Biogeographic origin and radiation of the Old World crocidurine shrews (Mammalia: Soricidae) inferred from mitochondrial and nuclear genes

Alroy, 2003, Taxonomic inflation and body mass distributions in North American fossil mammals, J. Mammal., 84, 431, 10.1644/1545-1542(2003)084<0431:TIABMD>2.0.CO;2 Amer, 2005, Mitochondrial DNA sequences of the Afro-Arabian spiny-tailed lizards (genus Uromastyx; family Agamidae): phylogenetic analyses and evolution of gene arrangements, Biol. J. Linn. Soc., 85, 247, 10.1111/j.1095-8312.2005.00485.x Azzaroli, 1979, Terrestrial mammals and land connections in the Mediterranean before and during the Messinian, Palaeogeogr. Palaeocl., 29, 155, 10.1016/0031-0182(79)90079-8 Brändli, 2005, Evolutionary history of the greater white-toothed shrew (Crocidura russula) inferred from analysis of mtDNA, Y, and X chromosome markers, Mol. Phylogenet. Evol., 37, 832, 10.1016/j.ympev.2005.06.019 Butler, 1998, Fossil history of shrews in Africa, 121 Butler, 1979, Soricidae (Mammalia) from the Early Pleistocene of Olduvaï Gorge, Tanzania. Zool. J. Linn. Soc., 67, 329, 10.1111/j.1096-3642.1979.tb01119.x Butler, 1989, Interspecific relations of African crocidurine shrews (Mammalia: Soricidae) based on multivariate analysis of mandibular data, Zool. J. Linn. Soc., 96, 373, 10.1111/j.1096-3642.1989.tb02520.x Brummiti, 2002, How to chop up a tree, Taxon, 51, 31, 10.2307/1554961 Caujapé-Castells, 2003, The influence of the Miocene Mediterranean desiccation on the geographical expansion and genetic variation of Androcymbium gramineum (Cav.) McBride (Colchicaceae), Mol. Ecol., 12, 1515, 10.1046/j.1365-294X.2003.01839.x Chevret, P., 1994. Etude évolutive des Murinae (rongeurs: mammifères) africains par hybridation ADN/ADN: Comparaison avec les approches morphologiques et paléontologiques, Ph.D. dissertation, University of Montpellier II, Montpellier. Corbet, 1978 Cosson, 2005, Phylogeographic footprints of the Strait of Gibraltar and Quaternary climatic fluctuations in the western Mediterranean: a case study with the greater white-toothed shrew Crocidura russula (Mammalia: Soricidae), Mol. Ecol., 14, 1151, 10.1111/j.1365-294X.2005.02476.x De Menocal, 2004, African climate change and faunal evolution during the Pliocene-Pleistocene, Earth and Planetary Science Letters, 220, 3, 10.1016/S0012-821X(04)00003-2 Drummond, 2006, Relaxed Phylogenetics and dating with confidence, PLoS Biol., 4, e88, 10.1371/journal.pbio.0040088 Dubey, 2006, Pliocene and Pleistocene diversification and multiple refugia in a Eurasian shrew (Crocidura suaveolens group), Mol. Phylogenet. Evol., 38, 635, 10.1016/j.ympev.2005.11.005 Dubey, 2007, Use of phylogeny to resolve the taxonomy of the widespread and highly polymorphic African giant shrews (C. olivieri group, Crocidurinae, Mammalia), Zoology, 110, 48, 10.1016/j.zool.2006.05.003 Dubey, 2007, Mediterranean populations of the lesser white-toothed shrew (Crocidura suaveolens group): an unexpected puzzle of Pleistocene survivors and prehistoric introductions, Mol. Ecol., 16, 3438, 10.1111/j.1365-294X.2007.03396.x Dubey, 2007, Cytogenetic and molecular relationships between zarudny’s rock shrew, Crocidura zarudnyi (Mammalia: Soricomorpha) and Eurasian taxa, J. Mammal., 88, 706, 10.1644/05-MAMM-A-409R.1 Dubey, 2007, Molecular phylogenetics of Soricidae (Mammalia, Eulipotyphla) reveals timing of transcontinental colonizations, Mol. Phylogenet. Evol., 44, 126, 10.1016/j.ympev.2006.12.002 Fu, 1998, Toward the phylogeny of the family Lacertidae: implications from mitochondrial DNA 12S and 16S gene sequences (Reptilia: Squamata), Mol. Phylogenet. Evol., 9, 118, 10.1006/mpev.1997.0456 Guindon, 2003, A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood, Syst. Biol., 52, 692, 10.1080/10635150390235520 Harzhauser, 2002, Circum-Mediterranean Oligo-Miocene biogeographic evolution—the gastropods’ point of view, Palaeogeogr. Palaeocl., 183, 103, 10.1016/S0031-0182(01)00464-3 Huelsenbeck, 2001, Evolution: Bayesian inference of phylogeny and its impact on evolutionary biology, Science, 294, 2310, 10.1126/science.1065889 Hutterer, 2005, Order Soricomorpha, 220 Irwin, 1991, Evolution of the cytochrome b gene of Mammals, J. Mol. Evol., 32, 128, 10.1007/BF02515385 Jenkins, 1998, A biochemical and morphological investigation of Suncus dayi (Dobson, 1888) and discussion of relationships in Suncus Hemprich & Ehrenberg, 1899, Crocidura Wagler, 1832, and Sylvisorex Thomas, 1904 (Insectivora: Soricidae), Bonn. Zool. Beitr., 47, 257 Krijgsman, 1999, Chronology, causes and progression of the Messinian