Atomic force microscopy in biology and biomedicine

Binnig, 1986, Atomic force microscope, Phys Rev Lett, 56, 930, 10.1103/PhysRevLett.56.930 Binnig, 1987, Atomic resolution with atomic force microscope, Europhys Lett, 3, 1281, 10.1209/0295-5075/3/12/006 Marti, 1987, Atomic force microscopy of liquid-covered surfaces: atomic resolution, Appl Phys Lett, 51, 484, 10.1063/1.98374 Gould, 1998, Molecular resolution images of amino acid crystals with the atomic force microscope, Nature, 332, 332, 10.1038/332332a0 Albrecht, 1987, Atomic resolution images of a nonconductor by atomic force microscopy, J Appl Phys, 62, 2599, 10.1063/1.339435 Meyer, 1988, Novel optical approach to atomic force microscopy, Appl Phys Lett, 53, 2400, 10.1063/1.100425 De Stefanis, 2001 Israelachvili, 1991 San Paulo, 2000, High-resolution imaging of antibodies by tapping-mode atomic force microscopy: attractive and repulsive tip-sample interaction regimes, Biophys J, 78, 1599, 10.1016/S0006-3495(00)76712-9 Schaffer, 1996, Studies of vibrating atomic force microscopecantilevers in liquid, J Appl Phys, 80, 3622, 10.1063/1.363308 Moller, 1999, Tapping-mode atomic force microscopy produces faithful high- resolution images of protein surfaces, Biophys J, 77, 1150, 10.1016/S0006-3495(99)76966-3 Malkin, 1995, Investigation of virus crystal growth mechanisms by in situ atomic force microscopy, Phys Rev Lett, 75, 2778, 10.1103/PhysRevLett.75.2778 Malkin, 1999, Surface processes in the crystallization of turnip yellow mosaic virus visualized by atomic force microscopy, J Struct Biol, 127, 35, 10.1006/jsbi.1999.4128 Malkin, 2002, Application of atomic force microscopy to studies of surface processes in virus crystallization and structural biology, Acta Crystallogr D Biol Crystallogr, 58, 1617, 10.1107/S090744490201274X Kuznetsov, 2004, Atomic force microscopy investigation of wild-type Moloney murine leukemia virus particles and virus particles lacking the envelope protein, Virology, 323, 189, 10.1016/j.virol.2004.02.023 Kuznetsov, 2003, Atomic force microscopy investigation of human immunodeficiency virus (HIV) and HIV-infected lymphocytes, J Virol, 77, 11896, 10.1128/JVI.77.22.11896-11909.2003 Kuznetsov, 2008, Atomic force microscopy investigation of vaccinia virus structure, J Virol, 82, 7551, 10.1128/JVI.00016-08 Malkin, 2003, Structure of intracellular mature vaccinia virus visualized by in situ atomic force microscopy, J Virol, 77, 6332, 10.1128/JVI.77.11.6332-6340.2003 Kuznetsov, 2010, Atomic force microscopy investigation of the giant mimivirus, Virology, 404, 127, 10.1016/j.virol.2010.05.007 Xiao, 2009, Structural studies of the giant mimivirus, PLoS Biol, 7, e92, 10.1371/journal.pbio.1000092 Kuznetsov, 2005, Investigation by atomic force microscopy of the structure of Ty3 retrotransposon particles, J Virol, 79, 8032, 10.1128/JVI.79.13.8032-8045.2005 Kuznetsov, 2007, Atomic force microscopy investigation of Mason-Pfizer monkey virus and human immunodeficiency virus type 1 reassembled particles, Virology, 360, 434, 10.1016/j.virol.2006.10.015 Chen, 2004, Purification of the recombinant hepatitis B virus core antigen (rHBcAg) produced in the yeast Saccharomyces cerevisiae and comparative observation of its particles by transmission electron microscopy (TEM) and atomic force microscopy (AFM), Micron, 35, 311, 10.1016/j.micron.2003.12.003 Chen, 2005, Expression of HBcAg mutant with long internal deletion in Saccharomyces cerevisiae and observation of its self-assembly particles by atomic force microscopy (AFM), Int J Biol Macromol, 37, 239, 10.1016/j.ijbiomac.2005.12.001 Cho, 2009, Mechanism of an amphipathic