Bias and misleading concepts in an Arnica research study. Comments to improve experimental Homeopathy
Tài liệu tham khảo
Marzotto, 2016, Arnica montana stimulates extracellular matrix gene expression in a macrophage cell line differentiated to wound-healing phenotype, PLoS One, 11, e0166340, 10.1371/journal.pone.0166340
Staneva, 2011, Quantitative analysis of sesquiterpene lactones in extract of Arnica montana L. by 1H NMR spectroscopy, J Pharm Biomed Anal, 54, 94, 10.1016/j.jpba.2010.08.018
Gertsch, 2003, Influence of helenanolide-type sesquiterpene lactones on gene transcription profiles in Jurkat T cells and human peripheral blood cells: anti-inflammatory and cytotoxic effects, Biochem Pharmacol, 66, 2141, 10.1016/j.bcp.2003.08.006
Jakobs, 2016, Helenalin acetate, a natural sesquiterpene lactone with anti-inflammatory and anti-cancer activity, disrupts the cooperation of CCAAT-box/enhancer-binding protein beta (C/EBPβ) and co-activator p300, J Biol Chem, 291, 26098, 10.1074/jbc.M116.748129
Lyss, 1998, The anti-inflammatory sesquiterpene lactone helenalin inhibits the transcription factor NF-kappaB by directly targeting p65, J Biol Chem, 273, 33508, 10.1074/jbc.273.50.33508
Olioso, 2016, Arnica montana effects on gene expression in a human macrophage cell line. Evaluation by quantitative real-time PCR, Homeopathy, 105, 131, 10.1016/j.homp.2016.02.001
Marzotto, 2014, Extreme sensitivity of gene expression in human SH-SY5Y neurocytes to ultra-low doses of Gelsemium sempervirens, BMC Complement Altern Med, 14, 104, 10.1186/1472-6882-14-104
Magnani, 2010, Dose-effect study of Gelsemium sempervirens in high dilutions on anxiety-related responses in mice, Psychopharmacology (Berl), 210, 533, 10.1007/s00213-010-1855-2
Chirumbolo, 2016, Commentary: Arnica montana effects on gene expression in a human macrophage cell line: evaluation by quantitative real-time PCR, Front Immunol, 7, 280, 10.3389/fimmu.2016.00280
Chirumbolo, 2015, On Gelsemium and complementary and alternative medicine (CAM) in anxiety and experimental neurology, Neurol Ther, 4, 1, 10.1007/s40120-014-0025-6
Chirumbolo, 2012, Plant-derived extracts in the neuroscience of anxiety on animal models: biases and comments, Int J Neurosci, 122, 177, 10.3109/00207454.2011.635829
Verma, 2016, Alcohol stimulates macrophage activation through caspase-dependent hepatocyte derived release of CD40L containing extracellular vesicles, J Hepatol, 64, 651, 10.1016/j.jhep.2015.11.020
Chirumbolo, 2011, Gelsemine and Gelsemium sempervirens L. extracts in animal behavioral test: comments and related biases, Front Neurol, 2, 31, 10.3389/fneur.2011.00031
Chirumbolo, 2014, High diluted molecules and gene expression, Front Pharmacol, 5, 183, 10.3389/fphar.2014.00183
Bellavite, 2011, Gelsemium sempervirens and animal behavioral models, Front Neurol, 2, 56, 10.3389/fneur.2011.00056
Mary-Huard, 2007, Biases induced by pooling samples in microarray experiments, Bioinformatics, 23, i313, 10.1093/bioinformatics/btm182
Fasold, 2014, Variation of RNA quality and quantity are major sources of batch effects in microarray expression data, Microarrays (Basel), 3, 322, 10.3390/microarrays3040322
Zimmerman, 1993, Relative power of the Wilcoxon test, the Friedman test, and repeated measures ANOVA on ranks, J Exper Educ, 62, 75
Parekh, 2016, The impact of amplification on differential expression analyses by RNA-seq, Sci Rep, 6, 25533, 10.1038/srep25533
Rajkumar, 2015, Experimental validation of methods for differential gene expression analysis and sample pooling in RNA-seq, BMC Genomics, 16, 548, 10.1186/s12864-015-1767-y
Wang, 2014, The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance, Nat Biotechnol, 32, 926, 10.1038/nbt.3001
Yuan, 2015, Moderate ethanol administration accentuates cardiomyocyte contractile dysfunction and mitochondrial injury in high fat diet-induced obesity, Toxicol Lett, 233, 267, 10.1016/j.toxlet.2014.12.018