salinity crisis, Nature, 400, 652, 10.1038/23231 Lewis, 2001, A likelihood approach to estimating phylogeny from discrete morphological character data, Syst. Biol., 50, 913, 10.1080/106351501753462876 Maddalena, T., 1990a. Systématique, Evolution et Biogéographie des Musaraignes Afro-Tropicales et Paléartiques de la Sous-Famille des Crocidurinae: Une Approche Génétique. Ph.D. dissertation, University of Lausanne, Lausanne. Maddalena, 1990, Systematics and biogeography of Afrotropical and Palaeartic shrews of the genus Crocidura (Insectivora: Soricidae): an electrophoretic approach, Vertebr. Tropics, 297 Maddalena, 1992, Biological systematics of the endemic African genus Myosorex Gray, 1838 (Mammalia: Soricidae), Israel J. Zool., 38, 245 Maddalena, 1987, The Karyotype of Crocidura flavescens (Mammalia: Insectivora) in South-Africa, Z. Säugetierkd—Int. J. Mamm. Biol., 52, 129 Maddalena, T., Ruedi, M., 1994. Chromosomal evolution in the genus Crocidura (Soricidae, Insectivora). Special Publication of the Carnegie Museum of Natural History 18, 335–344. Maddison, W.P., Maddison, D.R., 2004. Mesquite: a modular system for evolutionary analysis. Version 1.06, http://mesquiteproject.org. McLellan, L.J., 1994. Evolution and phylogenetic affinities of the African species of Crocidura, Suncus and Sylvisorex (Insectivora: Soricidae). In: Merritt, J.F., Kirkland, G.L., Rose, R.K., (Eds.), Advances in the Biology of Shrews, Carnegie Museum of Natural History of Special Publication 18, 379–391. Meester, 1953, The genera of African shrews, Ann. Transvaal. Mus., 22, 205 Ohdachi, 2006, Molecular phylogenetics of soricid shrews (Mammalia) based on mitochondrial cytochrome b gene sequences: with special reference to the Soricinae, J. Zool., 270, 177, 10.1111/j.1469-7998.2006.00125.x Ohdachi, 2004, Molecular phylogenetics of Crocidura shrews (Insectivora) in east and central Asia, J. Mammal., 85, 396, 10.1644/1545-1542(2004)085<0396:MPOCSI>2.0.CO;2 Posada, 1998, MODELTEST: testing the model of DNA substitution, Bioinformatics, 14, 817, 10.1093/bioinformatics/14.9.817 Quérouil, 2001, Phylogeny and evolution of African shrews (Mammalia: Soricidae) inferred from 16s rRNA sequences, Mol. Phylogenet. Evol., 20, 185, 10.1006/mpev.2001.0974 Reumer, 1989, Speciation and evolution in the Soricidae (Mammalia: Insectivora) in relation with the paleoclimate, Rev. suisse Zool., 96, 81, 10.5962/bhl.part.117758 Reumer, J.W.F., 1994. Phylogeny and distribution of the Crocidosoricinae (Mammalia: Soricidae). In: Merritt, J.F., Kirkland, G.L., Rose, R.K., (Eds.), Advances in the Biology of Shrews, Carnegie Museum of Natural History of Special Publication, 18, 345–356. Rodriguez, 1990, The general stochastic model of nucleotide substitution, J. Theor. Bio., 142, 485, 10.1016/S0022-5193(05)80104-3 Rogl, 1998, Palaeogeographic considerations for Mediterranean and Paratethys seaways (Oligocene to Miocene), Ann. Naturhist. Mus. Wien, 99, 279 Ruedi, 1996, Phylogenetic evolution and biogeography of Southeast Asian shrews (genus Crocidura: Soricidae), Biol. J. Linnean Soc., 58, 197 Ruedi, 1998, Biogeography of Sulawesian shrews: testing for their origin with a parametric bootstrap on molecular data, Mol. Phylogenet. Evol., 9, 567, 10.1006/mpev.1998.0487 Rzebik-Kowalska, 1998, Fossil history of shrews in Europe, 23 Sanderson, 1997, A non parametric approach to estimating divergence times in the absence of rate constancy, Mol. Biol. Evol., 14, 1218, 10.1093/oxfordjournals.molbev.a025731 Sanderson, 2002, Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach, Mol. Biol. Evol., 19, 101, 10.1093/oxfordjournals.molbev.a003974 Storch, 1998, Fossil history of shrews in Asia, 93 Swofford, D.L., 2001. PAUP∗ 4.0: Phylogenetic analyses using Parsimony (∗and other methods). Beta version 4.0b10a for PC. Sinauer Associates, Inc., Publishers, Sunderland, Massachusetts. Thomas, 1982, Origine du peuplement mammalien en Afrique du Nord durant le Miocène terminal, Geobios, 15, 283, 10.1016/S0016-6995(82)80082-X Thompson, 1994, CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Res., 22, 4673, 10.1093/nar/22.22.4673 Thorne, J.L., Kishino, H., 2002. Divergence time and evolutionary rate estimation with multilocus data (http://statgen.ncsu.edu/thorne/multidivtime.html). Syst. Biol. 51, 689–702. Vogel, 2006, Habitat, morphology and karyotype of the Saharan shrew Crocidura tarfayaensis (Mammalia: Soricidae), Act. Theriol., 51, 353, 10.1007/BF03195182 Yang, 1996, Phylogenetic analysis using parsimony and likelihood methods, J. Mol. Evol., 42, 294, 10.1007/BF02198856