alpha-helical peptide's antiviral activity involves size-dependent virus particle lysis, ACS Chem Biol, 4, 1061, 10.1021/cb900149b Chan, 2011, Visualization of the structures of the hepatitis C virus replication complex, Biochem Biophys Res Commun, 404, 574, 10.1016/j.bbrc.2010.12.037 Rippe, 1997, Transcriptional activation via DNA-looping: visulization of intermediates in the activation pathway of E. coli RNA polymerase σ54 holoenzyme by scanning force microscopy, J Mol Biol, 270, 125, 10.1006/jmbi.1997.1079 Kasas, 1997, Escherichia coli RNA polymerase activity observed using atomic force microscopy, Biochemistry, 36, 461, 10.1021/bi9624402 Heus, 2011, Atomic force microscope-based single-molecule force spectroscopy of RNA unfolding, Anal Biochem, 414, 1, 10.1016/j.ab.2011.03.012 Hoshi, 2011, Atomic force microscopy imaging of human metaphase chromosomes in liquid, Methods Mol Biol, 736, 109, 10.1007/978-1-61779-105-5_8 Ushiki, 2008, Techniques for imaging human metaphase chromosomes in liquid conditions by atomic force microscopy, Nanotechnology, 19, 384022, 10.1088/0957-4484/19/38/384022 Ushiki, 2008, Atomic force microscopy for imaging human metaphase chromosomes, Chromosome Res, 16, 383, 10.1007/s10577-008-1241-7 Hoshi, 2004, Imaging of human metaphase chromosomes by atomic force microscopy in liquid, Cytogenet Genome Res, 107, 28, 10.1159/000079568 Daban, 2011, Electron microscopy and atomic force microscopy studies of chromatin and metaphase chromosome structure, Micron, 42, 733, 10.1016/j.micron.2011.05.002 Del Sol, 2007, Characterization of changes to the cell surface during the life cycle of Streptomyces coelicolor: atomic force microscopy of living cells, J Bacteriol, 189, 2219, 10.1128/JB.01470-06 Miller, 2006, The mechanical properties of E. coli type 1 pili measured by atomic force microscopy techniques, Biophys J, 91, 3848, 10.1529/biophysj.106.088989 Cao, 2007, Investigation of spacer length effect on immobilized Escherichia coli pili-antibody molecular recognition by AFM, Biotechnol Bioeng, 98, 1109, 10.1002/bit.21503 Read, 2007, Nanoscale visualization of a fibrillar array in the cell wall of filamentous cyanobacteria and its implications for gliding motility, J Bacteriol, 189, 7361, 10.1128/JB.00706-07 Oh, 2007, Influence of culture conditions on Escherichia coli O157:H7 biofilm formation by atomic force microscopy, Ultramicroscopy, 107, 869, 10.1016/j.ultramic.2007.01.021 Yang, 2006, Atomic force microscopy study of different effects of natural and semisynthetic beta-lactam on the cell envelope of Escherichia coli, Anal Chem, 78, 7341, 10.1021/ac0604890 Ding, 2008, The Sushi peptides: structural characterization and mode of action against Gram-negative bacteria, Cell Mol Life Sci, 65, 1202, 10.1007/s00018-008-7456-0 Li, 2007, Atomic force microscopy study of the antimicrobial action of Sushi peptides on gram negative bacteria, Biochim Biophy Acta, 1768, 411, 10.1016/j.bbamem.2006.12.010 Ribeiro, 2012, Antimicrobial properties of analgesic kyotorphin peptides unraveled through atomic force microscopy, Biochem Biophys Res Commun, 420, 676, 10.1016/j.bbrc.2012.03.065 Meincken, 2005, Atomic force microscopy study of the effect of antimicrobial peptides on the cell envelope of Escherichia coli, Antimicrob Agents Chemother, 49, 4085, 10.1128/AAC.49.10.4085-4092.2005 Rossetto, 2007, Atomic force microscopy evaluation of the effects of a novel antimicrobial multimeric peptide on Pseudomonas aeruginosa, Nanomedicine, 3, 198, 10.1016/j.nano.2007.06.002 Liou, 2011, Visible light responsive photocatalyst induces progressive and apical-terminus preferential damages on Escherichia