Cahill, 1999, Chronic ethanol consumption causes alterations in the structural integrity of mitochondrial DNA in aged rats, Hepatology, 30, 881, 10.1002/hep.510300434
Bolnick, 2014, Apoptosis of alcohol-exposed human placental cytotrophoblast cells is downstream of intracellular calcium signaling, Alcohol Clin Exp Res, 38, 1646, 10.1111/acer.12417
Guan, 2004, Oxidative stress and apoptosis in cardiomyocyte induced by high-dose alcohol, J Cardiovasc Pharmacol, 44, 696, 10.1097/00005344-200412000-00012
Zhang, 2016, Ethanol induces oxidative stress and apoptosis in human umbilical vein endothelial cells, Int J Clin Exp Med, 9, 4125
Rehman, 2013, Ethanol and vitamin D receptor in T cell apoptosis, J Neuroimmune Pharmacol, 8, 251, 10.1007/s11481-012-9393-9
Pourhoseingholi, 2012, How to control confounding effects by statistical analysis, Gastroenterol Hepatol Bed Bench, 5, 79
Chiba, 2009, The sign of the unmeasured confounding bias under various standard populations, Biom J, 51, 670, 10.1002/bimj.200800195
Süt, 2014, Study designs in medicine, Balk Med J, 31, 273, 10.5152/balkanmedj.2014.1408
Simonsen, 2004, Nanobubbles give evidence of incomplete wetting at a hydrophobic interface, J Colloid Interface Sci, 273, 291, 10.1016/j.jcis.2003.12.035
Yang, 2007, Characterization of nanobubbles on hydrophobic surfaces in water, Langmuir, 23, 7072, 10.1021/la070004i
Sedlák, 2013, Large-scale inhomogeneities in solutions of low molar mass compounds and mixtures of liquids: supramolecular structures or nanobubbles?, J Phys Chem B, 117, 2495, 10.1021/jp4002093
Filipe, 2010, Critical evaluation of Nanoparticle Tracking Analysis (NTA) by NanoSight for the measurement of nanoparticles and protein aggregates, Pharm Res, 27, 796, 10.1007/s11095-010-0073-2
Chan, 2012, Total internal reflection fluorescence microscopy for the study of nanobubble dynamics, Phys Rev Lett, 109, 174501, 10.1103/PhysRevLett.109.174501
Bunkin, 2016, Formation and dynamics of ion-stabilized gas nanobubble phase in the bulk of aqueous NaCl solutions, J Phys Chem B, 120, 1291, 10.1021/acs.jpcb.5b11103
Bunkin, 2012, Structure of the nanobubble clusters of dissolved air in liquid media, J Biol Phys, 38, 121, 10.1007/s10867-011-9242-8
Ushikubo, 2010, Zeta-potential of micro and/or nano-bubbles in water produced by some kind of gases, IFAC Proc Vol, 43, 283, 10.3182/20101206-3-JP-3009.00050
Ljunggren, 1997, The lifetime of a colloid-sized gas bubble in water and the cause of the hydrophobic attraction, Colloids Surf A Physicochem Eng Asp, 129, 151, 10.1016/S0927-7757(97)00033-2
Jin, 2007, Slow relaxation mode in mixtures of water and organic molecules: supramolecular structures or nanobubbles?, J Phys Chem B, 111, 2255, 10.1021/jp068665w
An, 2015, Surface nanobubbles in nonaqueous media: looking for nanobubbles in DMSO, formamide, propylene carbonate, ethylammonium nitrate and propylammonium nitrate, ACS Nano, 9, 7596, 10.1021/acsnano.5b02915
Soo, 2012, Nanoparticle tracking analysis monitors microvesicle and exosome secretion from immune cells, Immunology, 136, 192, 10.1111/j.1365-2567.2012.03569.x
Chikramane, 2012, Why extreme dilutions reach non-zero asymptotes: a nanoparticulate hypothesis based on froth flotation, Langmuir, 28, 15864, 10.1021/la303477s
Chirumbolo, 2015, Bias in homeopathy: technical notes Malays, J Med Biol Res, 2, 191
Pawitan, 2005, Bias in the estimation of false discovery rate in microarray studies, Bioinformatics, 21, 3865, 10.1093/bioinformatics/bti626
Liao, 2004, A mixture model for estimating the local false discovery rate in DNA microarray analysis, Bioinformatics, 20, 2694, 10.1093/bioinformatics/bth310
Mayo, 2006, Some statistical issues in microarray gene expression data, Radiat Res, 165, 745, 10.1667/RR3576.1
