Bases de données génomiques microbiennes

Annales de l'Institut Pasteur / Actualités - Tập 11 - Trang 85-103 - 2002
Ivan Moszer

Tài liệu tham khảo

Achard, 2001, XML, bioinformatics and data integration, Bioinformatics, 17, 115, 10.1093/bioinformatics/17.2.115 Apweiler, 2001, Technical comment to «Database verification studies of SWISS-PROT and GenBankå by Karp et al., Bioinformatics, 17, 533, 10.1093/bioinformatics/17.6.533 Bairoch, 2000, The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000, Nucleic Acids Res., 28, 45, 10.1093/nar/28.1.45 Bernhardt, 1999, Dual channel imaging of two-dimensional electropherograms in Bacillus subtilis, Electrophoresis, 20, 2225, 10.1002/(SICI)1522-2683(19990801)20:11<2225::AID-ELPS2225>3.0.CO;2-8 Biaudet, 1997, Micado: a network-oriented database for microbial genomes, Comput. Appl. Biosci., 13, 431 Bruccoleri, 1998, Concordance analysis of microbial genomes, Nucleic Acids Res., 26, 4482, 10.1093/nar/26.19.4482 Chervitz, 1999, Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure, Nucleic Acids Res., 27, 74, 10.1093/nar/27.1.74 Chetouani, 2001, FindTarget: software for subtractive genome analysis, Microbiology, 147, 2643, 10.1099/00221287-147-10-2643 Dandekar, 2000, Reannotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames, Nucleic Acids Res., 28, 3278, 10.1093/nar/28.17.3278 Demerec, 1968, A proposal for a uniform nomenclature in bacterial genetics, J. Gen. Microbiol., 50, 1, 10.1099/00221287-50-1-1 Frishman, 2001, Functional and structural genomics using Pedant, Bioinformatics, 17, 44, 10.1093/bioinformatics/17.1.44 Gardiner-Garden, 2001, A comparison of microarray databases, Brief. Bioinform., 2, 143, 10.1093/bib/2.2.143 Hodges, 1999, The Yeast Proteome Database (YPD): a model for the organization and presentation of genome-wide functional data, Nucleic Acids Res., 27, 69, 10.1093/nar/27.1.69 Ishii, 2001, DBTBS: a database of Bacillus subtilis promoters and transcription factors, Nucleic Acids Res., 29, 278, 10.1093/nar/29.1.278 Kanehisa, 2000, Kegg: Kyoto encyclopedia of genes and genomes, Nucleic Acids Res., 28, 27, 10.1093/nar/28.1.27 Karp, 2001, Database verification studies of SWISS-PROT and GenBank, Bioinformatics, 17, 526, 10.1093/bioinformatics/17.6.526 Karp, 2000, The EcoCyc and MetaCyc databases, Nucleic Acids Res., 28, 56, 10.1093/nar/28.1.56 Marc, 2001, yMGV: a database for visualization and data mining of published genome-wide yeast expression data, Nucleic Acids Res., 29, E63, 10.1093/nar/29.13.e63 Médigue, 1999, Imagene: an integrated computer environment for sequence annotation and analysis, Bioinformatics, 15, 2, 10.1093/bioinformatics/15.1.2 Médigue, 1999, Detecting and analyzing DNA sequencing errors: toward a higher quality of the Bacillus subtilis genome sequence, Genome Res., 9, 1116, 10.1101/gr.9.11.1116 Moszer, 1995, SubtiList: a relational database for the Bacillus subtilis genome, Microbiology, 141, 261, 10.1099/13500872-141-2-261 Moszer, 2002, SubtiList: the reference database for the Bacillus subtilis genome, Nucleic Acids Res., 30, 62, 10.1093/nar/30.1.62 Overbeek, 2000, WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction, Nucleic Acids Res., 28, 123, 10.1093/nar/28.1.123 Perrière, 2000, Hobacgen: database system for comparative genomics in bacteria, Genome Res., 10, 379, 10.1101/gr.10.3.379 Peterson, 2001, The comprehensive microbial resource, Nucleic Acids Res., 29, 123, 10.1093/nar/29.1.123 Ponting, 2001, Issues in predicting protein function from sequence, Brief. Bioinform., 2, 19, 10.1093/bib/2.1.19 Rudd, 2000, EcoGene: a genome sequence database for Escherichia coli K-12, Nucleic Acids Res., 28, 60, 10.1093/nar/28.1.60 Rutherford, 2000, Artemis: sequence visualization and annotation, Bioinformatics, 16, 944, 10.1093/bioinformatics/16.10.944 Salgado, 2001, RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12, Nucleic Acids Res., 29, 72, 10.1093/nar/29.1.72 Sazuka, 1999, Cyano2Dbase updated: linkage of 234 protein spots to corresponding genes through N-terminal microsequencing, Electrophoresis, 20, 2160, 10.1002/(SICI)1522-2683(19990801)20:11<2160::AID-ELPS2160>3.0.CO;2-# Serres, 2001, A functional update of the Escherichia coli K-12 genome, Genome Biol., 2, 351, 10.1186/gb-2001-2-9-research0035 Stevens, 2000, Ontology-based knowledge representation for bioinformatics, Brief. Bioinform., 1, 398, 10.1093/bib/1.4.398 Stevens, 2000, Wrapping and interoperating bioinformatics resources using Corba, Brief. Bioinform., 1, 9, 10.1093/bib/1.1.9 Tatusov, 2001, The COG database: new developments in phylogenetic classification of proteins from complete genomes, Nucleic Acids Res., 29, 22, 10.1093/nar/29.1.22 Van Bogelen, 1997, Escherichia coli proteome analysis using the gene-protein database, Electrophoresis, 18, 1243, 10.1002/elps.1150180805 Wittig, 2001, Analysis and comparison of metabolic pathway databases, Brief. Bioinform., 2, 126, 10.1093/bib/2.2.126