Benzoic acid plays a part in rhizosphere microbial composition of peach seedlings grown in replanted soil

Ampe, 1996, Flux limitations in the ortho pathway of benzoate degradation of Alcaligenes eutrophus: metabolite overflow and induction of the meta pathway at high substrate concentrations, Microbiology, 142, 1807, 10.1099/13500872-142-7-1807 Baldrian, 2012, Active and total microbial communities in forest soil are largely different and highly stratified during decomposition, ISME J., 6, 248, 10.1038/ismej.2011.95 Ballhausen, 2016, The sapro-rhizosphere: carbon flow from saprotrophic fungi into fungus-feeding bacteria, Soil Biol. Biochem., 102, 14, 10.1016/j.soilbio.2016.06.014 Beat, 2016, Microbial diversity in European alpine permafrost and active layers, FEMS Microbiol. Ecol., 92, fiw018, 10.1093/femsec/fiw018 Benizri, 2005, Replant diseases: bacterial community structure and diversity in peach rhizosphere as determined by metabolic and genetic fingerprinting, Soil Biol. Biochem., 37, 1738, 10.1016/j.soilbio.2005.02.009 Bent, 2009, Investigations into peach seedling stunting caused by a replant soil, FEMS Microbiol. Ecol., 68, 192, 10.1111/j.1574-6941.2009.00668.x Briganti, 2000, Purification and catalytic properties of two catechol 1,2-dioxygenase isozymes from benzoate-grown cells of Acinetobacter radioresistens, J. Protein Chem., 19, 709, 10.1023/A:1007116703991 Buée, 2009, The rhizosphere zoo: an overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors, Plant Soil, 321, 189, 10.1007/s11104-009-9991-3 Burns, 2015, Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: differentiation by geographic features, Soil Biol. Biochem., 91, 232, 10.1016/j.soilbio.2015.09.002 Cao, 2008, Induction of ortho- and meta-cleavage pathways in Pseudomonas in biodegradation of high benzoate concentration: MS identification of catabolic enzymes, Appl. Microbiol. Biotechnol., 81, 99, 10.1007/s00253-008-1728-3 Chen, 2014, Isolation of Bacillus amyloliquefaciens S20 and its application in control of eggplant bacterial wilt, J. Environ. Manag., 137, 120, 10.1016/j.jenvman.2014.01.043 Cole, 2014, Ribosomal Database Project: data and tools for high throughput rRNA analysis, Nucleic Acids Res., 42, D633, 10.1093/nar/gkt1244 Denef, 2004, Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400, Appl. Environ. Microbiol., 70, 4961, 10.1128/AEM.70.8.4961-4970.2004 Edgar, 2013, UPARSE: highly accurate OTU sequences from microbial amplicon reads, Nat. Methods, 10, 996, 10.1038/nmeth.2604 Edwards, 2018, Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice, PLoS Biol., 16, 10.1371/journal.pbio.2003862 Eilers, 2010, Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil, Soil Biol. Biochem., 42, 896, 10.1016/j.soilbio.2010.02.003 Frankewhittle, 2015, Rhizosphere bacteria and fungi associated with plant growth in soils of three replanted apple orchards, Plant Soil, 395, 317, 10.1007/s11104-015-2562-x Gill, 1992, Cavity disease of Agaricus bitorquis caused by Pseudomonas cepacia, Can. J. Microbiol., 38, 394, 10.1139/m92-066 Gillis, 1995, Polyphasic taxonomy in the genus Burkholderia leading to an emended description of the genus and proposition of Burkholderia vietnamiensis sp. Nov. For N2-fixing isolates from rice in Vietnam, Int. J. Syst. Bacteriol., 45, 274, 10.1099/00207713-45-2-274 Goodall, 2013, Identification and expression analyses of cytosolic glutamine synthetase genes in barley (Hordeum vulgare L.), Plant Cell Physiol., 54, 492, 10.1093/pcp/pct006 Gul, 2015, Physico-chemical properties and microbial responses in biochar-amended soils: mechanisms and future directions, Agric. Ecosyst. Environ., 206, 46, 10.1016/j.agee.2015.03.015 He, 2019, Pseudomonas putida WH-B3 degrades benzoic acid and alleviates its autotoxicity to peach (Prunus persica L. Batsch) seedlings grown in replanted soil, Sci. Hortic., 255, 183, 10.1016/j.scienta.2019.05.020 Högberg, 2007, Is microbial community composition in boreal forest soils determined by pH, C-to-N ratio, the trees, or all three?, Oecologia, 150, 590, 10.1007/s00442-006-0562-5 Huang, 2019, A specialized metabolic network selectively modulates Arabidopsis root microbiota, Science, 364, 10.1126/science.aau6389 Illmer, 1992, Solubilization of inorganic phosphates by microorganisms isolated from forest soils, Soil Biol. Biochem., 24, 389, 10.1016/0038-0717(92)90199-8 Ishiyama, 