CELLULOSE DEGRADATION BY OXIDATIVE ENZYMES
Tài liệu tham khảo
Panwar, 2011, Role of renewable energy sources in environmental protection: A review, Renewable and Sustainable Energy Reviews, 15, 1513, 10.1016/j.rser.2010.11.037
Energy USDo (2010) Biomass basics: The facts about bioenergy.
Sims, 2010, An overview of second generation biofuel technologies, Bioresour Technol, 101, 1570, 10.1016/j.biortech.2009.11.046
Sun, 2002, Hydrolysis of lignocellulosic materials for ethanol production: a review, Bioresour Technol, 83, 1, 10.1016/S0960-8524(01)00212-7
Himmel, 2007, Biomass recalcitrance: engineering plants and enzymes for biofuels production, Science, 315, 804, 10.1126/science.1137016
Atalla, 1984, Native cellulose: a composite of two distinct crystalline forms, Science, 223, 283, 10.1126/science.223.4633.283
Cosgrove, 2005, Growth of the plant cell wall, Nat Rev Mol Cell Biol, 6, 850, 10.1038/nrm1746
Zhao, 2012, Bioethanol from lignocellulosic biomass, Adv Biochem Eng Biotechnol, 128, 25
Jordan, 2012, Plant cell walls to ethanol, Biochem J, 442, 241, 10.1042/BJ20111922
Nag, 2007
Lynd, 2002, Microbial cellulose utilization: fundamentals and biotechnology, Microbiol Mol Biol Rev, 66, 506, 10.1128/MMBR.66.3.506-577.2002
Martinez, 2009, Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion, Proc Natl Acad Sci U S A, 106, 1954, 10.1073/pnas.0809575106
Baldrian, 2008, Degradation of cellulose by basidiomycetous fungi, FEMS Microbiol Rev, 32, 501, 10.1111/j.1574-6976.2008.00106.x
Reese, 1950, The biological degradation of soluble cellulose derivatives and its relationship to the mechanism of cellulose hydrolysis, Journal of Bacteriology, 59, 485, 10.1128/JB.59.4.485-497.1950
Zhang, 2004, Toward an aggregated understanding of enzymatic hydrolysis of cellulose: noncomplexed cellulase systems, Biotechnol Bioeng, 88, 797, 10.1002/bit.20282
Arantes, 2010, Access to cellulose limits the efficiency of enzymatic hydrolysis: the role of amorphogenesis, Biotechnol Biofuels, 3, 4, 10.1186/1754-6834-3-4
Merino, 2007, Progress and challenges in enzyme development for biomass utilization, Adv Biochem Eng Biotechnol, 108, 95
Henrissat, 1991, A classification of glycosyl hydrolases based on amino acid sequence similarities, Biochem J, 280, 309, 10.1042/bj2800309
Cantarel, 2009, The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics, Nucleic Acids Res, 37, D233, 10.1093/nar/gkn663
Zifcakova, 2012, Fungal polysaccharide monooxygenases: new players in the decomposition of cellulose, Fungal ecology, 1
Karlsson, 2001, Homologous expression and characterization of Cel61A (EG IV) of Trichoderma reesei, Eur J Biochem, 268, 6498, 10.1046/j.0014-2956.2001.02605.x
Koseki, 2008, Biochemical characterization of a glycoside hydrolase family 61 endoglucanase from Aspergillus kawachii, Appl Microbiol Biotechnol, 77, 1279, 10.1007/s00253-007-1274-4
Harris, 2010, Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family, Biochemistry, 49, 3305, 10.1021/bi100009p
Dimarogona, 2012, Lignin boosts the cellulase performance of a GH-61 enzyme from Sporotrichum thermophile, Bioresour Technol, 110, 480, 10.1016/j.biortech.2012.01.116
Karkehabadi, 2008, The first structure of a glycoside hydrolase family 61 member, Cel61B from Hypocrea jecorina, at 1.6 A resolution, J Mol Biol, 383, 144, 10.1016/j.jmb.2008.08.016
Vaaje-Kolstad, 2005, Crystal structure and binding properties of the Serratia marcescens chitin-binding protein CBP21, J Biol Chem, 280, 11313, 10.1074/jbc.M407175200
Raush, 2009, A new method for publishing three-dimensional content, PLoS One, 4, e7394, 10.1371/journal.pone.0007394
Dahiya, 2006, Biotechnological aspects of chitinolytic enzymes: a review, Appl Microbiol Biotechnol, 71, 773, 10.1007/s00253-005-0183-7
Schrempf, 2001, Recognition and degradation of chitin by streptomycetes, Antonie Van Leeuwenhoek, 79, 285, 10.1023/A:1012058205158
Vaaje-Kolstad, 2005, The non-catalytic chitin-binding protein CBP21 from Serratia marcescens is essential for chitin degradation, J Biol Chem, 280, 28492, 10.1074/jbc.M504468200
Vaaje-Kolstad, 2010, An oxidative enzyme boosting the enzymatic conversion of recalcitrant polysaccharides, Science, 330, 219, 10.1126/science.1192231
Vaaje-Kolstad, 2012, Characterization of the chitinolytic machinery of Enterococcus faecalis V583 and high-resolution structure of its oxidative CBM33 enzyme, J Mol Biol, 416, 239, 10.1016/j.jmb.2011.12.033
Forsberg, 2011, Cleavage of cellulose by a CBM33 protein, Protein Sci, 20, 1479, 10.1002/pro.689
Horn, 2012, Novel enzymes for the degradation of cellulose, Biotechnol Biofuels, 5, 45, 10.1186/1754-6834-5-45