coli surfaces, PloS One, 6, e19982, 10.1371/journal.pone.0019982 Braet, 1998, Imaging surface and submembranous structures with the atomic force microscope: a study on living cancer cells, fibroblasts and macrophages, J Microsc, 190, 328, 10.1046/j.1365-2818.1998.00333.x Shi, 2012, Insulin-producing cells from human adipose tissue-derived mesenchymal stem cells detected by atomic force microscope, Appl Microbiol Biotechnol, 94, 479, 10.1007/s00253-012-3904-8 Lekka, 2012, Cancer cell detection in tissue sections using AFM, Arch Biochem Biophys, 518, 151, 10.1016/j.abb.2011.12.013 Kim, 2012, AFM-detected apoptotic changes in morphology and biophysical property caused by paclitaxel in Ishikawa and HeLa cells, PloS One, 7, e30066, 10.1371/journal.pone.0030066 Wang, 2009, Atomic force microscope study of tumor cell membranes following treatment with anti-cancer drugs, Biosens Bioelectron, 25, 721, 10.1016/j.bios.2009.08.011 Liu, 2010, Covalent linkage of nanodiamond-paclitaxel for drug delivery and cancer therapy, Nanotechnology, 21, 315106, 10.1088/0957-4484/21/31/315106 Tsai, 2011, 7-Chloro-6-piperidin-1-yl-quinoline-5,8-dione (PT-262), a novel ROCK inhibitor blocks cytoskeleton function and cell migration, Biochem Pharmacol, 81, 856, 10.1016/j.bcp.2011.01.009 Jin, 2012, BMP2 promotes migration and invasion of breast cancer cells via cytoskeletal reorganization and adhesion decrease: an AFM investigation, Appl Microbiol Biotechnol, 93, 1715, 10.1007/s00253-011-3865-3 Kumar, 2011, Antroquinonol inhibits NSCLC proliferation by altering PI3K/mTOR proteins and miRNA expression profiles, Mutat Res, 707, 42, 10.1016/j.mrfmmm.2010.12.009 Zhang, 1997, Cryo-atomic force microscopy of smooth muscle myosin, Biophys J, 72, 1308, 10.1016/S0006-3495(97)78777-0 McAllister, 2005, Protein interactions and misfolding analyzed by AFM force spectroscopy, J Mol Biol, 354, 1028, 10.1016/j.jmb.2005.10.012 Lorenzo, 1994, Beta-amyloid neurotoxicity requires fibril formation and is inhibited by Congo Red, Proc Natl Acad Sci U S A, 91, 12243, 10.1073/pnas.91.25.12243 Lambert, 1998, Diffusible, nonfibrillar ligands derived from Abeta1-42 are potent central nervous system neurotoxins, Proc Natl Acad Sci U S A, 95, 6448, 10.1073/pnas.95.11.6448 Mastrangelo, 2006, High-resolution atomic force microscopy of soluble Abeta42 oligomers, J Mol Biol, 358, 106, 10.1016/j.jmb.2006.01.042 Muller, 1998, Mapping flexible protein domains at subnanometer resolution with the atomic force microscope, FEBS Lett, 430, 105, 10.1016/S0014-5793(98)00623-1 Engel, 1999, Atomic force microscopy: a powerful tool to observe biomolecules at work, Trends Cell Biol, 9, 77, 10.1016/S0962-8924(98)01415-9 Oesterhelt, 2000, Unfolding pathways of individual bacteriorhodopsins, Science, 288, 143, 10.1126/science.288.5463.143 Bostrom, 2001, Specific ion effects: why DLVO theory fails for biology and colloid systems, Phys Rev Lett, 87, 168103, 10.1103/PhysRevLett.87.168103 Muller, 1997, The height of biomolecules measured with the atomic force microscope depends on electrostatic interactions, Biophys J, 73, 1633, 10.1016/S0006-3495(97)78195-5 Muller, 1997, Adsorption of biological molecules to a solid support for scanning probe microscopy, J Struct Biol, 119, 172, 10.1006/jsbi.1997.3875 Philippsen, 2002, Imaging the electrostatic potential of transmembrane channels: atomic probe microscopy of OmpF porin, Biophys J, 82, 1667, 10.1016/S0006-3495(02)75517-3 Liou, 2002, Absolute measurement of phosphorylation levels in a biological membrane using atomic force microscopy: the creation of phosphorylation maps, Biochemistry, 41, 8535, 10.1021/bi025962s