Bacteriophage in polar inland waters

Ackermann HW (2007) 5500 phages examined in the electron microscope. Arch Viriol 152:227–243 Anesio AM, Mindl B, Laybourn-Parry J, Hodson A, Sattler B (2007) Virus dynamics in cryoconite holes on a high Arctic glacier (Svalbard). J Geophys Res Biogeosci 112, G04531. doi: 10.1029/2006JG000350 Bettarel Y, Sime-Ngando T, Amblard C, Carrias J-F, Portelli C (2003) Virioplankton and microbial communities in aquatic systems: a seasonal study in two lakes of differing trophy. Freshw Biol 28:810–822 Borriss M, Helmke E, Hanschke R, Schweder T (2003) Isolation and characterization of marine psychrophilic phage-host systems from Arctic sea ice. Extremophiles 7:377–384 Bratbak G, Egge JK, Heldal M (1993) Viral mortality of the marine alga Emiliania huxleyi (Haptophyceae) and termination of algal blooms. Mar Ecol Prog Ser 93:39–48 Bratbak G, Heldal M, Thingstad TF, Riemann B, Haslund OH (1992) Incorporation of viruses into the budget of microbial C-transfer: a first approach. Mar Ecol Prog Ser 83:273–280 Cochran PK, Kellogg CA, Paul JP (1998) Prophage induction of indigenous marine lysogenic bacteria by environmental pollutants. Mar Ecol Prog Ser 164:125–133 Cochran PK, Paul JH (1998) Seasonal abundance of lysogenic bacteria in a sub-tropical estuary. Appl Environ Microbiol 64:2308–2312 Cole JJ, Carpenter SR, Kitchell JF, Pace ML (2002) Pathways of organic carbon utilization in small lakes: results from a whole-lake 13C addition and coupled model. Limnol Oceanogr 47:1664–1675 Dore JE, Priscu JC (2001) Phytoplankton phosphorus deficiency and alkaline phosphatase activity in the McMurdo Dry Valley lakes, Antarctica. Limnol Oceanogr 46:1331–1346 Fischer UR, Velimirov B (2002) High control of bacterial production by viruses in a eutrophic oxbow lake. Aquat Microbial Ecol 27:1–12 Gobler CJ, Hutchins DA, Fisher NS, Cosper EM, Sañudo-Wilhelmy SA (1997) Release and bioavailability of C, N, P, Se and Fe following viral lysis of a marine chrysophyte. Limnol Oceanogr 42:1492–1504 Granéli W, Bertilsson S, Philibert A (2004) Phosphorous limitation of bacterial growth in high Arctic lakes and ponds. Aquat Sci 66:430–439 Guixa-Boixereu N, Vaqué D, Gasol JM, Sánchez-Cámara J, Pedrós-Alió C (2002) Viral distribution and activity in Antarctic waters. Deep Sea Res II 49:827–845 Hewson I, O’Neil JM, Fuhrman JA, Dennison WC (2001) Virus-like particle distribution and abundance in sediments and overlying waters along eutrophication gradients in two subtropical estuaries. Limnol Oceaongr 46:1734–1746 Hobbie JE, Bahr M, Rublee PA (1999) Control on microbial food webs in oligotrophic arctic lakes. Arch Hydrobiol Spec Issue Adv Limnol 54:61 Hofer SJ, Sommaruga R (2001) Seasonal dynamics of viruses in an alpine lake: importance of filamentous forms. Aquat Microb Ecol 26:1–11 Jiang SC, Paul JH (1996) Occurrence of lysogenic bacteria in marine microbial communities as determined by prophage induction. Mar Ecol Prog Ser 142:27–38 Jiang SC, Paul JH (1998) Significance of lysogeny in the marine environment: studies with isolates and a model of lysogenic phage production. Microb Ecol 35:235–243 Karr EA, Ng JM, Belchik SM, Sattley WM, Madigan MT, Achenbach LA (2006) Biodiversity of methanogenic and other Archaea in the permanently frozen lake Fryxell, Antarctica. Appl Environ Microbiol 72:1663–1666 Kepner RL, Wharton RA, Suttle CA (1998) Viruses in Antarctic lakes. Limnol Oceanogr 43:1754–1761 Laybourn-Parry J (1997) The microbial loop in Antarctic lakes. In: Howard-Williams C, Lyons WB, Hawes I (eds) Ecosystem processes in Antarctic ice-free landscapes. A.A. Balkema/Rotterdam/Brookfield, Rotterdam, pp 231–240 Laybourn-Parry J (2002) Survival strategies in Antarctic lakes. Phil Trans R Soc B 357:863–869 