Assessment of genetic diversity, detection of strain-specific single nucleotide polymorphisms and identification of the Bangladesh and Vietnam strain of Channa striata by PCR-RFLP analysis of the mitochondrial COI gene fragment
Tài liệu tham khảo
Akasaki, 2006, Species identification and PCR‐RFLP analysis of Cytochrome b gene in Cod fish (Order Gadiformes) products, Journal of Food Science, 71, C190, 10.1111/j.1365-2621.2006.tb15616.x
Avise, 1989, A role for molecular genetics in the recognition and conservation of endangered species, Trends in Ecology & Evolution, 4, 279, 10.1016/0169-5347(89)90203-6
Baffoni, 2013, Identification of species belonging to the Bifidobacterium genus by PCR-RFLP analysis of a hsp60 gene fragment, BMC Microbiology, 13, 149, 10.1186/1471-2180-13-149
Baisvar, 2015, ATPase 8/6 gene based genetic diversity assessment of snakehead Murrel, Channa striata (Perciformes, Channidae), Russian Journal of Genetics, 51, 1007, 10.1134/S102279541510004X
Baisvar, 2019, Population structuring of Channa striata from Indian waters using control region of mtDNA, Mitochondrial DNA Part A, 30, 414, 10.1080/24701394.2018.1532416
Bandelt, 1999, Median-joining networks for inferring intraspecific phylogenies, Molecular Biology and Evolution, 16, 37, 10.1093/oxfordjournals.molbev.a026036
Barua, 1994, The status of epizootic ulcerative syndrome (EUS) of fish of Bangladesh, 82
Barua, 1989, An investigation into the prevalence of fish diseases in Bangladesh during 1988-1989, Bangladesh Journal of Aquaculture, 11, 75
Boonkusol, 2016, Genetic variation of striped snakehead fish (Channa striata) in River basin of central Thailand inferred from mtDNA COI gene sequences analysis, Journal of Biological Sciences, 16, 37
Brumfield, 2003, The utility of single nucleotide polymorphisms in inferences of population history, Trends in Ecology & Evolution, 18, 249, 10.1016/S0169-5347(03)00018-1
Chaudhry
Cornuet, 1996, Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data, Genetics, 144, 2001, 10.1093/genetics/144.4.2001
Dadi, 2012, Effect of population reduction on mtDNA diversity and demographic history of Korean cattle populations, Asian-Australasian Journal of Animal Sciences, 25, 1223, 10.5713/ajas.2012.12122
DoF, 2018, Vol. 35
Dominguez-Dominguez, 2008, Evolutionary history of the endangered fish Zoogoneticus quitzeoensis (Bean, 1898) (Cyprinodontiformes: Goodeidae) using a sequential approach to phylogeography based on mitochondrial and nuclear DNA data, BMC Evolutionary Biology, 8, 161, 10.1186/1471-2148-8-161
Excoffier, 2010, Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under linux and windows, Molecular Ecology Resources, 10, 564, 10.1111/j.1755-0998.2010.02847.x
Excoffier, 1992, Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data, Genetics, 131, 479, 10.1093/genetics/131.2.479
Ferrito, 2019, Swordfish or shark slice? A rapid response by COIBar–RFLP, Foods, 8, 537, 10.3390/foods8110537
Frankham, 1996, Relationship of genetic variation to population size in wildlife, Conservation Biology Series, 10, 1500, 10.1046/j.1523-1739.1996.10061500.x
Garg, 2018, Molecular insights into the genetic and haplotype diversity among four populations of Catla catla from Madhya Pradesh revealed through mtDNA cyto b gene sequences, Journal of Genetic Engineering and Biotechnology, 16, 169, 10.1016/j.jgeb.2017.11.003
Habib, 2010, Evaluation of cytochrome b mtDNA sequences in genetic diversity studies of Channa marulius (Channidae: Perciformes), Molecular Biology Reports, 38, 841, 10.1007/s11033-010-0175-2
Hall, 1999, BioEdit: A user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT, Nucleic Acids Symposium Series, 41, 95
Islam, 2004, Randomly Amplified Polymorphic DNA analysis of four different populations of the Indian major carp Labeo rohita (Hamilton), Journal of Applied Ichthyology, 20, 407, 10.1111/j.1439-0426.2004.00588.x
IUCN Bangladesh, 2015
Jamaluddin, 2011, Genetic structure of the snakehead murrel, Channa striata (Channidae) based on the cytochrome c oxidase subunit I gene: Influence of historical and geomorphological factors, Genetics and Molecular Biology, 34, 152, 10.1590/S1415-47572011000100026
