BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences

FEMS Microbiology Letters - Tập 174 Số 2 - Trang 247-250 - 1999
Tatiana Tatusova1, Thomas Madden1
1National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA

Tóm tắt

Từ khóa


Tài liệu tham khảo

Altschul, 1990, Basic local alignment search tool, J. Mol. Biol., 215, 403, 10.1016/S0022-2836(05)80360-2

Altschul, 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res., 25, 3389, 10.1093/nar/25.17.3389

Smith, 1981, Identification of common molecular subsequences, J. Mol. Biol., 147, 195, 10.1016/0022-2836(81)90087-5

Needleman, 1970, A general method applicable to the search for similarities in the amino acid sequences of two proteins, J. Mol. Biol., 48, 443, 10.1016/0022-2836(70)90057-4

Tomb, 1997, The complete genome sequence of the gastric pathogen Helicobacter pylori, Nature, 388, 539, 10.1038/41483

Alm, 1999, Genomic sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori, Nature, 397, 176, 10.1038/16495

Henikoff, 1992, Amino acid substitution matrices from protein blocks, Proc. Natl. Acad. Sci. USA, 89, 10915, 10.1073/pnas.89.22.10915

Altschul, 1986, Optimal sequence alignment using affine gap costs, Bull. Math. Biol., 48, 603, 10.1007/BF02462326

Karlin, 1990, Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes, Proc. Natl. Acad. Sci. USA, 87, 2264, 10.1073/pnas.87.6.2264

Wootton, 1993, Statistics of local complexity in amino acid sequences and sequence databases, Comput. Chem., 17, 149, 10.1016/0097-8485(93)85006-X

Altschul, 1996, Local alignment statistics, Methods Enzymol., 266, 460, 10.1016/S0076-6879(96)66029-7