Building functional groups of marine benthic macroinvertebrates on the basis of general community assembly mechanisms

Alexandridis, 2012, Modeling the effects of abiotic and biotic factors on the depth distribution of Fucus vesiculosus in the Baltic Sea, Mar. Ecol. Prog. Ser., 463, 59, 10.3354/meps09856 Bellard, 2012, Impacts of climate change on the future of biodiversity, Ecol. Lett., 15, 365, 10.1111/j.1461-0248.2011.01736.x Beukema, 2000, Long-term observations on the dynamics of three species of polychaetes living on tidal flats of the Wadden Sea: the role of weather and predator–prey interactions, J. Anim. Ecol., 69, 31, 10.1046/j.1365-2656.2000.00368.x Blanchet, 2008, Modelling directional spatial processes in ecological data, Ecol. Model., 215, 325, 10.1016/j.ecolmodel.2008.04.001 Bonnot-Courtois, 1991 Botta-Dukát, 2005, Rao's quadratic entropy as a measure of functional diversity based on multiple traits, J. Veg. Sci., 16, 533, 10.1111/j.1654-1103.2005.tb02393.x Boulangeat, 2014, FATE-HD: a spatially and temporally explicit integrated model for predicting vegetation structure and diversity at regional scale, Glob. Chang. Biol., 20, 2368, 10.1111/gcb.12466 Boulangeat, 2012, Improving plant functional groups for dynamic models of biodiversity: at the crossroads between functional and community ecology, Glob. Chang. Biol., 18, 3464, 10.1111/j.1365-2486.2012.02783.x Bremner, 2008, Species' traits and ecological functioning in marine conservation and management, J. Exp. Mar. Biol. Ecol., 366, 37, 10.1016/j.jembe.2008.07.007 Bremner, 2006 Bremner, 2006, Methods for describing ecological functioning of marine benthic assemblages using biological traits analysis (BTA), Ecol. Indic., 6, 609, 10.1016/j.ecolind.2005.08.026 Brose, 2006, Consumer-resource body-size relationships in natural food webs, Ecology, 87, 2411, 10.1890/0012-9658(2006)87[2411:CBRINF]2.0.CO;2 Cardeccia, 2016, Assessing biological invasions in European Seas: biological traits of the most widespread non-indigenous species, Estuar Coast Shelf S Chevenet, 1994, A fuzzy coding approach for the analysis of long-term ecological data, Freshw. Biol., 31, 295, 10.1111/j.1365-2427.1994.tb01742.x Clarke, 1993, Non-parametric multivariate analyses of changes in community structure, Aust. J. Ecol., 18, 117, 10.1111/j.1442-9993.1993.tb00438.x Core Team, 2015 Darr, 2014, Functional changes in benthic communities along a salinity gradient — a western Baltic case study, J. Sea Res., 85, 315, 10.1016/j.seares.2013.06.003 Desroy, 1998 Dray, 2007, The ade4 package: implementing the duality diagram for ecologists, J. Stat. Softw., 22, 1, 10.18637/jss.v022.i04 Dray, 2006, Spatial modelling: a comprehensive framework for principal coordinate analysis of neighbour matrices (PCNM), Ecol. Model., 196, 483, 10.1016/j.ecolmodel.2006.02.015 Ferguson, 2013, Competition in benthic marine invertebrates: the unrecognized role of exploitative competition for oxygen, Ecology, 94, 126, 10.1890/12-0795.1 Frid, 2008, Incorporating ecological functioning into the designation and management of marine protected areas, Hydrobiologia, 606, 69, 10.1007/s10750-008-9343-y Garcia, 2011, Assessment of benthic ecosystem functioning through trophic web modelling: the example of the eastern basin of the English Channel and the Southern Bight of the North Sea, Mar. Ecol., 32, 72, 10.1111/j.1439-0485.2011.00428.x Garnier, 2004, Plant functional markers