Can network pharmacology identify the anti-virus and anti- inflammatory activities of Shuanghuanglian oral liquid used in Chinese medicine for respiratory tract infection?
Tài liệu tham khảo
Zhang, 2015, Comprehensive quantitative analysis of Shuang-Huang-Lian oral liquid using UHPLC–Q-TOF-MS and HPLC-ELSD, J. Pharm. Biomed. Anal., 102, 1, 10.1016/j.jpba.2014.08.025
N.P. Committee, 2015
Liang, 2017, Simultaneous determination of multiple classes of hydrophilic and lipophilic components in shuang-huang-Lian oral liquid formulations by UPLC-Triple quadrupole linear ion trap mass spectrometry, Molecules, 22, 2057, 10.3390/molecules22122057
Chen, 2014, Chinese patent medicines for the treatment of the common cold: a systematic review of randomized clinical trials, BMC Complement. Altern. Med., 14, 273, 10.1186/1472-6882-14-273
Zu, 2010, Evaluation of Chinese traditional patent medicines against influenza virus in vitro, Acta Pharm. Sin. B, 45, 408
Cheung, 2011, TCM: made in China, Nature, 480, S82, 10.1038/480S82a
Yao, 2013, Deciphering the combination principles of Traditional Chinese Medicine from a systems pharmacology perspective based on Ma-huang Decoction, J. Ethnopharmacol., 150, 619, 10.1016/j.jep.2013.09.018
Yu, 2018, Network pharmacology-based strategy to investigate pharmacological mechanisms of Zuojinwan for treatment of gastritis, BMC Complement. Altern. Med., 18, 1, 10.1186/s12906-018-2356-9
Kumar, 2016, Cancer/testis antigens as molecular drug targets using network pharmacology, Tumor Biol., 37, 15697, 10.1007/s13277-016-5333-2
Zhang, 2019, Network pharmacology databases for traditional Chinese medicine: review and assessment, Front. Pharmacol., 10, 123, 10.3389/fphar.2019.00123
Hopkins, 2008, Network pharmacology: the next paradigm in drug discovery, Nat. Chem. Biol., 4, 682, 10.1038/nchembio.118
Huang, 2019, Advances on network pharmacology in ethnomedicine research, China J. Chinese Matera Med., 44, 3187
Li, 2016, Exploring traditional chinese medicine by a novel therapeutic concept of network target, Chin. J. Integr. Med., 22, 647, 10.1007/s11655-016-2499-9
Zhao, 2015, A network pharmacology approach to determine active ingredients and rationality of herb combinations of Modified-Simiaowan for treatment of gout, J. Ethnopharmacol., 168, 1, 10.1016/j.jep.2015.03.035
Wan, 2019, Utilising network pharmacology to explore the underlying mechanism of Wumei Pill in treating pancreatic neoplasms, BMC Complement. Altern. Med., 19, 158, 10.1186/s12906-019-2580-y
Yu, 2016, Network pharmacology-based identification of key pharmacological pathways of Yin-Huang-Qing-Fei capsule acting on chronic bronchitis, Int. J. Chron. Obstruct. Pulmon. Dis., 12, 85, 10.2147/COPD.S121079
Ru, 2014, TCMSP: a database of systems pharmacology for drug discovery from herbal medicines, J. Cheminform., 6, 13, 10.1186/1758-2946-6-13
Consortium, 2018, UniProt: the universal protein knowledgebase, Nucleic Acids Res., 46, 2699, 10.1093/nar/gky092
Hao, 2013, Web search and data mining of natural products and their bioactivities in PubChem, Sci. China Chem., 56, 1424, 10.1007/s11426-013-4910-0
Daina, 2019, SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules, Nucleic Acids Res., 47, W357, 10.1093/nar/gkz382
Shannon, 2003, Cytoscape: a software environment for integrated models of biomolecular interaction networks, Genome Res., 13, 2498, 10.1101/gr.1239303
Szklarczyk, 2018, STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets, Nucleic Acids Res., 47, 1362
Guo, 2015, A systems biology perspective on the molecular mechanisms underlying the therapeutic effects of Buyang Huanwu decoction on ischemic stroke, Rejuvenation Res., 18, 313, 10.1089/rej.2014.1635
Zhang, 2013, A systems biology-based investigation into the pharmacological mechanisms of wu tou tang acting on rheumatoid arthritis by integrating network analysis, Evid. Based Complement. Altern. Med., 2013
Zhang, 2014, A systems biology-based investigation into the therapeutic effects of Gansui Banxia Tang on reversing the imbalanced network of hepatocellular carcinoma, Sci. Rep., 4, 4154, 10.1038/srep04154
Yu, 2012, ClusterProfiler: an R package for comparing biological themes among gene clusters, Omics A J. Integr. Biol., 16, 284, 10.1089/omi.2011.0118
Schrodinger, 2017
Morris, 2009, AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility, J. Comput. Chem., 30, 2785, 10.1002/jcc.21256
