Auxenochlorella protothecoides populations adapted to low phosphate conditions accumulated more non-phosphorus glycerolipids and biomass than wild type progenitors
Tài liệu tham khảo
Abida, 2015, Membrane glycerolipid remodeling triggered by nitrogen and phosphorus starvation in phaeodactylum tricornutum, Plant Physiol., 167, 118, 10.1104/pp.114.252395
Bari, 2006, PHO2, MicroRNA399, and PHR1 define a phosphate-signaling pathway in plants, Plant Physiol., 141, 988, 10.1104/pp.106.079707
Bold, 1949, The morphology of chlamydomonas chlamydogama, Sp. Nov, Bull. Torrey Bot. Club, 76, 101, 10.2307/2482218
Carnal, 1983, Phosphofructokinase activities in photosynthetic organisms: the occurrence of pyrophosphate-dependent 6-phosphofructokinase in plants and algae, Plant Physiol., 71, 150, 10.1104/pp.71.1.150
Cordell, 2009, The story of phosphorus: global food security and food for thought, Global Environ. Chang., 19, 292, 10.1016/j.gloenvcha.2008.10.009
Dörmann, 2002, Galactolipids rule in seed plants, Trends Plant Sci., 7, 112, 10.1016/S1360-1385(01)02216-6
DePristo, 2011, A framework for variation discovery and genotyping using next-generation DNA sequencing data, Nat. Genet., 43, 491, 10.1038/ng.806
Du, 2018, Galactoglycerolipid lipase PGD1 is involved in thylakoid membrane remodeling in response to adverse environmental conditions in chlamydomonas, Plant Cell, 30, 447
Duff, 1989, Phosphate starvation inducible `bypasses’ of adenylate and phosphate dependent glycolytic enzymes in brassica nigra suspension cells, Plant Physiol., 90, 1275, 10.1104/pp.90.4.1275
Eichenberger, 1997, Lipids of Pavlova lutheri: cellular site and metabolic role of DGCC, Phytochemistry, 45, 1561, 10.1016/S0031-9422(97)00201-X
Fan, 2011, A chloroplast pathway for the de novo biosynthesis of triacylglycerol in Chlamydomonas reinhardtii, FEBS Lett., 585, 1985, 10.1016/j.febslet.2011.05.018
Feng, 2016, Forms and lability of phosphorus in algae and aquatic macrophytes characterized by solution 31 P NMR coupled with enzymatic hydrolysis, Sci. Rep., 6, 1, 10.1038/srep37164
Folch, 1957, A simple method for the isolation and purification of total lipides from animal tissues, J. Biol. Chem., 226, 497, 10.1016/S0021-9258(18)64849-5
Gao, 2014, Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomes, BMC Genom., 15, 582, 10.1186/1471-2164-15-582
Gauthier, 1994, Inorganic phosphate (Pi) enhancement of dark respiration in the Pi-limited green alga selenastrum minutum (interactions between H+/Pi cotransport, the plasmalemma H+-ATPase, and dark respiratory carbon flow), Plant Physiol., 104, 629, 10.1104/pp.104.2.629
Gearing, 2019, CiiiDER: a tool for predicting and analysing transcription factor binding sites, PLoS One, 14, 10.1371/journal.pone.0215495
Gonzàlez-Meler, 2001, Metabolic regulation of leaf respiration and alternative pathway activity in response to phosphate supply, Plant Cell Environ., 24, 205, 10.1111/j.1365-3040.2001.00674.x
Gu, 2016, Complex heatmaps reveal patterns and correlations in multidimensional genomic data, Bioinformatics, 32, 2847, 10.1093/bioinformatics/btw313
Härtel, 2000, DGD1-independent biosynthesis of extraplastidic galactolipids after phosphate deprivation in Arabidopsis, PNAS, 97, 10649, 10.1073/pnas.180320497
Higgins, 2015, Informatics for improved algal taxonomic classification and research: a case study of UTEX 2341, Algal Res., 12, 545, 10.1016/j.algal.2015.10.016
Hoekman, 2012, Review of biodiesel composition, properties, and specifications, Renew. Sustain. Energy Rev., 16, 143, 10.1016/j.rser.2011.07.143
Hu, 2008, Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances, Plant J., 54, 621, 10.1111/j.1365-313X.2008.03492.x
Kalisch, 2016, DGDG and glycolipids in plants and algae, 51
Khozin-Goldberg, 2006, The effect of phosphate starvation on the lipid and fatty acid composition of the fresh water eustigmatophyte Monodus subterraneus, Phytochemistry, 67, 696, 10.1016/j.phytochem.2006.01.010
Kim, 2016, Centrifuge: rapid and sensitive classification of metagenomic sequences, Genome Res., 26, 1721, 10.1101/gr.210641.116
Kind, 2012, Qualitative analysis of algal secretions with multiple mass spectrometric platforms, J. Chromatogr. A, 1244, 139, 10.1016/j.chroma.2012.04.074