capture ecosystem properties during secondary succession, Ecology, 85, 2630, 10.1890/03-0799 Gower, 1971, A general coefficient of similarity and some of its properties, Biometrics, 27, 857, 10.2307/2528823 Grime, 1997, Biodiversity and ecosystem function: the debate deepens, Science, 277, 1260, 10.1126/science.277.5330.1260 Grime, 1998, Benefits of plant diversity to ecosystems: immediate, filter and founder effects, J. Ecol., 86, 902, 10.1046/j.1365-2745.1998.00306.x Hairston, 1993, Cause-effect relationships in energy flow, trophic structure, and interspecific interactions, Am. Nat., 142, 379, 10.1086/285546 Harrell, 2015, Hmisc: Harrell miscellaneous, R package version, 3, 15 Hérault, 2007, Reconciling niche and neutrality through the emergent group approach, Perspect. Plant Ecol., 9, 71, 10.1016/j.ppees.2007.08.001 Herman, 1999, Ecology of estuarine macrobenthos, Adv. Ecol. Res., 29, 195, 10.1016/S0065-2504(08)60194-4 Hoeffding, 1948, A non-parametric test of independence, Ann. Math. Stat., 19, 546, 10.1214/aoms/1177730150 Hubbell, 2005, Neutral theory in community ecology and the hypothesis of functional equivalence, Funct. Ecol., 19, 166, 10.1111/j.0269-8463.2005.00965.x Hutchinson, 1957, Concluding remarks, Cold Spring Harb Sym, 22, 415, 10.1101/SQB.1957.022.01.039 Ings, 2009, Review: ecological networks — beyond food webs, J. Anim. Ecol., 78, 253, 10.1111/j.1365-2656.2008.01460.x James, 1990, Multivariate analysis in ecology and systematics: panacea or Pandora's box?, Annu. Rev. Ecol. Syst., 21, 129, 10.1146/annurev.es.21.110190.001021 Jax, 2005, Function and “functioning” in ecology: what does it mean?, Oikos, 111, 641, 10.1111/j.1600-0706.2005.13851.x Jetz, 2004, The scaling of animal space use, Science, 306, 266, 10.1126/science.1102138 Jimenez, 2015, Harvesting effects on functional structure and composition of tropical invertebrate assemblages, ICES J. Mar. Sci., 73, 420, 10.1093/icesjms/fsv179 Kéfi, 2012, More than a meal… integrating non-feeding interactions into food webs, Ecol. Lett., 15, 291, 10.1111/j.1461-0248.2011.01732.x Kirby, 2009, Comparing environmental effects of Rance and Severn barrages, Proc Inst Civ Eng Marit Eng, 162, 11 Kruskal, 1952, Use of ranks in one-criterion variance analysis, J. Am. Stat. Assoc., 47, 583, 10.1080/01621459.1952.10483441 Laliberté, 2014 Lavorel, 1997, Plant functional classifications: from general groups to specific groups based on response to disturbance, Trends Ecol. Evol., 12, 474, 10.1016/S0169-5347(97)01219-6 Legendre, 2014, Statistical methods for temporal and space–time analysis of community composition data, Proc. R. Soc. B, 281, 20132728, 10.1098/rspb.2013.2728 Maechler, 2013 Mason, 2005, Functional richness, functional evenness and functional divergence: the primary components of functional diversity, Oikos, 111, 112, 10.1111/j.0030-1299.2005.13886.x McLean, 2013, Height matters: position above the substratum influences the growth of two demosponge species, Mar. Ecol., 34, 122, 10.1111/j.1439-0485.2012.00523.x Menge, 1995, Indirect effects in marine rocky intertidal interaction webs: patterns and importance, Ecol. Monogr., 65, 21, 10.2307/2937158 Muntadas, 2016, Assessing functional redundancy in chronically trawled benthic communities, Ecol. Indic., 61, 882, 10.1016/j.ecolind.2015.10.041 Ortiz, 2002, Dynamical simulation of mass-balance trophic models for benthic communities of north-central Chile: assessment