Biosecurity Implications of New Technology and Discovery in Plant Virus Research

PLoS Pathogens - Tập 9 Số 8 - Trang e1003337
Robin M. MacDiarmid1, Brendan Rodoni, Ulrich Melcher, Francisco M. Ochoa‐Corona, Marilyn J. Roossinck
1The New Zealand Institute for Plant and Food Research Limited, Auckland, New Zealand. [email protected]

Tóm tắt

Từ khóa


Tài liệu tham khảo

World Trade Organization (1995) Agreement on the Application of Sanitary and Phytosanitary Measures. In: Results of the Uruguay Round of Multilateral Trade Negotiations: The Legal Texts. Geneva, Switzerland: World Trade Organization. pp. 69–83.

Stack JP (2006) Challenges to crop biosecurity. In: Guillino ML, Fletcher J, Gamliel A, Stack JP, editors. Crop biosecurity: assuring our global food supply (NATO Science for peace and security series-C: environmental security). Dordrecht: Springer. pp. 15–23.

Fletcher J, Stack J (2007) Agricultural biosecurity: threats and impacts for plant pathogens. In: Forum on Microbial Threats, National Academy of Sciences, Institute of Medicine, editor. Global infectious disease surveillance and detection: assessing the challenges—finding solutions. Washington, D.C.: National Academies Press. pp. 86–94.

FM Ochoa-Corona, 2011, Biosecurity, microbial forensics and plant pathology: education challenges, overlapping disciplines and research needs, Australasian Plant Pathology, 40, 335, 10.1007/s13313-011-0052-z

MN Pearson, 2006, A review of the plant virus, viroid and mollicute records for New Zealand, Australasian Plant Pathology, 35, 217, 10.1071/AP06016

BSM Lebas, 2006, Control and monitoring: quarantine situation of Plum pox virus in New Zealand, Bulletin OEPP/EPPO Bulletin, 36, 296, 10.1111/j.1365-2338.2006.00999.x

BSM Lebas, 2007, First report of Spinach latent virus in tomato in New Zealand, Plant Disease, 91, 228, 10.1094/PDIS-91-2-0228A

BSM Lebas, 2009, Investigation of an outbreak of soil-borne wheat mosaic virus in New Zealand, Australasian Plant Pathology, 38, 85, 10.1071/AP08082

FM Ochoa Corona, 2007, New host records and new host family range for <italic>Turnip mosaic virus</italic> in New Zealand, Australasian Plant Disease Notes, 2, 127, 10.1071/DN07051

International Plant Protection Convention (2010) International Standards for Phytosanitary Measures (ISPM). Available: <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://www.ippc.int/index.php?id=13399" xlink:type="simple">www.ippc.int/index.php?id=13399</ext-link>. Accessed 23 March 2013.

B Rodoni, 2009, The role of plant biosecurity in preventing and controlling emerging plant virus disease epidemics, Virus Res, 141, 150, 10.1016/j.virusres.2008.11.019

S McKirdy, 2012, Microbial threat – a growing concern for plant biosecurity, Microbiology Australia, 33, 11, 10.1071/MA12012

Beale R, Fairbrother J, Inglis A, Trebeck D (2008) One biosecurity: a working partnership. The independent review of Australia&apos;s quarantine and biosecurity arrangements report to the Australian Government. Canberra: Commonwealth of Australia. 244 p.

Nairn ME, Allen PG, Inglis A, Tanner C (1996) Australian quarantine: a shared responsibility. Canberra: Department of Primary Industries and Energy.

J Handelsman, 2004, Metagenomics: application of genomics to uncultured microorganisms, Microbiol Mol Biol Rev, 68, 669, 10.1128/MMBR.68.4.669-685.2004

RA Edwards, 2005, Viral metagenomics, Nat Rev Microbiol, 3, 504, 10.1038/nrmicro1163

P Hugenholtz, 2008, Metagenomics, Nature, 455, 481, 10.1038/455481a

IP Adams, 2009, Next-generation sequencing and metagenomic analysis: a universal diagnostic tool in plant virology, Mol Plant Pathol, 10, 537, 10.1111/j.1364-3703.2009.00545.x

DM Kristensen, 2009, New dimensions of the virus world discovered through metagenomics, Trends Microbiol, 18, 11, 10.1016/j.tim.2009.11.003

JF Kreuze, 2009, Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: a generic method for diagnosis, discovery and sequencing of viruses, Virology, 388, 1, 10.1016/j.virol.2009.03.024

Q Wu, 2010, Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs, Proc Natl Acad Sci U S A, 107, 1606, 10.1073/pnas.0911353107

MJ Roossinck, 2010, Ecogenomics: using massively parallel pyrosequencing to understand virus ecology, Mol Ecol, 19, 81, 10.1111/j.1365-294X.2009.04470.x

