Callose and cellulose synthase gene expression analysis from the tight cluster to the full bloom stage and during early fruit development in Malus × domestica

Abercrombie JM, O’Meara BC, Moffatt AR, Williams JH (2011) Developmental evolution of flowering plant pollen tube cell walls: callose synthase (CalS) gene expression patterns. Evodevo 2:14

Ali M, Emsley AM, Herman H, Heywood RJ (2001) Spectroscopic studies of the ageing of cellulosic paper. Polymer 42:2893–2900

Atkinson RG, Gardner RC (1993) A polygalacturonase gene from kiwifruit (Actinidia deliciosa). Plant Physiol 103:669–670

Atkinson RG, Schröder R, Hallett IC, Cohen D, MacRae EA (2002) Overexpression of polygalacturonase in transgenic apple trees leads to a range of novel phenotypes involving changes in cell adhesion. Plant Physiol 129:122–133

Barratt DH, Kölling K, Graf A, Pike M, Calder G, Findlay K, Zeeman SC, Smith AM (2011) Callose synthase GSL7 is necessary for normal phloem transport and inflorescence growth in Arabidopsis. Plant Physiol 155:328–341

Baum A, Agger J, Meyer AS, Egebo M, Mikkelsen JD (2012) Rapid near infrared spectroscopy for prediction of enzymatic hydrolysis of corn bran after various pretreatments. N Biotechnol 29:293–301

Bieleski RL (1993) Fructan hydrolysis drives petal expansion in the ephemeral daylily flower. Plant Physiol 103:213–219

Boyer J, Liu RH (2004) Apple phytochemicals and their health benefits. Nutr J 12:3–5

Brummell DA, Harpster MH (2001) Cell wall metabolism in fruit softening and quality and its manipulation in transgenic plants. Plant Mol Biol 47:311–340

Brummell DA, Harpster MH, Dunsmuir P (1999) Differential expression of expansin gene family members during growth and ripening of tomato fruit. Plant Mol Biol 39:161–169

Budzinski IG, Santos TB, Sera T, Pot D, Vieira LG, Pereira LF (2011) Expression patterns of three α-expansin isoforms in Coffea arabica during fruit development. Plant Biol (Stuttg) 13:462–471

Bustin SA, Benes V, Garson JA et al (2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem 55:611–622

Cai G, Faleri C, Del Casino C, Emons AM, Cresti M (2011) Distribution of callose synthase, cellulose synthase, and sucrose synthase in tobacco pollen tube is controlled in dissimilar ways by actin filaments and microtubules. Plant Physiol 155:1169–1190

Callahan AM, Morgens PH, Wright P, Nichols KE (1992) Comparison of Pch313 (pTOM13 homolog) RNA accumulation during fruit softening and wounding of two phenotypically different peach cultivars. Plant Physiol 100:482–488

Cantu D, Vicente AR, Greve LC, Dewey FM, Bennett AB, Labavitch JM, Powell AL (2008a) The intersection between cell wall disassembly, ripening, and fruit susceptibility to Botrytis cinerea. Proc Natl Acad Sci USA 105:859–864

Cantu D, Vicente AR, Labavitch JM, Bennett AB, Powell AL (2008b) Strangers in the matrix: plant cell walls and pathogen susceptibility. Trends Plant Sci 13:610–617

Carroll A, Mansoori N, Li S, Lei L, Vernhettes S, Visser RG, Somerville C, Gu Y, Trindade LM (2012) Complexes with mixed primary and secondary cellulose synthases are functional in Arabidopsis plants. Plant Physiol 160:726–737

Chaïb J, Devaux MF, Grotte MG, Robini K, Causse M, Lahaye M, Marty I (2007) Physiological relationships among physical, sensory, and morphological attributes of texture in tomato fruits. J Exp Bot 58:1915–1925

Civello PM, Powell AL, Sabehat A, Bennett AB (1999) An expansin gene expressed in ripening strawberry fruit. Plant Physiol 121:1273–1280

Cosgrove DJ (2005) Growth of the plant cell wall. Nat Rev Mol Cell Biol 6:850–861

Costa F, Alba R, Schouten H et al (2010) Use of homologous and heterologous gene expression profiling tools to characterize transcription dynamics during apple fruit maturation and ripening. BMC Plant Biol 10:229

Devoghalaere F, Doucen T, Guitton B et al (2012) A genomics approach to understanding the role of auxin in apple (Malus × domestica) fruit size control. BMC Plant Biol 12:7

Dong Y-H, Janssen B-J, Bieleski LRF, Atkinson RG, Morris BAM (1997) Isolating and characterizing genes differentially expressed early in apple fruit development. J Am Soc Hortic Sci 122:752–757

