Bacteria are more sensitive than fungi to soil fertility in an intensive vegetable field
Tài liệu tham khảo
Barberan, 2012, Using network analysis to explore co-occurrence patterns in soil microbial communities, ISME J., 6, 343, 10.1038/ismej.2011.119
Bian, 2022, Exogenous substrate quality determines the dominant keystone taxa linked to carbon mineralization: evidence from a 30-year experiment, Soil Biol. Biochem., 169, 10.1016/j.soilbio.2022.108683
Chen, 2016, Microbial communities of an arable soil treated for 8 years with organic and inorganic fertilizers, Biol. Fertility Soils, 52, 455, 10.1007/s00374-016-1089-5
Chen, 2021, Metabolic flexibility allows bacterial habitat generalists to become dominant in a frequently disturbed ecosystem, ISME J., 15, 2986, 10.1038/s41396-021-00988-w
Clauset, 2004, Finding community structure in very large networks, Phys. Rev. E, 70, 66111, 10.1103/PhysRevE.70.066111
Csardi, 2006, The igraph software package for complex network research, Int. J. Comp. Sys., 1695, 1
Curlevski, 2010, Converting Australian tropical rainforest to native Araucariaceae plantations alters soil fungal communities, Soil Biol. Biochem., 42, 14, 10.1016/j.soilbio.2009.08.001
De Cáceres, 2010, Improving indicator species analysis by combining groups of sites, Oikos, 119, 1674, 10.1111/j.1600-0706.2010.18334.x
De Keersmaecker, 2016, Species-rich semi-natural grasslands have a higher resistance but a lower resilience than intensively managed agricultural grasslands in response to climate anomalies, J. Appl. Ecol., 53, 430, 10.1111/1365-2664.12595
Deacon, 2006, Diversity and function of decomposer fungi from a grassland soil, Soil Biol. Biochem., 38, 7, 10.1016/j.soilbio.2005.04.013
Delgado-Baquerizo, 2016, Microbial diversity drives multifunctionality in terrestrial ecosystems, Nat. Commun., 7, 10541, 10.1038/ncomms10541
Delgado-Baquerizo, 2017, Circular linkages between soil biodiversity, fertility and plant productivity are limited to topsoil at the continental scale, New Phytol., 215, 1186, 10.1111/nph.14634
Ding, 2016, Effect of 35 years inorganic fertilizer and manure amendment on structure of bacterial and archaeal communities in black soil of Northeast China, Appl. Soil Ecol., 105, 187, 10.1016/j.apsoil.2016.04.010
Dini-Andreote, 2015, Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession, P. Natl Acad. Sci. USA, 112, E1326, 10.1073/pnas.1414261112
Du, 2020, Effects of manure fertilizer on crop yield and soil properties in China: a meta-analysis, Catena, 193, 10.1016/j.catena.2020.104617
Fierer, 2007, Toward an ecological classification of soil bacteria, Ecology, 88, 1354, 10.1890/05-1839
Guo, 2018, Bacterial rather than fungal community composition is associated with microbial activities and nutrient-use efficiencies in a paddy soil with short-term organic amendments, Plant Soil, 424, 335, 10.1007/s11104-017-3547-8
Guo, 2020, Soil fungal assemblage complexity is dependent on soil fertility and dominated by deterministic processes, New Phytol., 226, 232, 10.1111/nph.16345
Han, 2021, Chemical fertilizer reduction with organic fertilizer effectively improve soil fertility and microbial community from newly cultivated land in the loess plateau of China, Appl. Soil Ecol., 165, 10.1016/j.apsoil.2021.103966
Hansen, 2013, A phylogeny of the highly diverse cup-fungus family Pyronemataceae (Pezizomycetes, Ascomycota) clarifies relationships and evolution of selected life history traits, Mol. Phylogen. Evol., 67, 311, 10.1016/j.ympev.2013.01.014
Hartman, 2018, Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming, Microbiome, 6, 14, 10.1186/s40168-017-0389-9
Jetten, 2001, Microbiology and application of the anaerobic ammonium oxidation ('anammox') process, Curr. Opin. Biotechnol., 12, 283, 10.1016/S0958-1669(00)00211-1
Jiao, 2020, Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China, ISME J., 14, 202, 10.1038/s41396-019-0522-9
Kyaschenko, 2017, Below-ground organic matter accumulation along a boreal forest fertility gradient relates to guild interaction within fungal communities, Ecol. Lett., 20, 1546, 10.1111/ele.12862
Larsen, 2022, Distinct and temporally stable assembly mechanisms shape bacterial and fungal communities in vineyard soils, Microb. Ecol., 14, 1
Li, 2021, Evaluating microbial role in reducing N2O emission by dual isotopocule mapping following substitution of inorganic fertilizer for organic fertilizer, J. Clean. Prod., 326, 10.1016/j.jclepro.2021.129442