JD Wren, 2006, Plant virus biodiversity and ecology, PLoS Biol, 4, e80, 10.1371/journal.pbio.0040080

S Sabanadzovic, 2010, A novel monopartite dsRNA virus from rhododendron, Arch Virol, 155, 1859, 10.1007/s00705-010-0770-5

MJ Roossinck, 2012, Plant virus metagenomics: biodiversity and ecology, Annu Rev Genet, 46, 357, 10.1146/annurev-genet-110711-155600

MJ Roossinck, 2011, The good viruses: viral mutualistic symbioses, Nat Rev Microbiol, 9, 99, 10.1038/nrmicro2491

P Xu, 2008, Virus infection improves drought tolerance. New Phytol 180: 911–21, Erratum in: New Phytol, 184, 275

CM Malmstrom, 2011, The expanding field of plant virus ecology: historical foundations, knowledge gaps, and research directions, Virus Res, 9, 84, 10.1016/j.virusres.2011.05.010

A Djikeng, 2009, Metagenomic analysis of RNA viruses in a fresh water lake, PLoS ONE, 4, e7264, 10.1371/journal.pone.0007264

K Scheets, 2011, Detection of members of the Tombusviridae in the Tallgrass Prairie Preserve, Osage County, Oklahoma USA, Virus Res, 160, 256, 10.1016/j.virusres.2011.06.023

New Zealand. Parliament. (1993) Biosecurity Act 1993. Public Act 1993 No. 95. 119 p.

Young N (2003) Tiakina Aotearoa protect New Zealand: the biosecurity strategy for New Zealand. Wellington: Biosecurity Council. 63 p. Available: <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://www.biosecurity.govt.nz/biosec/sys/strategy/biostrategy/biostrategynz" xlink:type="simple">www.biosecurity.govt.nz/biosec/sys/strategy/biostrategy/biostrategynz</ext-link>. Accessed 5 April 2013.

JH Kuhn, 2010, Clarification and guidance on the proper usage of virus and virus species names, Arch Virol, 155, 445, 10.1007/s00705-010-0600-9

MHV van Regenmortel, 2004, Emerging issues in virus taxonomy, Emerg Infect Dis, 10, 8, 10.3201/eid1001.030279

King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ, editors (2012) Virus taxonomy: ninth report of the International Committee on Taxonomy of Viruses. San Diego: Elsevier Academic Press. 1327 p.

J Dijkstra, 2002, The current naming of plant viruses: a critical appraisal, Arch Virol, 147, 2251, 10.1007/s007050200051

FE Angly, 2006, The marine viromes of four oceanic regions, PLoS Biol, 4, e368, 10.1371/journal.pbio.0040368

MH Van Regenmortel, 2010, A proposal to change existing virus species names to non-Latinized binomials, Arch Virol, 155, 1909, 10.1007/s00705-010-0831-9

L Bos, 2002, International naming of viruses - a digest of recent developments, Arch Virol, 147, 1471, 10.1007/s007050200044

AJ Gibbs, 2000, Virus nomenclature descending into chaos, Arch Virol, 145, 1505, 10.1007/s007050070108

JP Legg, 2004, Cassava mosaic geminiviruses in Africa, Plant Mol Biol, 56, 585, 10.1007/s11103-004-1651-7

MR Rojas, 2005, Exploiting chinks in the plant&apos;s armour: evolution and emergence of geminiviruses, Annu Rev Phytopathol, 4, 361, 10.1146/annurev.phyto.43.040204.135939

F Li, 2006, Virus counterdefense: diverse strategies for evading the RNA silencing immunity, Annu Rev Microbiol, 60, 503, 10.1146/annurev.micro.60.080805.142205

WJ Lucas, 2006, Plant viral movement proteins: agents for cell-to-cell trafficking of viral genomes, Virology, 344, 169, 10.1016/j.virol.2005.09.026

V Pallas, 2011, How do plant viruses induce disease? Interactions and interference with host components, J Gen Virol, 92, 2691, 10.1099/vir.0.034603-0

Committee on Scientific Milestones for the Development of a Gene-Sequence-Based Classification System for the Oversight of Select Agents (2010) Sequence-based classification of select agents: a brighter line. Washington, D.C.: National Academies Press. 234 p.

AJ Gibbs, 2008, The potyviruses of Australia, Arch Virol, 153, 1411, 10.1007/s00705-008-0134-6

MA Rúa, 2011, The role of viruses in biological invasions: friend or foe, Curr Opin Virol, 1, 68, 10.1016/j.coviro.2011.05.018

MJ Roossinck, 2011, The big unknown: plant virus biodiversity, Curr Opin Virol, 1, 63, 10.1016/j.coviro.2011.05.022