Laybourn-Parry J, Madan NJ, Marshall WA, Marchant HJ, Wright SW (2006) Carbon dynamics in an ultra-oligotrophic epishelf lake (Beaver Lake, Antarctica) in summer. Freshw Biol 51:1116–1130 Laybourn-Parry J, Marshall WA, Madan NJ (2007) Viral dynamics and patterns of lysogeny in saline Antarctic lakes. Polar Biol 30:351–358 Lisle JT, Priscu JC (2004) The occurrence of lysogenic bacteria and microbial aggregates in the lakes of the McMurdo Dry valleys, Antarctica. Microb Ecol 47:427–439 Lymer D, Vrede K (2006) Nutrient additions resulting in phage release and formation of non-nucleoid-containing bacteria. Aquat Microb Ecol 43:107–112 Madan NJ, Marshall WA, Laybourn-Parry J (2005) Virus and microbial loop dynamics over and annual cycle in three contrasting Antarctic lakes. Freshw Biol 50:1291–1300 Maranger R, Bird AF (1995) Viral abundance in aquatic systems: a comparison between marine and freshwaters. Mar Ecol Prog Ser 121:217–226 Mei ML, Danovaro R (2004) Virus production and life strategies in aquatic sediments. Limnol Oceanogr 49:459–470 Middelboe M, Lyck PG (2002) Regeneration of dissolved organic matter by viral lysis in marine microbial communities. Aquat Microb Ecol 27:187–194 Middelboe M, Jørgensen NOG, Kroer N (1996) Effects of viruses on nutrient turnover and growth efficiency of noninfected marine bacterioplankton. Appl Environ Microbiol 62:1991–1997 Miller ES, Heidelberg JF, Eisen JA, Nelson WC, Durkin AS, Ciecko A, Feldblyum TV, White O, Paulsen IT, Nierman WC, Lee J, Szczypinski B, Fraser CM (2003) Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4 related bacteriophage. J Bacteriol 185:5220–5233 Murray AG, Eldridge PM (1994) Marine viral ecology: incorporation of bacteriophage into the microbial planktonic food web paradigm. J Plankton Res 16:627–641 Nagasaki K, Tomaru Y, Katanozaka N, Shirai Y, Nishida K, Itakura S, Yamaguchi M (2004) Isolation and charaterization of a novel single-stranded RNA virus infecting the bloom-forming diatom Rhizosolenia setigera. Appl Environ Microbiol 70:704–711 Nagasaki K, Tomaru Y, Takao Y, Nishida K, Shirai Y, Suzuki H, Nagumo T (2005) Previously unknown virus infects marine diatom. Appl Environ Microbiol 71:3528–3535 Noble RT, Fuhrman JA (1997) Viral decay and its causes in coastal waters. Appl Environ Microbiol 63:77–83 Noble RT, Steward GF (2001) Estimating viral proliferation in aquatic samples. In: Paul JH (ed) Marine microbiology—methods in microbiology. Academic, London, pp 67–82 Ortman A, Lawrence J, Suttle C (2002) Lysogeny and lytic viral production during a bloom of the cyanobacterium Synechococcus spp. Microb Ecol 43:225–231 Paul JH, Kellogg CA (1998) The ecology of bacteriophages in nature. In: Hurst CJ (ed) Viral ecology. Academic, San Diego, pp 211–247 Paul JH, Jiang SC (2001) Lysogeny and transduction. In: Paul JH (ed) Marine microbiology—methods in microbiology. Academic, London, pp 105–125 Prangishvili D, Forterre P, Garrett RA (2006) View of the Archaea; a unifying view. Nat Rev Microbiol 4:837–848 Priscu JC, Bell RE, Bulat SA, Ellis-Evans JC, Lukin VV, Petit J-R, Powell RD, Siegert MJ, Tabacco I (2003) An international plan for Antarctic subglacial lake exploration. Polar Geog 27:69–83 Priscu JC, Wolf CF, Takacs CD, Fritsen CH, Laybourn-Parry J, Roberts EC, Lyons WB (1999) Carbon transformations in the water column of a perennially ice-covered Antarctic Lake. Bioscience 49:997–1008 Rohwer F, Segall A, Steward G, Seguritan V, Breitbart M, Wolven F, Azam F (2000) The complete genomic sequence of the marine phage Roseophage SI01 shares homology with non-marine phages. Limnol Oceanogr 45:408–418 Sano E, Carlsson S, Wegley L, Rohwer F (2004) Movement of viruses between biomes. Appl Environ Microbiol 70:5842–5846 Säwström C, Mumford