Fujimoto T, Kurata Y, Matsumoto K, Tsuchika S (2008) Application of near infrared spectroscopy for estimating wood mechanical properties of small clear and full length lumber specimens. JNIRS 16:529–537

Gallus S, Talamini R, Giacosa A, Montella M, Ramazzotti V, Franceschi S, Negri E, La Vecchia C (2005) Does an apple a day keep the oncologist away? Ann Oncol 16:1841–1844

Gambino G, Perrone I, Gribaudo I (2008) A rapid and effective method for RNA extraction from different tissues of grapevine and other woody plants. Phytochem Anal 19:520–525

Geisler-Lee J, Geisler M, Coutinho PM et al (2006) Poplar carbohydrate-active enzymes. Gene identification and expression analyses. Plant Physiol 140:946–962

Giorno F, Guerriero G, Baric S, Mariani C (2012) Heat shock transcriptional factors in Malus domestica: identification, classification and expression analysis. BMC Genomics 13:639

Gu Z, Cavalcanti A, Chen FC, Bouman P, Li WH (2002) Extent of gene duplication in the genomes of Drosophila, nematode, and yeast. Mol Biol Evol 19:256–262

Guerriero G, Spadiut O, Kerschbamer C, Giorno F, Baric S, Ezcurra I (2012a) Analysis of cellulose synthase genes from domesticated apple identifies collinear genes WDR53 and CesA8A: partial co-expression, bicistronic mRNA, and alternative splicing of CESA8A. J Exp Bot 63:6045–6056

Guerriero G, Giorno F, Ciccotti AM, Schmidt S, Baric S (2012b) A gene expression analysis of cell wall biosynthetic genes in Malus × domestica infected by ‘Candidatus Phytoplasma mali’. Tree Physiol 32:1365–1377

Guignard C, Jouve L, Bogeat-Triboulot MB, Dreyer E, Hausman JF, Hoffmann L (2005) Analysis of carbohydrates in plants by high performance anion-exchange chromatography coupled with electrospray mass spectrometry. J Chromatogr 1085:137–142

Guo S, Liu J, Zheng Y, Huang M, Zhang H, Gong G, He H, Ren Y, Zhong S, Fei Z, Xu Y (2011) Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles. BMC Genomics 12:454

Hadfield KA, Rose JK, Yaver DS, Berka RM, Bennett AB (1998) Polygalacturonase gene expression in ripe melon fruit supports a role for polygalacturonase in ripening-associated pectin disassembly. Plant Physiol 117:363–373

Hamann T, Denness L (2011) Cell wall integrity maintenance in plants: lessons to be learned from yeast? Plant Signal Behav 6:1706–1709

Hames BR, Thomas SR, Sluiter AD, Roth CJ, Templeton DW (2003) Rapid biomass analysis: new tools for compositional analysis of corn stover feedstocks and process intermediates from ethanol production. Appl Biochem Biotechnol 105–108:5–16

Hanke M-V, Flachowsky H, Peil A, Hättasch C (2007) No flower no fruit—genetic potentials to trigger flowering in fruit trees. Genes Genomes Genomics 1:1–20

Hématy K, Cherk C, Somerville S (2009) Host-pathogen warfare at the plant cell wall. Curr Opin Plant Biol 12:406–413

Hiwasa K, Rose JK, Nakano R, Inaba A, Kubo Y (2003) Differential expression of seven alpha-expansin genes during growth and ripening of pear fruit. Physiol Plant 117:564–572

Hong Z, Delauney AJ, Verma DP (2001) A cell plate-specific callose synthase and its interaction with phragmoplastin. Plant Cell 13:755–768

Huang L, Chen XY, Rim Y, Han X, Cho WK, Kim SW, Kim JY (2009) Arabidopsis glucan synthase-like 10 functions in male gametogenesis. J Plant Physiol 166:344–352

Humphrey TV, Bonetta DT, Goring DR (2007) Sentinels at the wall: cell wall receptors and sensors. New Phytol 176:7–21

Ishimaru M, Smith DL, Gross KC, Kobayashi S (2007) Expression of three expansin genes during development and maturation of Kyoho grape berries. J Plant Physiol 164:1675–1682

Jackson JE (2003) Biology of apples and pears. Cambridge University Press, Cambridge

Janssen BJ, Thodey K, Schaffer RJ et al (2008) Global gene expression analysis of apple fruit development from the floral bud to ripe fruit. BMC Plant Biol 8:16

