Bacterial social interactions and the emergence of community-intrinsic properties
Tài liệu tham khảo
Faust, 2012, Microbial interactions: from networks to models, Nat Rev Microbiol, 10, 538, 10.1038/nrmicro2832
Rivett, 2016, Resource-dependent attenuation of species interactions during bacterial succession, ISME J, 10, 2259, 10.1038/ismej.2016.11
Parsek, 2005, Sociomicrobiology: the connections between quorum sensing and biofilms, Trends Microbiol, 13, 27, 10.1016/j.tim.2004.11.007
Xavier, 2016, Sociomicrobiology and pathogenic bacteria, Microbiol Spectr, 4, 10.1128/microbiolspec.VMBF-0019-2015
Røder, 2016, Studying bacterial multispecies biofilms: where to start?, Trends Microbiol, 24, 503, 10.1016/j.tim.2016.02.019
Tan, 2017, All together now: experimental multispecies biofilm model systems, Environ Microbiol, 19, 42, 10.1111/1462-2920.13594
Flemming, 2016, Biofilms: an emergent form of bacterial life, Nat Rev Microbiol, 14, 563, 10.1038/nrmicro.2016.94
Friman, 2016, Relative importance of evolutionary dynamics depends on the composition of microbial predator–prey community, ISME J, 10, 1352, 10.1038/ismej.2015.217
Konopka, 2009, What is microbial community ecology?, ISME J, 3, 1223, 10.1038/ismej.2009.88
Lindemann, 2016, Engineering microbial consortia for controllable outputs, ISME J, 10, 2077, 10.1038/ismej.2016.26
Lusseau, 2003, The emergent properties of a dolphin social network, Proc Biol Sci, 270, S186
Mattia, 2015, Supramolecular systems chemistry, Nat Nanotechnol, 10, 111, 10.1038/nnano.2014.337
Kallus, 2017, Paradoxes in leaky microbial trade, Nat Commun, 8, 1361, 10.1038/s41467-017-01628-8
Fussmann, 2002, Food web complexity and chaotic population dynamics, Ecol Lett, 5, 394, 10.1046/j.1461-0248.2002.00329.x
Foster, 2012, Competition, not cooperation, dominates interactions among culturable microbial species, Curr Biol, 22, 1845, 10.1016/j.cub.2012.08.005
Madsen, 2016, Coexistence facilitates interspecific biofilm formation in complex microbial communities, Environ Microbiol, 47, 2565, 10.1111/1462-2920.13335
Mitri, 2013, The genotypic view of social interactions in microbial communities, Annu Rev Genet, 47, 247, 10.1146/annurev-genet-111212-133307
Dethlefsen, 2006, Assembly of the human intestinal microbiota, Trends Ecol Evol, 21, 517, 10.1016/j.tree.2006.06.013
Coyte, 2015, The ecology of the microbiome: networks, competition, and stability, Science, 350, 663, 10.1126/science.aad2602
Tucker, 2014, Environmental variability counteracts priority effects to facilitate species coexistence: evidence from nectar microbes, Proc Biol Sci, 281, 20132637
Faust, 2012, Microbial co-occurrence relationships in the human microbiome, PLoS Comput Biol, 8, e1002606, 10.1371/journal.pcbi.1002606
Layeghifard, 2017, Disentangling interactions in the microbiome: a network perspective, Trends Microbiol, 25, 217, 10.1016/j.tim.2016.11.008
Shi, 2016, The interconnected rhizosphere: high network complexity dominates rhizosphere assemblages, Ecol Lett, 19, 926, 10.1111/ele.12630
Friedman, 2017, Community structure follows simple assembly rules in microbial microcosms, Nat Ecol Evol, 1, 109, 10.1038/s41559-017-0109
Røder, 2015, Interspecies interactions result in enhanced biofilm formation by co-cultures of bacteria isolated from a food processing environment, Food Microbiol, 51, 18, 10.1016/j.fm.2015.04.008
Ren, 2015, High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation, ISME J, 9, 81, 10.1038/ismej.2014.96
Hansen, 2017, Distinct gene expression profile of Xanthomonas retroflexus engaged in synergistic multispecies biofilm formation, ISME J, 11, 300, 10.1038/ismej.2016.107
Liu, 2016, Interspecific bacterial interactions are reflected in multispecies biofilm spatial organization, Front Microbiol, 7, 1366, 10.3389/fmicb.2016.01366
Liu, 2017, Low-abundant species facilitates specific spatial organization that promotes multispecies biofilm formation, Environ Microbiol, 19, 2893, 10.1111/1462-2920.13816
Burmølle, 2006, Enhanced biofilm formation and increased resistance towards antimicrobial agents and bacterial invasion are caused by synergistic interactions in multispecies biofilms, Appl Environ Microbiol, 72, 3916, 10.1128/AEM.03022-05
Lee, 2014, Biofilm development and enhanced stress resistance of a model, mixed-species community biofilm, ISME J, 8, 894, 10.1038/ismej.2013.194
Peters, 2012, Polymicrobial interactions: impact on pathogenesis and human disease, Clin Microbiol Rev, 25, 193, 10.1128/CMR.00013-11
Burmolle, 2014, Interactions in multispecies biofilms: do they actually matter?, Trends Microbiol, 22, 84, 10.1016/j.tim.2013.12.004
Bachmann, 2016, Public goods and metabolic strategies, Curr Opin Microbiol, 31, 109, 10.1016/j.mib.2016.03.007
Lee, 2016, Interspecific diversity reduces and functionally substitutes for intraspecific variation in biofilm communities, ISME J, 10, 846, 10.1038/ismej.2015.159
Tyc, 2014, Impact of interspecific interactions on antimicrobial activity among soil bacteria, Front Microbiol, 5, 567, 10.3389/fmicb.2014.00567
Smith, 2017, Albumin inhibits Pseudomonas aeruginosa quorum sensing and alters polymicrobial interactions, Infect Immun, 85
Harrison, 2006, Cooperation and virulence in acute Pseudomonas aeruginosa infections, BMC Biol, 4, 21, 10.1186/1741-7007-4-21
Pande, 2014, Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria, ISME J, 8, 953, 10.1038/ismej.2013.211
Pande, 2016, Privatization of cooperative benefits stabilizes mutualistic cross-feeding interactions in spatially structured environments, ISME J, 10, 1413, 10.1038/ismej.2015.212
Katharios-Lanwermeyer, 2014, Mini-review: microbial coaggregation: ubiquity and implications for biofilm development, Biofouling, 30, 1235, 10.1080/08927014.2014.976206
Mark Welch, 2016, Biogeography of a human oral microbiome at the micron scale, Proc Natl Acad Sci U S A, 113, E791, 10.1073/pnas.1522149113