2004, Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots, Plant Cell Physiol., 45, 1640, 10.1093/pcp/pch190 Israel, 1973, The toxicity of peach tree roots, Plant Soil, 39, 103, 10.1007/BF00018049 Jangid, 2008, Relative impacts of land-use, management intensity and fertilization upon soil microbial community structure in agricultural systems, Soil Biol. Biochem., 40, 2843, 10.1016/j.soilbio.2008.07.030 Janssen, 2006, Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes, Appl. Environ. Microbiol., 72, 1719, 10.1128/AEM.72.3.1719-1728.2006 Jiang, 2017, Microbial community analysis of apple rhizosphere around Bohai Gulf, Sci. Rep., 7, 8918, 10.1038/s41598-017-08398-9 Kemp, 2004, Bacterial diversity in aquatic and other environments: what 16S rDNA libraries can tell us, FEMS Microbiol. Ecol., 47, 161, 10.1016/S0168-6496(03)00257-5 Lakshmanan, 2014, Functional soil microbiome: belowground solutions to an aboveground problem, Plant Physiol., 166, 689, 10.1104/pp.114.245811 Lauber, 2009, Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale, Appl. Environ. Microbiol., 75, 5111, 10.1128/AEM.00335-09 Lauber, 2008, The influence of soil properties on the structure of bacterial and fungal communities across land-use types, Soil Biol. Biochem., 40, 2407, 10.1016/j.soilbio.2008.05.021 Li, 2010, Effect of monoculture soybean on soil microbial community in the Northeast China, Plant Soil, 330, 423, 10.1007/s11104-009-0216-6 Li, 2019, Soil sterilization leads to re-colonization of a healthier rhizosphere microbiome, Rhizosphere, 12, 100176, 10.1016/j.rhisph.2019.100176 Li, 2014, Fungal pathogen accumulation at the expense of plant-beneficial fungi as a consequence of consecutive peanut monoculturing, Soil Biol. Biochem., 72, 11, 10.1016/j.soilbio.2014.01.019 Liu, 2017, Effect of benzoic acid on soil microbial communities associated with soilborne peanut diseases, Appl. Soil Ecol., 110, 34, 10.1016/j.apsoil.2016.11.001 Lü, 2018, Mitigation of replant disease by mycorrhization in horticultural plants: a review, Folia Horticul., 30, 269, 10.2478/fhort-2018-0023 Manici, 2010, Soil fungal communities as indicators for replanting new peach orchards in intensively cultivated areas, Eur. J. Agron., 33, 188, 10.1016/j.eja.2010.05.005 Masella, 2012, PANDAseq: paired-end assembler for illumina sequences, BMC Bioinf., 13, 31, 10.1186/1471-2105-13-31 Mazzola, 2012, Apple replant disease: role of microbial ecology in cause and control, Annu. Rev. Phytopathol., 50, 45, 10.1146/annurev-phyto-081211-173005 Mcgill, 1981, Comparative aspects of cycling of organic C, N, S and P through soil organic matter, Geoderma, 26, 267, 10.1016/0016-7061(81)90024-0 Ortega-González, 2015, Evaluation of the removal of pyrene and fluoranthene by Ochrobactrum anthropi, Fusarium sp. and their coculture, Appl. Biochem. Biotechnol., 175, 1123, 10.1007/s12010-014-1336-x Papinutti, 2000, Enzymes of white rot fungi involved in lignin degradation, Rev. Argent. Microbiol., 32, 83 Park, 2001, Antimicrobial activity of phenol and benzoic acid derivatives, Int. Biodeterior. Biodegrad., 47, 209, 10.1016/S0964-8305(01)00058-0 Patrick, 1955, The peach replant problem in Ontario: II Toxic substances from microbial decomposition products of peach root residues, Can. J. Bot., 33, 461, 10.1139/b55-038 Pumphrey, 2008, Field-based stable isotope probing reveals the identities of benzoic acid-metabolizing microorganisms and their in situ growth in agricultural soil, Appl. Environ. Microbiol., 74, 4111, 10.1128/AEM.00464-08 Purahong, 2016, Life in leaf litter: novel insights into community dynamics of bacteria and fungi during litter decomposition, Mol. Ecol., 25, 4059, 10.1111/mec.13739 Raaijmakers, 2009, The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms, Plant Soil, 321, 341, 10.1007/s11104-008-9568-6 Rodrigo, 2011, Deciphering the rhizosphere microbiome for disease-suppressive bacteria, Science, 332, 1097, 10.1126/science.1203980 Rutto, 2006, Peach seedling growth in replant and non-replant soils after inoculation with arbuscular mycorrhizal fungi, Soil Biol. Biochem., 38, 2536, 10.1016/j.soilbio.2006.03.012 Saad, 2005, Simultaneous determination of preservatives (benzoic acid, sorbic acid, methylparaben and propylparaben) in foodstuffs using high-performance liquid chromatography, J. Chromatogr. A, 1073, 393, 10.1016/j.chroma.2004.10.105 Schadt, 2003, Seasonal dynamics of previously unknown fungal lineages in tundra