Quinlan, 2011, Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components, Proc Natl Acad Sci U S A, 10.1073/pnas.1105776108
Wymelenberg, 2009, Transcriptome and secretome analyses of Phanerochaete chrysosporium reveal complex patterns of gene expression, Appl Environ Microbiol, 75, 4058, 10.1128/AEM.00314-09
Westereng, 2011, The putative endoglucanase PcGH61D from Phanerochaete chrysosporium is a metal-dependent oxidative enzyme that cleaves cellulose, PLoS One, 6, e27807, 10.1371/journal.pone.0027807
Phillips, 2011, Cellobiose dehydrogenase and a copper-dependent polysaccharide monooxygenase potentiate cellulose degradation by Neurospora crassa, ACS Chem Biol, 6, 1399, 10.1021/cb200351y
Beeson, 2011, Extracellular aldonolactonase from Myceliophthora thermophila, Appl Environ Microbiol, 77, 650, 10.1128/AEM.01922-10
Kopper, 2003, The Composition of Keto Aldoses in Aqueous Solution as Determined by NMR Spectroscopy, Helv Chim Acta, 86, 827, 10.1002/hlca.200390083
Li, 2012, Structural basis for substrate targeting and catalysis by fungal polysaccharide monooxygenases, Structure, 20, 1051, 10.1016/j.str.2012.04.002
Sievers, 2011, Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega, Mol Syst Biol, 7, 539, 10.1038/msb.2011.75
Gouet, 1999, ESPript: analysis of multiple sequence alignments in PostScript, Bioinformatics, 15, 305, 10.1093/bioinformatics/15.4.305
Beeson, 2012, Oxidative cleavage of cellulose by fungal copper-dependent polysaccharide monooxygenases, J Am Chem Soc, 134, 890, 10.1021/ja210657t
Mba Medie, 2012, Genome analyses highlight the different biological roles of cellulases, Nat Rev Microbiol, 10, 227, 10.1038/nrmicro2729
Zamocky, 2006, Cellobiose dehydrogenase–a flavocytochrome from wood-degrading, phytopathogenic and saprotropic fungi, Curr Protein Pept Sci, 7, 255, 10.2174/138920306777452367
Harreither, 2011, Catalytic properties and classification of cellobiose dehydrogenases from ascomycetes, Appl Environ Microbiol, 77, 1804, 10.1128/AEM.02052-10
Subramaniam, 1999, Cloning and characterization of a thermostable cellobiose dehydrogenase from Sporotrichum thermophile, Arch Biochem Biophys, 365, 223, 10.1006/abbi.1999.1152
Cameron, 2001, Cellobiose dehydrogenase-an extracellular fungal flavocytochrome, Enzyme Microb Technol, 28, 129, 10.1016/S0141-0229(00)00307-0
Henriksson, 2000, A critical review of cellobiose dehydrogenases, J Biotechnol, 78, 93, 10.1016/S0168-1656(00)00206-6
Hallberg, 2003, Mechanism of the reductive half-reaction in cellobiose dehydrogenase, J Biol Chem, 278, 7160, 10.1074/jbc.M210961200
Hallberg, 2000, A new scaffold for binding haem in the cytochrome domain of the extracellular flavocytochrome cellobiose dehydrogenase, Structure, 8, 79, 10.1016/S0969-2126(00)00082-4
Wilson, 2012, Processive and nonprocessive cellulases for biofuel production–lessons from bacterial genomes and structural analysis, Appl Microbiol Biotechnol, 93, 497, 10.1007/s00253-011-3701-9
Langston, 2011, Oxidoreductive cellulose depolymerization by the enzymes cellobiose dehydrogenase and glycoside hydrolase 61, Appl Environ Microbiol, 10.1128/AEM.05815-11
Sygmund, 2012, Characterization of the two Neurospora crassa cellobiose dehydrogenases and their connection to oxidative cellulose degradation, Appl Environ Microbiol, 10.1128/AEM.01503-12
Langston, 2012, Cloning, expression, and characterization of a cellobiose dehydrogenase from Thielavia terrestris induced under cellulose growth conditions, Biochim Biophys Acta, 1824, 802, 10.1016/j.bbapap.2012.03.009
Vanden Wymelenberg, 2010, Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium, Appl Environ Microbiol, 76, 3599, 10.1128/AEM.00058-10
Turbe-Doan, 2012, Heterologous production of cellobiose dehydrogenases from the basidiomycete Coprinopsis cinerea and the ascomycete Podospora anserina and their effect on saccharification of wheat straw, Appl Microbiol Biotechnol
Yakovlev, 2012, Substrate-specific transcription of the enigmatic GH61 family of the pathogenic white-rot fungus Heterobasidion irregulare during growth on lignocellulose, Appl Microbiol Biotechnol, 95, 979, 10.1007/s00253-012-4206-x
Berka, 2011, Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris, Nat Biotechnol, 29, 922, 10.1038/nbt.1976
Kostylev, 2012, Synergistic interactions in cellulose hydrolysis, Biofuels, 3, 61, 10.4155/bfs.11.150
Cannella, 2012, Production and effect of aldonic acids during enzymatic hydrolysis of lignocellulose at high dry matter content, Biotechnol Biofuels, 5, 26, 10.1186/1754-6834-5-26