Knittelfelder, 2014, A versatile ultra-high performance LC-MS method for lipid profiling, J. Chromatogr. B Anal. Technol. Biomed. Life Sci., 951–952, 119, 10.1016/j.jchromb.2014.01.011
Kobayashi, 2009, Type-B monogalactosyldiacylglycerol synthases are involved in phosphate starvation-induced lipid remodeling, and are crucial for low-phosphate adaptation, Plant J., 57, 322, 10.1111/j.1365-313X.2008.03692.x
Kuang, 2009, Molecular and biochemical characterization of AtPAP15, a purple acid phosphatase with phytase activity, in Arabidopsis, Plant Physiol., 151, 199, 10.1104/pp.109.143180
Kumar, 2007, Mfuzz: a software package for soft clustering of microarray data, Bioinformation, 2, 5, 10.6026/97320630002005
Kumari, 2021, Nitrogen, phosphorus and high CO2 modulate photosynthesis, biomass and lipid production in the green alga Chlorella vulgaris, Photosynth. Res., 148, 17, 10.1007/s11120-021-00828-0
Lee, 2017, Lipid turnover between membrane lipids and neutral lipids via inhibition of diacylglyceryl N,N,N-trimethylhomoserine synthesis in Chlamydomonas reinhardtii, Algal Res., 27, 162, 10.1016/j.algal.2017.09.001
Li, 2012, A galactoglycerolipid lipase is required for triacylglycerol accumulation and survival following nitrogen deprivation in chlamydomonas reinhardtii, Plant Cell, 24, 4670, 10.1105/tpc.112.105106
Li, 2014, Choreography of transcriptomes and lipidomes of nannochloropsis reveals the mechanisms of oil synthesis in microalgae, Plant Cell, 26, 1645, 10.1105/tpc.113.121418
Liu, 2013, Lipid metabolism in microalgae distinguishes itself, Curr. Opin. Biotechnol., 24, 300, 10.1016/j.copbio.2012.08.008
Love, 2014, Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2, Genome Biol., 15, 550, 10.1186/s13059-014-0550-8
Martin, 2020, Surviving starvation: proteomic and lipidomic profiling of nutrient deprivation in the smallest known free-living eukaryote, Metabolites, 10, 273, 10.3390/metabo10070273
Metting, 1996, Biodiversity and application of microalgae, J. Ind. Microbiol. Biotechnol., 17, 477, 10.1007/BF01574779
Miao, 2006, Biodiesel production from heterotrophic microalgal oil, Bioresour. Technol., 97, 841, 10.1016/j.biortech.2005.04.008
Miyasaka, 2000, Isolation of several anti-stress genes from the halotolerant green alga Chlamydomonas by simple functional expression screening with Escherichia coli, World J. Microbiol. Biotechnol., 16, 23, 10.1023/A:1008982332139
Moraes, 2000, Purification and characterization of phosphoenolpyruvate carboxylase from Brassica napus (rapeseed) suspension cell cultures, Eur. J. Biochem., 267, 4465, 10.1046/j.1432-1327.2000.01495.x
Nilsson, 2007, Increased expression of the MYB-related transcription factor, PHR1, leads to enhanced phosphate uptake in Arabidopsis thaliana, Plant Cell Environ., 30, 1499, 10.1111/j.1365-3040.2007.01734.x
Palsson, 2011, Adaptive laboratory evolution: this tool for studying molecular mechanisms and evolutionary dynamics follows bacteria as they adapt to environmental stress, Microbe Mag., 6, 69, 10.1128/microbe.6.69.1
Pant, 2015, The transcription factor PHR1 regulates lipid remodeling and triacylglycerol accumulation in Arabidopsis thaliana during phosphorus starvation, J. Exp. Bot., 66, 1907, 10.1093/jxb/eru535
Park, 2008, Blending effects of biodiesels on oxidation stability and low temperature flow properties, Bioresour. Technol., 99, 1196, 10.1016/j.biortech.2007.02.017
Park, 2008, Growth promotion of Chlorella ellipsoidea by co-inoculation with Brevundimonas sp. isolated from the microalga, Hydrobiologia, 598, 219, 10.1007/s10750-007-9152-8
Park, 2018, Low-phosphate-selected Auxenochlorella protothecoides redirects phosphate to essential pathways while producing more biomass, PLoS One, 13, 10.1371/journal.pone.0198953
Patel, 2018, Heterotrophic cultivation of Auxenochlorella protothecoides using forest biomass as a feedstock for sustainable biodiesel production, Biotechnol. Biofuels, 11, 169, 10.1186/s13068-018-1173-1
Paver, 2013, Interactions between specific phytoplankton and bacteria affect lake bacterial community succession, Environ. Microbiol., 15, 2489, 10.1111/1462-2920.12131
Petzoldt T. growthrates: estimate growth rates from experimental data [Internet]. 2019. Available from: https://CRAN.R-project.org/package=growthrates.