soils, Science, 301, 1359, 10.1126/science.1086940 Sharma, 2013, Phosphate solubilizing microbes: sustainable approach for managing phosphorus deficiency in agricultural soils, SpringerPlus, 2, 587, 10.1186/2193-1801-2-587 Song, 2018, Composition and diversity of rhizosphere fungal community in Coptis chinensis Franch. continuous cropping fields, PloS One, 13 Spath, 2015, Linking soil biotic and abiotic factors to apple replant disease: a greenhouse approach, J. Phytopathol., 163, 287, 10.1111/jph.12318 Sun, 2015, Bacterial diversity in soils subjected to long-term chemical fertilization can be more stably maintained with the addition of livestock manure than wheat straw, Soil Biol. Biochem., 88, 9, 10.1016/j.soilbio.2015.05.007 Tan, 2013, Two Bacillus amyloliquefaciens strains isolated using the competitive tomato root enrichment method and their effects on suppressing Ralstonia solanacearum and promoting tomato plant growth, Crop Protect., 43, 134, 10.1016/j.cropro.2012.08.003 Tardy, 2015, Shifts in microbial diversity through land use intensity as drivers of carbon mineralization in soil, Soil Biol. Biochem., 90, 204, 10.1016/j.soilbio.2015.08.010 Tedersoo, 2014, Fungal biogeography. Global diversity and geography of soil fungi, Science, 346, 1256688, 10.1126/science.1256688 Tian, 2017, Land-use types and soil chemical properties influence soil microbial communities in the semiarid Loess Plateau region in China, Sci. Rep., 7, 45289, 10.1038/srep45289 Unterseher, 2013, Leaf-inhabiting endophytic fungi of European beech (Fagus sylvatica L.) co-occur in leaf litter but are rare on decaying wood of the same host, Fungal Divers., 60, 43, 10.1007/s13225-013-0222-0 Urbanová, 2015, Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees, Soil Biol. Biochem., 84, 53, 10.1016/j.soilbio.2015.02.011 Voges, 2019, Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome, Proc. Natl. Acad. Sci. U.S.A., 116, 12558, 10.1073/pnas.1820691116 Wagner, 2016, Host genotype and age shape the leaf and root microbiomes of a wild perennial plant, Nat. Commun., 7, 12151, 10.1038/ncomms12151 Wakelin, 2004, Phosphate solubilization by Penicillium spp. closely associated with wheat roots, Biol. Fertil. Soils, 40, 36, 10.1007/s00374-004-0750-6 Wang, 2018, Analysis of the fungal community in apple replanted soil around Bohai gulf, Hortic Plant J, 4, 175, 10.1016/j.hpj.2018.05.003 Wang, 2007, Naive bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy, Appl. Environ. Microbiol., 73, 5261, 10.1128/AEM.00062-07 Wang, 2017, Microbial community composition is related to soil biological and chemical properties and bacterial wilt outbreak, Sci. Rep., 7, 343, 10.1038/s41598-017-00472-6 Wensley, 1956, The peach replant problem in Ontario: IV. Fungi associated with replant failure and their importance in fumigated and nonfumigated soils, Can. J. Bot., 34, 967, 10.1139/b56-075 Williamson, 1988, Bioassays for allelopathy: measuring treatment responses with independent controls, J. Chem. Ecol., 14, 181, 10.1007/BF01022540 Winkelmann, 2019, Apple replant disease: causes and mitigation strategies, Curr. Issues Mol. Biol., 30, 89, 10.21775/cimb.030.089 Wu, 2016, Effects of consecutive monoculture of Pseudostellaria heterophyllaon soil fungal community as determined by pyrosequencing, Sci. Rep., 6, 26601, 10.1038/srep26601 Xiong, 2015, Different continuous cropping spans significantly affect microbial community membership and structure in a vanilla-grown soil as revealed by deep pyrosequencing, Microb. Ecol., 70, 209, 10.1007/s00248-014-0516-0 Yang, 2012, Correlations between root-associated microorganisms and peach replant disease symptoms in a California soil, PloS One, 7 Yang, 2016, Ammonia-oxidizing bacteria are more responsive than archaea to nitrogen source in an agricultural soil, Soil Biol. Biochem., 96, 4, 10.1016/j.soilbio.2016.01.012 Zhalnina, 2015, Soil pH determines microbial diversity and composition in the park grass experiment, Microb. Ecol., 69, 395, 10.1007/s00248-014-0530-2 Zhang, 2018, Root microbiota shift in rice correlates with resident time in the field and developmental stage, Sci. China Life Sci., 61, 613, 10.1007/s11427-018-9284-4 Zhu, 2017, Effects of phytotoxic extracts from peach root bark and benzoic acid on peach seedlings growth, photosynthesis, antioxidance and ultrastructure properties, Sci. Hortic., 215, 49, 10.1016/j.scienta.2016.12.004