CUDA simulations of active dumbbell suspensions

Chemical Physics - Tập 375 - Trang 557-567 - 2010
Victor B. Putz1, Jörn Dunkel1, Julia M. Yeomans1
1Rudolf Peierls Centre for Theoretical Physics, University of Oxford, 1 Keble Road, Oxford OX1 3NP, United Kingdom

Tài liệu tham khảo

Toner, 2005, Ann. Phys., 318, 170, 10.1016/j.aop.2005.04.011 Purcell, 1977, Am. J. Phys., 45, 3, 10.1119/1.10903 Hänggi, 2009, Rev. Mod. Phys., 81, 387, 10.1103/RevModPhys.81.387 Lauga, 2008, Phys. Rev. E, 78, 030901(R), 10.1103/PhysRevE.78.030901 Alexander, 2008, Europhys. Lett., 83, 34006, 10.1209/0295-5075/83/34006 Hänggi, 1982, Phys. Rep., 88, 207, 10.1016/0370-1573(82)90045-X L. Genovese, M. Ospici, T. Deutsch, J.-F. Méhaut, A. Neelov, S. Goedecker, Density functional theory calculation on many-cores hybrid CPU-GPU architectures, 2009, arXiv:0904.1543v1. Preis, 2009, J. Comput. Phys., 228, 4468, 10.1016/j.jcp.2009.03.018 Januszewski, 2010, Comput. Phys. Commun., 181, 183, 10.1016/j.cpc.2009.09.009 A.C. Thomson, C.J. Fluke, D.G. Barnes, B.R. Barsdell, Teraflop per second gravitational lensing ray-shooting using graphics processing units, 2009, arXiv:0905.2453v1. Davis, 1969, Chem. Eng. Sci., 24, 1769, 10.1016/0009-2509(69)87020-X Tabakova, 1982, J. Appl. Math. Phys. (ZAMP), 33, 344, 10.1007/BF00944443 Öttinger, 1989, Colloid Polym. Sci., 267, 1, 10.1007/BF01410142 Almog, 1993, J. Colloid Interface Sci., 157, 60, 10.1006/jcis.1993.1158 Sendner, 2007, Europhys. Lett., 79, 58004, 10.1209/0295-5075/79/58004 Bammert, 2008, Phys. Rev. E, 77, 042102, 10.1103/PhysRevE.77.042102 Sun, 2008, J. Chem. Phys., 128, 234107, 10.1063/1.2936991 Baskaran, 2009, PNAS, 106, 15567, 10.1073/pnas.0906586106 Murphy, 1972, J. Chem. Phys., 57, 2098, 10.1063/1.1678535 Bixon, 1976, Ann. Rev. Phys. Chem., 27, 65, 10.1146/annurev.pc.27.100176.000433 B. Dünweg, J.C. Ladd, Advanced Computer Simulation Approaches for Soft Matter Sciences III, Advanced in Polymer Science Lattice Boltzmann Simulations of Soft Matter Systems, vol. 221, Springer, Berlin, Heidelberg, 2009, pp. 89–166. Liu, 2003, J. Chem. Phys., 118, 8061, 10.1063/1.1564047 Dunkel, 2009, Phys. Rev. E, 80, 021903, 10.1103/PhysRevE.80.021903 Brady, 1988, Ann. Rev. Fluid Mech., 20, 111, 10.1146/annurev.fl.20.010188.000551 Gammaitoni, 1998, Rev. Mod. Phys., 70, 223, 10.1103/RevModPhys.70.223 Rotne, 1969, J. Chem. Phys., 50, 4831, 10.1063/1.1670977 Yamakawa, 1970, J. Chem. Phys., 53, 436, 10.1063/1.1673799 Oseen, 1927 Happel, 1965 Mazur, 1982, Physica, 110A, 128, 10.1016/0378-4371(82)90107-8 Baskaran, 2008, Hydrodynamics of self-propelled hard rods, Phys. Rev. E, 77, 011920, 10.1103/PhysRevE.77.011920 Yang, 2008, Phys. Rev. E, 78, 061903, 10.1103/PhysRevE.78.061903 Saintillan, 2005, Phys. Fluids, 17, 033301, 10.1063/1.1862262 Brady, 1988, Ann. Rev. Fluid Mech., 20, 111, 10.1146/annurev.fl.20.010188.000551 Sierou, 2001, J. Fluid Mech., 448, 115, 10.1017/S0022112001005912 Nyland, 2007, Fast n-body simulation with Cuda, 677 J.H. Jung, Cholesky Decomposition and Linear Programming on a GPU, Tech. Rep., Department of Computer Science, University of Maryland, 2006. V. Volkov, J.W. Demmel, LU, QR and Cholesky Factorizations using Vector Capabilities of GPUs, No. ucb/eecs-2008-49, EECS Department,University of California, Berkeley, 2008. Leoni, 2009, Soft Matter, 5, 472, 10.1039/B812393D Ramaswamy, 2002, Phys. Rev. Lett., 89, 058101, 10.1103/PhysRevLett.89.058101