P, Marshall WA, Hodson A, Laybourn-Parry J (2002) The microbial communities and primary productivity of cryoconite holes in and Arctic glacier (Svalbard 79°N). Polar Biol 25:591–596 Säwström C, Anesio AM, Granéli W, Laybourn-Parry J (2007a) Seasonal viral loop dynamics in two large ultra-oligotrophic Antarctic freshwater lakes. Microb Ecol 53:1–11 Säwström C, Granéli W, Laybourn-Parry J, Anesio AM (2007b) High viral infection rates in Antarctic and Arctic bacterioplankton. Environ Microbiol 9:250–255 Säwström C, Laybourn-Parry J, Granéli W, Anesio AM (2007c) Heterotrophic bacterial and viral dynamics in Arctic freshwaters: results from a field study and nutrient-temperature manipulation experiments. Polar Biol 30:1407–1415 Säwström C, Pearce I, Davidson AT, Rosén P, Laybourn-Parry J (2008) The influence of environmental conditions, bacterial activity and viability on the viral component in ten Antarctic lakes. FEMS Microbiol Ecol 63:12–22 Steward GF, Wickner J, Cochlan WP, Smith DC, Azam F (1992) Estimation of virus production in the sea: I. Method development. Mar Microb Food Webs 6:57–78 Suttle CA, Chen F (1992) Mechanisms and rates of decay of marine viruses in seawater. Appl Environ Microbiol 58:3721–3729 Tapper MA, Hick RE (1998) Temperate viruses and lysogeny in Lake Superior bacterioplankton. Limnol Oceanogr 43:95–103 Van Etten JL, Lane LC, Meints RH (1991) Viruses and virus like particles of eukaryotic algae. Microbiol Rev 55:586–620 Van Etten JL, Graves MV, Mueller DG, Boland WW, Delaroque N (2002) Phycodnaviridae-large DNA algal viruses. Arch Virol 147:1479–1516 Vincent WF, Rae R, Laurion I, Howard-Williams C, Priscu JC (1997) Transparency of Antarctic ice-covered lakes to solar UV radiation. Limnol Oceanogr 43:618–624 Weinbauer MG (2004) Ecology of prokaryotic viruses. FEMS Microbiol Rev 28:127–181 Weinbauer MG, Brettar I, Höfle M (2003) Lysogeny and virus-induced mortality of bacterioplankton in surface, deep and anoxic waters. Limnol Oceanogr 48:1457–1465 Weinbauer MG, Höfle MG (1998) Significance of viral lysis and flagellate grazing as factors controlling bacterioplankton production in a Eutrophic lake. Appl Environ Microbiol 64:431–438 Weinbauer MG, Suttle CA (1996) Potential significance of lysogeny to bacteriophage production and bacterial mortality in coastal waters of the Gulf of Mexico. Appl Environ Microbiol 62:4374–4380 Weinbauer MG, Suttle CA (1999) Lysogeny and prophage induction in coastal and offshore bacterial communities. Aquat Microb Ecol 18:217–225 Wichels A, Biel SS, Gelderblom HR, Brinkhoff T, Muyzer G, Schutt C (1998) Bacteriophage diversity in the North Sea. Appl Environ Microbiol 64:4128–4133 Wilhelm SW, Weinbauer MG, Suttle CA, Jeffrey WH (1998) The role of sunlight in the removal and repair of viruses in the sea. Limnol Oceanogr 43:586–592 Wilhelm SW, Brigden SM, Suttle CA (2002) A dilution technique for the direct measurement of viral production: a comparison in stratified and tidally mixed coastal waters. Microb Ecol 43:168–173 Williamson SJ, Houchin LA, McDaniel L, Paul JH (2002) Seasonal variation inlysogeny as depicted by prophage induction in Tampa Bay, Florida. Appl Environ Microbiol 68:4307–4314 Wilson WH, Lane D, Pearce DA, Ellis-Evans JC (2000) Transmission electron microscope analysis of virus-like particles in the freshwater lakes of Signy Island, Antarctica. Polar Biol 23:657–660 Wilson WH, Mann NH (1997) Lysogenic and lytic viral production in marine microbial communities. Aquat Microb Ecol 13:95–100 Wommack KE, Colwell RR (2000) Virioplankton: viruses in aquatic ecosystems. Microbiol Mol Biol Rev 64:69–114 Wommack KE, Hill RT, Muller TA, Colwell RR (1996) Effects of sunlight on bacteriophage viability and structure. Appl Environ Microbiol 62:1336–1341