of resilience time under alternative management scenarios, Ecol. Model., 148, 277, 10.1016/S0304-3800(01)00454-9 Pavoine, 2005, Measuring diversity from dissimilarities with Rao's quadratic entropy: are any dissimilarities suitable?, Theor. Popul. Biol., 67, 231, 10.1016/j.tpb.2005.01.004 Pearson, 2001, Functional group ecology in soft-sediment marine benthos: the role of bioturbation, Oceanogr. Mar. Biol., 39, 233 Petchey, 2006, Functional diversity: back to basics and looking forward, Ecol. Lett., 9, 741, 10.1111/j.1461-0248.2006.00924.x Posey, 1987, Influence of relative mobilities on the composition of bentic communities, Mar. Ecol. Prog. Ser., 39, 99, 10.3354/meps039099 Reiss, 2003, Invertebrate associations with gastropod shells inhabited by Pagurus bernhardus (Paguridae) – secondary hard substrate increasing biodiversity in North Sea soft-bottom communities, Sarsia, 88, 404, 10.1080/00364820310003235 Retière, 1994, Tidal power and the aquatic environment of La Rance, Biol. J. Linn. Soc., 51, 25, 10.1111/j.1095-8312.1994.tb00941.x Robinson, 2010, Length–weight relationships of 216 North Sea benthic invertebrates and fish, J. Mar. Biol. Assoc. UK, 90, 95, 10.1017/S0025315409991408 Rosenfeld, 2002, Functional redundancy in ecology and conservation, Oikos, 98, 156, 10.1034/j.1600-0706.2002.980116.x Savage, 2004, Effects of body size and temperature on population growth, Am. Nat., 163, 429, 10.1086/381872 Scherer, 2016, Merging trait-based and individual-based modelling: an animal functional type approach to explore the responses of birds to climatic and land use changes in semi-arid African savannas, Ecol. Model., 326, 75, 10.1016/j.ecolmodel.2015.07.005 Sokal, 1958, A statistical method for evaluating systematic relationships, Univ. Kans Sci. Bull., 28, 1409 Srivastava, 2005, Biodiversity-ecosystem function research: is it relevant to conservation?, Annu Rev Ecol Evol S, 36, 267, 10.1146/annurev.ecolsys.36.102003.152636 Sutherland, 2013, Identification of 100 fundamental ecological questions, J. Ecol., 101, 58, 10.1111/1365-2745.12025 ter Braak, 2004, A theory of gradient analysis, Adv. Ecol. Res., 34, 235, 10.1016/S0065-2504(03)34003-6 Tilman, 1980, Resources: a graphical-mechanistic approach to competition and predation, Am. Nat., 116, 362, 10.1086/283633 Tilman, 1990, Constraints and tradeoffs: toward a predictive theory of competition and succession, Oikos, 58, 3, 10.2307/3565355 Törnroos, 2012, Developing the multitrait concept for functional diversity: lessons from a system rich in functions but poor in species, Ecol. Appl., 22, 2221, 10.1890/11-2042.1 Tyler, 2012, Extensive gaps and biases in our knowledge of a well-known fauna: implications for integrating biological traits into macroecology, Glob. Ecol. Biogeogr., 21, 922, 10.1111/j.1466-8238.2011.00726.x Ulanowicz, 2004, Quantitative methods for ecological network analysis, Comput. Biol. Chem., 28, 321, 10.1016/j.compbiolchem.2004.09.001 van der Linden, 2016, The performance of trait-based indices in an estuarine environment, Ecol. Indic., 61, 378, 10.1016/j.ecolind.2015.09.039 Walker, 1992, Biodiversity and ecological redundancy, Conserv. Biol., 6, 18, 10.1046/j.1523-1739.1992.610018.x Woodin, 1993, Allelochemical inhibition of recruitment in a sedimentary assemblage, J. Chem. Ecol., 19, 517, 10.1007/BF00994322 Yodzis, 1992, Body size and consumer-resource dynamics, Am. Nat., 139, 1151, 10.1086/285380