humrep/det071

Cha, 2011, A genome-wide association study identifies three loci associated with susceptibility to uterine fibroids., Nat. Genet., 43, 447, 10.1038/ng.805

Che, 2014, An adaptive permutation approach for genome-wide association study: evaluation and recommendations for use., BioData. Min., 7, 10.1186/1756-0381-7-9

Chen, 2011, Practical and theoretical considerations in study design for detecting gene-gene interactions using MDR and GMDR approaches., PLoS One, 6, 10.1371/journal.pone.0016981

Chen, 2004, Functional analysis of genetic variation in catechol-o-methyltransferase (COMT): effects on mRNA, protein enzyme activity in postmortem human brain., Am. J. Hum. Genet., 2004, 807, 10.1086/425589

Commandeur, 2015, Epidemiological and genetic clues for molecular mechanisms involved in uterine leiomyoma development and growth., Hum. Reprod. Update, 21, 593, 10.1093/humupd/dmv030

Cousminer, 2013, Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity., Hum. Mol. Genet., 13, 2735, 10.1093/hmg/ddt104

Cousminer, 2014, Genome-wide association study of sexual maturation in males and females highlights a role for body mass and menarche loci in male puberty., Hum. Mol. Genet., 16, 4452, 10.1093/hmg/ddu150

David, 2007, Women’s reproductive health needs in Russia: what can we learn from an intervention to improvepost-abortion care?, Health Policy Plan., 22, 83, 10.1093/heapol/czm003

Day, 2017, Genomic analyses identify hundreds of variants associated with AAM and support a role for puberty timing in cancer risk., Nat. Genet., 49, 834, 10.1038/ng.3841

Delahanty, 2013, Evaluation of GWAS-identified genetic variants for age at menarche among Chinese women., Hum. Reprod., 4, 1135, 10.1093/humrep/det011

Douglas, 2014, Women’s reproductive health in the Sakha Republic (Yakutia)., Int. J. Circumpolar Health, 30, 10.3402/ijch.v73.25872

Edwards, 2013, BET1L and TNRC6B associate with uterine fibroid risk among European Americans., Hum. Genet., 132, 943, 10.1007/s00439-013-1306-1303

Eggert, 2012, Genome-wide linkage and association analyses implicate FASN in predisposition to uterine leiomyomata., Am. J. Hum. Genet., 91, 621, 10.1016/j.ajhg.2012.08.009

Elks, 2010, Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies., Nat. Genet., 12, 1077, 10.1038/ng.714

Feng, 2013, The associations between the Val158Met in the catechol-O-methyltransferase (COMT) gene and the risk of uterine leiomyoma (ULM)., Gene, 529, 296, 10.1016/j.gene.2013.07.019

Fernandez-Rhodes, 2013, Association of adiposity genetic variants with menarche timing in 92,105 women of European descent., Am. J. Epidemiol., 3, 451, 10.1093/aje/kws473

Gajbhiye, 2018, Complex genetics of female fertility., NPJ Genom. Med., 3, 10.1038/s41525-018-0068-1

Gallagher, 2019, Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis., Nat. Commun., 10, 10.1038/s41467-019-12536-4

Graff, 2013, Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course., Hum. Mol. Genet., 22, 3597, 10.1093/hmg/ddt205

Gudbjartsson, 2008, Many sequence variants affecting diversity of adult human height., Nat. Genet., 5, 609, 10.1038/ng.122

He, 2010, A large-scale candidate-gene association study of age at menarche and age at natural menopause., Hum. Genet., 5, 515, 10.1007/s00439-010-0878-4

He, 2009, Genome-wide association studies identify novel loci associated with age at menarche and age at natural menopause., Nat. Genet., 6, 724, 10.1038/ng.385

He, 2015, Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci., Hum. Mol. Genet., 6, 1791, 10.1093/hmg/ddu583

Hellwege, 2017, A multi-stage genome-wide association study of uterine fibroids in African Americans., Hum. Genet., 136, 1363, 10.1007/s00439-017-1836-1831

Lango Allen, 2010, Hundreds of variants clustered in genomic loci and biological pathways affect human height., Nature, 7317, 832, 10.1038/nature09410

Leinonen, 2012, Association of LIN28B with adult adiposity-related traits in females., PLoS One, 11, 10.1371/journal.pone.0048785

Lou, 2007, A generalized combinatorial approach for detecting gene by gene and gene by environment interactions with application to nicotine dependence., Am. J. Hum. Genet., 80, 1125, 10.1086/518312

Luoto, 2000, Heritability and risk factors of uterine fibroids-the Finnish Twin Cohort study., Maturitas, 37, 15, 10.1016/S0378-5122(00)00160-162

Mahachie, 2012, Lower-order effects adjustment in quantitative traits model-based multifactor dimensionality reduction., PLoS One, 7, 10.1371/journal.pone.0029594

McWilliams, 2017, Recent advances in uterine fibroid etiology., Semin. Reprod. Med., 35, 181, 10.1055/s-0037-1599090

Ong, 2009, Genetic variation in LIN28B is associated with the timing of puberty., Nat. Genet., 6, 729, 10.1038/ng.382

Ong, 2011, Associations between the pubertal timing-related variant in LIN28B and BMI vary across the life course., J. Clin. Endocrinol. Metab., 1, E125, 10.1210/jc.2010-0941