Ling, 2016, Insight into how organic amendments can shape the soil microbiome in long-term field experiments as revealed by network analysis, Soil Biol. Biochem., 99, 137, 10.1016/j.soilbio.2016.05.005
Liu, 2021, Combined applications of organic and synthetic nitrogen fertilizers for improving crop yield and reducing reactive nitrogen losses from China’s vegetable systems: a meta-analysis, Environ. Pollut., 269, 10.1016/j.envpol.2020.116143
Liu, 2020, Dynamic microbial assembly processes correspond to soil fertility in sustainable paddy agroecosystems, Funct. Ecol., 34, 1244, 10.1111/1365-2435.13550
Luo, 2022, Long-term organic fertilization promotes the resilience of soil multifunctionality driven by bacterial communities, Soil Biol. Biochem., 177
Miao, 2011, Long-term experiments for sustainable nutrient management in China, A review. Agron. Sustain. Dev., 31, 397, 10.1051/agro/2010034
National Bureau of Statistics of the People'’s Republic of China (NBS), 2020
Nemergut, 2013, Patterns and processes of microbial community assembly, Microbiol. Mol. Biol. Rev., 77, 342, 10.1128/MMBR.00051-12
Ning, 2020, Multiple long-term observations reveal a strategy for soil pH-dependent fertilization and fungal communities in support of agricultural production, Agric. Ecosyst. Environ., 293, 10.1016/j.agee.2020.106837
Pan, 2020, Organic and inorganic fertilizers respectively drive bacterial and fungal community compositions in a fluvo-aquic soil in northern China, Soil Till. Res., 198, 10.1016/j.still.2019.104540
Powell, 2015, Deterministic processes vary during community assembly for ecologically dissimilar taxa, Nat. Commun., 6, 8444, 10.1038/ncomms9444
Qi, 2009, Evaluating soil quality indices in an agricultural region of Jiangsu Province, China, Geoderma, 149, 325, 10.1016/j.geoderma.2008.12.015
Robinson, 2010, edgeR: a bioconductor package for differential expression analysis of digital gene expression data, Bioinformatics, 26, 139, 10.1093/bioinformatics/btp616
Rousk, 2007, Fungal biomass production and turnover in soil estimated using the acetate-in-ergosterol technique, Soil Biol. Biochem., 39, 2173, 10.1016/j.soilbio.2007.03.023
Shen, 2022, Linkages of nitrogen-cycling microbial resistance and resilience to soil nutrient stoichiometry under dry-rewetting cycles with different fertilizations and temperatures in a vegetable field, Sci. Total Environ., 820, 10.1016/j.scitotenv.2022.153294
Shi, 2020, Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems, Environ. Int., 142, 10.1016/j.envint.2020.105869
Stegen, 2012, Stochastic and deterministic assembly processes in subsurface microbial communities, ISME J., 6, 1653, 10.1038/ismej.2012.22
Sun, 2016, Fungal community composition in soils subjected to long-term chemical fertilization is most influenced by the type of organic matter, Environ. Microbiol., 18, 5137, 10.1111/1462-2920.13512
Wang, 2020, Mechanisms of soil bacterial and fungal community assembly differ among and within islands, Environ. Microbiol., 22, 1559, 10.1111/1462-2920.14864
Wickham, 2016
Wu, 2022, Chemical fertilizer reduction with organic material amendments alters co-occurrence network patterns of bacterium-fungus-nematode communities under the wheat-maize rotation regime, Plant Soil, 473, 605, 10.1007/s11104-022-05314-7
Xu, 2010
Xu, 2012, Soil fungal community structure along a soil health gradient in pea fields examined using deep amplicon sequencing, Soil Biol. Biochem., 46, 26, 10.1016/j.soilbio.2011.11.010
Yu, 2019, Responses of paddy soil bacterial community assembly to different long-term fertilizations in Southeast China, Sci. Total Environ., 656, 625, 10.1016/j.scitotenv.2018.11.359
Zhang, 2021, Dispersal limitation plays stronger role in the community assembly of fungi relative to bacteria in rhizosphere across the arable area of medicinal plant, Front.Microbiol., 12
Zhang, 2022, Wheat yellow mosaic enhances bacterial deterministic processes in a plant-soil system, Sci. Total Environ., 812, 10.1016/j.scitotenv.2021.151430
Zhang, 2021, The stronger impact of inorganic nitrogen fertilization on soil bacterial community than organic fertilization in short-term condition, Geoderma, 382, 10.1016/j.geoderma.2020.114752
Zhou, 2014, Stochasticity, succession, and environmental perturbations in a fluidic ecosystem, P. Natl Acad. Sci. USA, 111, E836, 10.1073/pnas.1324044111
Zhou, 2019, Organic-substitute strategies reduced carbon and reactive nitrogen footprints and gained net ecosystem economic benefit for intensive vegetable production, J. Clean. Prod., 225, 984, 10.1016/j.jclepro.2019.03.191