Jin Y, Ni DA, Ruan YL (2009) Posttranslational elevation of cell wall invertase activity by silencing its inhibitor in tomato delays leaf senescence and increases seed weight and fruit hexose level. Plant Cell 21:2072–2089

Kim YK, Xiao CL (2006) A postharvest fruit rot in apple caused by Phacidiopycnis washingtonensis. Plant Dis 90:1376–1381

Kutsunai SY, Lin AC, Percival FW, Laties GG, Christoffersen RE (1993) Ripening-related polygalacturonase cDNA from avocado. Plant Physiol 103:289–290

Lebon G, Wojnarowiez G, Holzapfel B, Fontaine F, Vaillant-Gaveau N, Clément C (2008) Sugars and flowering in the grapevine (Vitis vinifera L.). J Exp Bot 59:2565–2578

Lee YP, Yu GH, Seo YS, Han SE, Choi YO, Kim D, Mok IG, Kim WT, Sung SK (2007) Microarray analysis of apple gene expression engaged in early fruit development. Plant Cell Rep 26:917–926

Li Y, Jones L, McQueen-Mason S (2003) Expansins and cell growth. Curr Opin Plant Biol 6:603–610

Li M, Feng F, Cheng L (2012) Expression patterns of genes involved in sugar metabolism and accumulation during apple fruit development. PLoS One 7:e33055

Longhi S, Moretto M, Viola R, Velasco R, Costa F (2012) Comprehensive QTL mapping survey dissects the complex fruit texture physiology in apple (Malus × domestica Borkh.). J Exp Bot 63:1107–1121

Losada JM, Herrero M (2012) Arabinogalactan-protein secretion is associated with the acquisition of stigmatic receptivity in the apple flower. Ann Bot 110:573–584

Malladi A, Johnson LK (2011) Expression profiling of cell cycle genes reveals key facilitators of cell production during carpel development, fruit set, and fruit growth in apple (Malus × domestica Borkh.). J Exp Bot 62:205–219

Mann HS, Alton JJ, Kim SH, Tong CBS (2008) Differential expression of cell-wall—modifying genes and novel cDNAs in apple fruit during storage. J Am Soc Hortic Sci 133:1–6

Mattioli R, Marchese D, D’Angeli S, Altamura MM, Costantino P, Trovato M (2008) Modulation of intracellular proline levels affects flowering time and inflorescence architecture in Arabidopsis. Plant Mol Biol 66:277–288

Meyers BC, Kaushik S, Nandety RS (2005) Evolving disease resistance genes. Curr Opin Plant Biol 8:129–134

Muller PY, Janovjak H, Miserez AR, Dobbie Z (2002) Processing of gene expression data generated by quantitative real-time RT-PCR. Biotechniques 32:1372–1374 1376, 1378–1379

Nishizawa-Yokoi A, Yabuta Y, Shigeoka S (2008) The contribution of carbohydrates including raffinose family oligosaccharides and sugar alcohols to protection of plant cells from oxidative damage. Plant Signal Behav 3:1016–1018

Nunes C, Usall J, Teixidó N, Ochoa de Eribe XO, Viñas I (2001) Control of post-harvest decay of apples by pre-harvest and post-harvest application of ammonium molybdate. Pest Manag Sci 57:1093–1099

Park S, Sugimoto N, Larson MD, Beaudry R, van Nocker S (2006) Identification of genes with potential roles in apple fruit development and biochemistry through large-scale statistical analysis of expressed sequence tags. Plant Physiol 141:811–824

Pastene E, Speisky H, TronAcoso M, Alarcón J, Figueroa G (2009) In vitro inhibitory effect of apple peel extract on the growth of Helicobacter pylori and respiratory burst induced on human neutrophils. J Agric Food Chem 57:7743–7749

Percy AE, O’Brien IEW, Jameson PE, Melton LD, MacRae EA, Redgwell RJ (1996) Xyloglucan endotransglycosylase activity during fruit development and ripening of apple and kiwifruit. Physiol Plantarum 96:43–50

Reagan-Shaw S, Eggert D, Mukhtar H, Ahmad N (2010) Antiproliferative effects of apple peel extract against cancer cells. Nutr Cancer 62:517–524

Redondo-Nevado J, Moyano E, Medina-Escobar N, Caballero JL, Muñoz-Blanco J (2001) A fruit-specific and developmentally regulated endopolygalacturonase gene from strawberry (Fragaria × ananassa cv. Chandler). J Exp Bot 52:1941–1945

Ringli C (2010) Monitoring the outside: cell wall-sensing mechanisms. Plant Physiol 153:1445–1452