Trott, 2010, AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading, J. Comput. Chem., 31, 455
Li, 2012, A system-level investigation into the mechanisms of Chinese Traditional Medicine: compound Danshen Formula for cardiovascular disease treatment, PLoS One, 7
Zhou, 2015, Holistic analysis of seven active ingredients by micellar electrokinetic chromatography from three medicinal herbs composing Shuanghuanglian, J. Chromatogr. Sci., 53, 1786, 10.1093/chromsci/bmv067
Liu, 2011, Chemical correlation between Shuanghuanglian injection and its three raw herbs by LC fingerprint, J. Sep. Sci., 34, 1834, 10.1002/jssc.201000851
Ni, 2009, A strategy for evaluating antipyretic efficacy of Chinese herbal medicines based on UV spectra fingerprints, J. Ethnopharmacol., 124, 79, 10.1016/j.jep.2009.04.006
Zhou, 2015, Honeysuckle-encoded atypical microRNA2911 directly targets influenza A viruses, Cell Res., 25, 39, 10.1038/cr.2014.130
Gołba, 2020, Health properties and composition of honeysuckle berry Lonicera caerulea l. An update on recent studies, Molecules, 25, 749, 10.3390/molecules25030749
Zhao, 2019, Scutellaria baicalensis Georgi.(Lamiaceae): a review of its traditional uses, botany, phytochemistry, pharmacology and toxicology, J. Pharm. Pharmacol., 71, 1353, 10.1111/jphp.13129
Wang, 2018, Phytochemistry, pharmacology, quality control and future research of Forsythia suspensa (Thunb.) Vahl: a review, J. Ethnopharmacol., 210, 318, 10.1016/j.jep.2017.08.040
Zhong, 2011, Chinese guidelines for diagnosis and treatment of influenza (2011), J. Thorac. Dis., 3, 274
Zhang, 2017, Kaempferol ameliorates H9N2 swine influenza virus-induced acute lung injury by inactivation of TLR4/MyD88-mediated NF-κB and MAPK signaling pathways, Biomed. Pharmacother., 89, 660, 10.1016/j.biopha.2017.02.081
Chiow, 2016, Evaluation of antiviral activities of Houttuynia cordata Thunb. extract, quercetin, quercetrin and cinanserin on murine coronavirus and dengue virus infection, Asian Pac. J. Trop. Med., 9, 1, 10.1016/j.apjtm.2015.12.002
Guo, 2019, Quercetin alleviates lipopolysaccharide‐induced inflammatory responses by up‐regulation miR‐124 in human renal tubular epithelial cell line HK‐2, BioFactors, 1
Wu, 2005, Modulatory effects of plant phenols on human multidrug‐resistance proteins 1, 4 and 5 (ABCC1, 4 and 5), FEBS J., 272, 4725, 10.1111/j.1742-4658.2005.04888.x
van der Lugt, 2020, Dietary advanced glycation endproducts decrease glucocorticoid sensitivity in vitro, Nutrients, 12, 441, 10.3390/nu12020441
Lee, 2016, Characterization of neuraminidase inhibitors in Korean Papaver rhoeas bee pollen contributing to anti-influenza activities in vitro, Planta Med., 82, 524, 10.1055/s-0041-111631
Yi, 2004, Small molecules blocking the entry of severe acute respiratory syndrome coronavirus into host cells, J. Virol., 78, 11334, 10.1128/JVI.78.20.11334-11339.2004
Zhang, 2018, Inhibitory effects and related molecular mechanisms of total flavonoids in Mosla chinensis maxim against H1N1 influenza virus, Inflamm. Res., 67, 179, 10.1007/s00011-017-1109-4
Evers, 2005, Human cytomegalovirus-inhibitory flavonoids: studies on antiviral activity and mechanism of action, Antiviral Res., 68, 124, 10.1016/j.antiviral.2005.08.002
Xu, 2010, Inhibitory effects of baicalein on the influenza virus in vivo is determined by baicalin in the serum, Biol. Pharm. Bull., 33, 238, 10.1248/bpb.33.238
Rho, 2011, Kaempferol and kaempferol rhamnosides with depigmenting and anti-inflammatory properties, Molecules, 16, 3338, 10.3390/molecules16043338
Kim, 2010, Kaempferol modulates pro-inflammatory NF-κB activation by suppressing advanced glycation endproducts-induced NADPH oxidase, Age, 32, 197, 10.1007/s11357-009-9124-1
Seong, 2018, Wogonin, a flavonoid isolated from Scutellaria baicalensis, has anti-viral activities against influenza infection via modulation of AMPK pathways, Acta Virol., 62, 78, 10.4149/av_2018_109
Kim, 2013, Wogonin induces apoptosis by suppressing E6 and E7 expressions and activating intrinsic signaling pathways in HPV-16 cervical cancer cells, Cell Biol. Toxicol., 29, 259, 10.1007/s10565-013-9251-4
Choi, 2015, Wogonin inhibits Varicella-Zoster (shingles) virus replication via modulation of type I interferon signaling and adenosine monophosphate-activated protein kinase activity, J. Funct. Foods, 17, 399, 10.1016/j.jff.2015.05.031