Plaxton, 2011, Metabolic adaptations of phosphate-starved plants, Plant Physiol., 156, 1006, 10.1104/pp.111.175281
Qari, 2020, Fatty acid synthesis by Chlamydomonas reinhardtii in phosphorus limitation, J. Bioenergy Biomembr., 52, 27, 10.1007/s10863-019-09813-8
Riekhof, 2003, The sulfolipids 2′-O-acyl-sulfoquinovosyldiacylglycerol and sulfoquinovosyldiacylglycerol are absent from a chlamydomonas reinhardtii mutant deleted in SQD1, Plant Physiol., 133, 864, 10.1104/pp.103.029249
Rubio, 2001, A conserved MYB transcription factor involved in phosphate starvation signaling both in vascular plants and in unicellular algae, Genes Dev., 15, 2122, 10.1101/gad.204401
Sandelin, 2004, JASPAR: an open-access database for eukaryotic transcription factor binding profiles, Nucleic Acids Res., 32, D91, 10.1093/nar/gkh012
Sanina, 2004, Fatty acid composition of individual polar lipid classes from marine macrophytes, Phytochemistry, 65, 721, 10.1016/j.phytochem.2004.01.013
Sasaki, 2004, A wheat gene encoding an aluminum-activated malate transporter, Plant J., 37, 645, 10.1111/j.1365-313X.2003.01991.x
Sato, 2003, Glycerolipid synthesis in Chlorella kessleri 11h: I. Existence of a eukaryotic pathway, Biochim. et Biophys. Acta BBA Mol. Cell Biol. Lipids, 1633, 27
Sawaki, 2013, Characterization of Al-responsive citrate excretion and citrate-transporting MATEs in Eucalyptuscamaldulensis, Planta, 237, 979, 10.1007/s00425-012-1810-z
Schenk, 2013, Purple acid phosphatase: a journey into the function and mechanism of a colorful enzyme, Coord. Chem. Rev., 257, 473, 10.1016/j.ccr.2012.03.020
Šimek, 2011, Alga-derived substrates select for distinct betaproteobacterial lineages and contribute to niche separation in limnohabitans strains, Appl. Environ. Microbiol., 77, 7307, 10.1128/AEM.05107-11
Speciale, 2016, YihQ is a sulfoquinovosidase that cleaves sulfoquinovosyl diacylglyceride sulfolipids, Nat. Chem. Biol., 12, 215, 10.1038/nchembio.2023
Theodorou, 1991, Effects of phosphorus limitation on respiratory metabolism in the green alga selenastrum minutum, Plant Physiol., 95, 1089, 10.1104/pp.95.4.1089
Tjellström, 2008, Membrane phospholipids as a phosphate reserve: the dynamic nature of phospholipid-to-digalactosyl diacylglycerol exchange in higher plants, Plant Cell Environ., 31, 1388, 10.1111/j.1365-3040.2008.01851.x
Vanlerberghe, 2013, Alternative oxidase: a mitochondrial respiratory pathway to maintain metabolic and signaling homeostasis during abiotic and biotic stress in plants, Int. J. Mol. Sci., 14, 6805, 10.3390/ijms14046805
Weger, 1996, Interactions between respiration and inorganic phosphate uptake in phosphate-limited cells of Chlamydomonas reinhardtii, Physiol. Plant, 97, 635, 10.1111/j.1399-3054.1996.tb00526.x
Wigmosta, 2011, National microalgae biofuel production potential and resource demand, Water Resour. Res., 47, W00H04, 10.1029/2010WR009966
Wykoff, 1999, Psr1, a nuclear localized protein that regulates phosphorus metabolism in Chlamydomonas, PNAS, 96, 15336, 10.1073/pnas.96.26.15336
Xu, 2006, High quality biodiesel production from a microalga Chlorella protothecoides by heterotrophic growth in fermenters, J. Biotechnol., 126, 499, 10.1016/j.jbiotec.2006.05.002
Youens-Clark, 2019, iMicrobe: tools and data-driven discovery platform for the microbiome sciences, Gigascience, 8, 10.1093/gigascience/giz083
Yu, 2012, clusterProfiler: an R package for comparing biological themes among gene clusters, OMICS A J. Integr. Biol., 16, 284, 10.1089/omi.2011.0118