Perry, 2014, Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche., Nature, 7520, 92, 10.1038/nature13545

Perry, 2009, Meta-analysis of genome-wide association data identifies two loci influencing age at menarche., Nat. Genet., 6, 648, 10.1038/ng.386

Ponomarenko, 2018, Selection of polymorphic loci for association analysis in genetic-epidemiological studies., Res. Result Med. Pharm., 2, 40, 10.18413/2313-8955-2018-4-2-0-5

Ponomarenko, 2019, Association of genetic polymorphisms with age at menarche in Russian women., Gene, 686, 228, 10.1016/j.gene.2018.11.042

Purcell, 2007, PLINK: a tool set for wholegenome association and population-based linkage analyses., Am. J. Hum. Genet., 81, 559, 10.1086/519795

Rafnar, 2018, Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits., Nat. Commun., 9, 10.1038/s41467-018-05428-5426

Ruth, 2016, Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes., Eur. J. Hum. Genet., 24, 284, 10.1038/ejhg.2015.102

Samadi, 1996, Risk factors for self-reported uterine fibroids: a case-control study., Am. J. Public. Health, 86, 858, 10.2105/ajph.86.6.858

Sapkota, 2017, Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism., Nat. Comunn., 8, 10.1038/ncomms15539

Schneider, 2014, The breast cancer epidemic: 10 facts., Linacre Q., 81, 244, 10.1179/2050854914Y.0000000027

Sedgh, 2007, Legal abortion worldwide: incidence and recent trends., Perspect. Sex. Reprod. Health., 39, 216, 10.1363/3921607

Shen, 2017, The use of mifepristone in abortion associated with an increased risk of uterine leiomyomas., Medicine, 96, 10.1097/md.0000000000006680

Snieder, 1998, Genes control the cessation of a woman’s reproductive life: a twin study of hysterectomy and age at menopause., J. Clin. Endocrinol. Metab., 83, 1875, 10.1210/jc.83.6.1875

Song, 2017, Induced and spontaneous abortion and risk of uterine fibroids., J. Womens Health, 26, 76, 10.1089/jwh.2016.5913

Sorokina, 2018, Population genetic characteristics and genetic epidemiological research of candidate genes associations with multifactorial diseases., Res. Results Biomed., 4, 20, 10.18413/2313-8955-2018-4-4-0-3

Speliotes, 2010, Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index., Nat. Genet., 11, 937, 10.1038/ng.686

Stewart, 2017, Epidemiology of uterine fibroids: a systematic review., BJOG, 124, 1501, 10.1111/1471-0528.14640

Stolk, 2012, Meta-analyses identify 13 novel loci associated with age at menopause and highlights DNA repair and immune pathways., Nat. Genet., 44, 260, 10.1038/ng.1051

Sulem, 2009, Genome-wide association study identifies sequence variants on 6q21 associated with age at menarche., Nat. Genet., 6, 734, 10.1038/ng.383

Terry, 2010, Reproductive characteristics and risk of uterine leiomyomata., Fertil. Steril., 94, 2703, 10.1016/j.fertnstert.2010.04.065

Tian, 2016, Variants in FSHB are associated with polycystic ovary syndrome and luteinizing hormone level in Han Chinese women., J. Clin. Endocrinol. Metab., 101, 2178, 10.1210/jc.2015-3776

Tsialikas, 2015, LIN28: roles and regulation in development and beyond., Development, 14, 2397, 10.1242/dev.117580

Ulitsky, 2013, LincRNAs: genomics, evolution, and mechanisms., Cell, 1, 26, 10.1016/j.cell.2013.06.020

Välimäki, 2018, Genetic predisposition to uterine leiomyoma is determined by loci for genitourinary development and genome stability., eLife, 7, 10.7554/eLife.37110

Velez Edwards, 2013, Association of age at menarche with increasing number of fibroids in a cohort of women who underwent standardized ultrasound assessment., Am. J. Epidem., 178, 426, 10.1093/aje/kws585

Vikhlyaeva, 1995, Familial predisposition to uterine leiomyomas., Int. J. Gynaecol. Obstet., 51, 127, 10.1016/0020-7292(95)02533-I

Widén, 2010, Distinct variants at LIN28B influence growth in height from birth to adulthood., Am. J. Hum. Genet., 5, 773, 10.1016/j.ajhg.2010.03.010

Wise, 2016, Epidemiology of uterine fibroids - from menarche to menopause., Clin. Obstet. Gynecol., 59, 2, 10.1097/GRF.0000000000000164

Wise, 2004, Reproductive factors, hormonal contraception, and risk of uterine leiomyomata in African-American women: a prospective study., Am. J. Epidemiol., 159, 113, 10.1093/aje/kwh016

Wise, 2012, African ancestry and genetic risk for uterine leiomyomata., Am. J. Epidemiol., 176, 1159, 10.1093/aje/kws276

Wood, 2014, Defining the role of common variation in the genomic and biological architecture of adult human height., Nat. Genet., 11, 1173, 10.1038/ng.3097

Zhu, 2011, The Lin28/let-7 axis regulates glucose metabolism., Cell, 1, 81, 10.1016/j.cell.2011.08.033

Zimmermann, 2012, Prevalence, symptoms and management of uterine fibroids: an international internet-based survey of 21,746 women., BMC Womens Health, 12, 10.1186/1472-6874-12-16