Chi, 2003, Effects of wogonin, a plant flavone from Scutellaria radix, on skin inflammation: in vivo regulation of inflammation-associated gene expression, Biochem. Pharmacol., 66, 1271, 10.1016/S0006-2952(03)00463-5
Suga, 2008, Quantitative p16 and ESR1 methylation in the peripheral blood of patients with non-small cell lung cancer, Oncol. Rep., 20, 1137
Peretz, 2016, Estrogenic compounds reduce influenza A virus replication in primary human nasal epithelial cells derived from female, but not male, donors, American Journal of Physiology-Lung Cellular Molecular Physiology, 310, L415, 10.1152/ajplung.00398.2015
Litterst, 2003, NCoA-1/SRC-1 is an essential coactivator of STAT5 that binds to the FDL motif in the α-helical region of the STAT5 transactivation domain, J. Biol. Chem., 278, 45340, 10.1074/jbc.M303644200
Kalkhoven, 1998, Isoforms of steroid receptor co‐activator 1 differ in their ability to potentiate transcription by the oestrogen receptor, EMBO J., 17, 232, 10.1093/emboj/17.1.232
Takahashi, 2017, Biochanin A enhances RORγ activity through STAT3-mediated recruitment of NCOA1, Biochem. Biophys. Res. Commun., 489, 503, 10.1016/j.bbrc.2017.05.181
Wei, 2019, NCOA2 promotes lytic reactivation of Kaposi’s sarcoma-associated herpesvirus by enhancing the expression of the master switch protein RTA, PLoS Pathog., 15, 10.1371/journal.ppat.1008160
Hofman, 2003, The retinoblastoma protein-associated transcription repressor RBaK interacts with the androgen receptor and enhances its transcriptional activity, J. Mol. Endocrinol., 31, 583, 10.1677/jme.0.0310583
Mantalaris, 2001, Localization of androgen receptor expression in human bone marrow, J. Pathol., 193, 361, 10.1002/1096-9896(0000)9999:9999<::AID-PATH803>3.0.CO;2-W
Becerra-Díaz, 2018, Androgen and androgen receptor as enhancers of M2 macrophage polarization in allergic lung inflammation, J. Immunol., 201, 2923, 10.4049/jimmunol.1800352
Hicks, 2017, Androgen deprivation therapy for prostate cancer and the risk of hospitalisation for community-acquired pneumonia, Thorax, 72, 596, 10.1136/thoraxjnl-2016-209512
Zou, 2018, Brg1 aggravates airway inflammation in asthma via inhibition of the PI3K/Akt/mTOR pathway, Biochem. Biophys. Res. Commun., 503, 3212, 10.1016/j.bbrc.2018.08.127
Yu, 2019, Inhibition effects of patchouli alcohol against influenza a virus through targeting cellular PI3K/Akt and ERK/MAPK signaling pathways, Virol. J., 16, 1, 10.1186/s12985-019-1266-x
Zhang, 2018, Protective effects of diketopiperazines from Moslae Herba against influenza A virus-induced pulmonary inflammation via inhibition of viral replication and platelets aggregation, J. Ethnopharmacol., 215, 156, 10.1016/j.jep.2018.01.005
Groskreutz, 2007, Respiratory syncytial virus decreases p53 protein to prolong survival of airway epithelial cells, J. Immunol., 179, 2741, 10.4049/jimmunol.179.5.2741
Manka, 2018, Thyroid hormone in the regulation of hepatocellular carcinoma and its microenvironment, Cancer Lett., 419, 175, 10.1016/j.canlet.2018.01.055
Dentice, 2012, β-Catenin regulates deiodinase levels and thyroid hormone signaling in colon cancer cells, Gastroenterology, 143, 1037, 10.1053/j.gastro.2012.06.042
Simpson, 2016, Human cytomegalovirus infection and the immune response to exercise, Exerc. Immunol. Rev., 22, 8
Boomker, 2006, Kinetics of US28 gene expression during active human cytomegalovirus infection in lung-transplant recipients, J. Infect. Dis., 193, 1552, 10.1086/503779
Froberg, 2001, Cytomegalovirus infection accelerates inflammation in vascular tissue overexpressing monocyte chemoattractant protein-1, Circ. Res., 89, 1224, 10.1161/hh2401.100601
de Freitas, 2016, Human papillomavirus and lung cancinogenesis: an overview, J. Cancer Res. Clin. Oncol., 142, 2415, 10.1007/s00432-016-2197-1
Halimi, 2011, Human papillomavirus infection in lung vs. Oral squamous cell carcinomas: a polymerase chain reaction study, Pak. J. Biol. Sci., 14, 641, 10.3923/pjbs.2011.641.646
Xiong, 2017, The association between human papillomavirus infection and lung cancer: a system review and meta-analysis, Oncotarget, 8, 96419, 10.18632/oncotarget.21682
Hemmat, 2019, Association of human papillomavirus infection and inflammation in cervical cancer, Pathog. Dis., 77, 10.1093/femspd/ftz048
Ueno, 2013, Absence of human papillomavirus infection and activation of PI3K-AKT pathway in cervical clear cell carcinoma, Int. J. Gynecol. Cancer, 23, 1084, 10.1097/IGC.0b013e3182981bdc