Rose JK, Lee HH, Bennett AB (1997) Expression of a divergent expansin gene is fruit-specific and ripening-regulated. Proc Natl Acad Sci USA 94:5955–5960

Rose JK, Hadfield KA, Labavitch JM, Bennett AB (1998) Temporal sequence of cell wall disassembly in rapidly ripening melon fruit. Plant Physiol 117:345–361

Salentijn EMJ, Aharoni A, Schaart JG, Boone MJ, Krens FA (2003) Differential gene expression analysis of strawberry cultivars that differ in fruit-firmness. Physiol Plantarum 118:571–578

Schimleck LR, Evans R (2004) Estimation of P. radiata D. Don tracheid morphological characteristics by near infrared spectroscopy. Holzforschung 58:66–73

Schimleck LR, Kube PS, Raymond CA (2004) Genetic improvement of kraft pulp yield in Eucalyptus nitens using cellulose content determined by near infrared spectroscopy. Can J For Res 34:2363–2370

Sherson SM, Alford HL, Forbes SM, Wallace G, Smith SM (2003) Roles of cell-wall invertases and monosaccharide transporters in the growth and development of Arabidopsis. J Exp Bot 54:525–531

Sitrit Y, Bennett AB (1998) Regulation of tomato fruit polygalacturonase mRNA accumulation by ethylene: a re-examination. Plant Physiol 116:1145–1150

Smith-Moritz AM, Chern M, Lao J, Sze-To WH, Heazlewood JL, Ronald PC, Vega-Sánchez ME (2011) Combining multivariate analysis and monosaccharide composition modeling to identify plant cell wall variations by Fourier transform near infrared spectroscopy. Plant Methods 18:7–26

Stone BA, Clarke AE (1992) Chemistry and biology of (1 → 3)-β-glucans. La Trobe University Press, Victoria

Troyanskaya O, Cantor M, Sherlock G, Brown P, Hastie T, Tibshirani R, Botstein D, Altman RB (2001) Missing value estimation methods for DNA microarrays. Bioinformatics 17:520–525

Turner SR (2007) Cell walls: monitoring integrity with the kinase. Curr Biol 17:R541–R542

Vatén A, Dettmer J, Wu S et al (2011) Callose biosynthesis regulates symplastic trafficking during root development. Dev Cell 21:1144–1155

Velasco R, Zharkikh A, Affourtit J et al (2010) The genome of the domesticated apple (Malus × domestica Borkh.). Nat Genet 42:833–839

Vicente AR, Ortugno C, Powell Ann LT, Greve C, Labavitch JM (2007a) The temporal sequence of cell wall disassembly events in developing fruits: 1. Analysis of raspberry. J Agric Food Chem 55:4119–4124

Vicente AR, Ortugno C, Rosli H, Powell Ann LT, Greve C, Labavitch J (2007b) The temporal sequence of cell wall disassembly events in developing fruits: 2. Analysis of blueberry. J Agric Food Chem 55:4125–4130

Wakasa Y, Hatsuyama Y, Takahashi A, Sato T, Niizeki M, Harada T (2003) Divergent expression of six expansin genes during apple fruit ontogeny. Eur J Hortic Sci 68:S253–S259

Waldron KW, Parker ML, Smith AC (2003) Plant cell walls and food quality. Compr Rev Food Sci F 2:101–119

Wang G, Gao Y, Wang J, Yang L, Song R, Li X, Shi J (2011) Overexpression of two cambium-abundant Chinese fir (Cunninghamia lanceolata) α-expansin genes ClEXPA1 and ClEXPA2 affect growth and development in transgenic tobacco and increase the amount of cellulose in stem cell walls. Plant Biotechnol J 9:486–502

Workman J Jr, Weyer L (2007) Practical guide to near-infrared spectroscopy. CRC Press, Boca Raton

Xie B, Wang X, Zhu M, Zhang Z, Hong Z (2011) CalS7 encodes a callose synthase responsible for callose deposition in the phloem. Plant J 65:1–14

Yang S, Zhang X, Yue JX, Tian D, Chen JQ (2008) Recent duplications dominate NBS-encoding gene expansion in two woody species. Mol Gen Genomics 280:187–198

Zenoni S, Reale L, Tornielli GB, Lanfaloni L, Porceddu A, Ferrarini A, Moretti C, Zamboni A, Speghini A, Ferranti F, Pezzotti M (2004) Down-regulation of the Petunia hybrida alpha-expansin gene PhEXP1 reduces the amount of crystalline cellulose in cell walls and leads to phenotypic changes in petal limbs. Plant Cell 16:295–308