Kamarudin, 2009, Phylogeny and phylogeography of Barbonymus schwanenfeldii (Cyprinidae) from Malaysia inferred using partial cytochrome b mtDNA gene, Journal of Tropical Biological Conservation, 5, 1
Kimura, 1980, A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences, Journal of Molecular Evolution, 16, 111, 10.1007/BF01731581
Kitanishi, 2018, A simple SNP genotyping method reveals extreme invasions of non-native haplotypes in pale chub Opsariichthys platypus, a common cyprinid fish in Japan, PloS One, 13, 10.1371/journal.pone.0191731
Kumar, 2016, MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger data sets, Molecular Biology and Evolution, 33, 1870, 10.1093/molbev/msw054
Lacy, 1987, Loss of genetic diversity from managed populations: Interacting effects of drift, mutation, immigration, selection, and population subdivision, Conservation Biology Series, 1, 143, 10.1111/j.1523-1739.1987.tb00023.x
Lande, 1998, Anthropogenic, ecological and genetic factors in extinction and conservation, Researches on Population Ecology, 40, 259, 10.1007/BF02763457
Lanfear, 2014, Population size and the rate of evolution, Trends in Ecology & Evolution, 29, 33, 10.1016/j.tree.2013.09.009
Librado, 2009, DnaSP v5: A software for comprehensive analysis of DNA polymorphism data, Bioinformatics, 25, 1451, 10.1093/bioinformatics/btp187
Lilley, 2002, Social, economic and biodiversity impacts of epizootic ulcerative syndrome (EUS), 127
Mandal, 2012, Mitochondrial DNA variation in natural populations of endangered Indian Feather-Back Fish, Chitala chitala, Molecular Biology Reports, 39, 1765, 10.1007/s11033-011-0917-9
Michel, 2008, Distinct migratory and non-migratory ecotypes of an endemic New Zealand eleotrid (Gobiomorphus cotidianus)-implications for incipient speciation in island freshwater fish species, BMC Evolutionary Biology, 8, 49, 10.1186/1471-2148-8-49
Ovalle, 2014, Reliable molecular identification of nine tropical whitefly species, Ecology & Evolution, 4, 3778, 10.1002/ece3.1204
Pappalardo, 2018, Differential flatfish species detection by COIBar-RFLP in processed seafood products, European Food Research and Technology, 244, 2191, 10.1007/s00217-018-3129-x
Paray, 2013, Breeding behavior and parental care of the induced bred striped Murrel Channa striatus under captive conditions, Turkish Journal of Fisheries and Aquatic Sciences, 13, 707
Pavlova, 2017, Severe consequences of habitat fragmentation on genetic diversity of an endangered Australian freshwater fish: A call for assisted gene flow, Evolutionary Applications, 10, 531, 10.1111/eva.12484
Projna, 2018
Raymond, 1995, An exact test for population differentiation, Evolution, 49, 1280, 10.1111/j.1558-5646.1995.tb04456.x
Rianti, 2015, Identification of diagnostic mitochondrial DNA single nucleotide polymorphisms specific to Sumatran Orangutan (Pongo abelii) populations, HAYATI Journal of Bioscience, 22, 149e156, 10.1016/j.hjb.2015.09.002
Spielman, 2004, Most species are not driven to extinction before genetic factors impact them, Proceedings of the National Academy of Sciences of the United States of America, 101, 15261, 10.1073/pnas.0403809101
Talwar, 1991, Vol. 2, 1152
Verspoor, 2012, Regional mtDNA SNP differentiation in European Atlantic salmon (Salmo salar): An assessment of potential utility for determination of natal origin, ICES Journal of Marine Science, 69, 1625, 10.1093/icesjms/fss029
Vrijenhoek, 1998, Conservation genetics of freshwater fish, Journal of Fish Biology, 53, 394, 10.1111/j.1095-8649.1998.tb01039.x
Wallace, 1987, Sequence analysis of cDNAs for the human and bovine ATP synthase beta subunit: Mitochondrial DNA genes sustain seventeen times more mutations, Current Genetics, 12, 81, 10.1007/BF00434661
Ward, 1994, A comparison of genetic diversity levels in marine, freshwater and anadromous fishes, Journal of Fish Biology, 44, 213, 10.1111/j.1095-8649.1994.tb01200.x
Ward, 2005, DNA barcoding of Australia's fish species, Philosophical Transactions of the Royal Society of London - Series B: Biological Sciences, 360, 1847, 10.1098/rstb.2005.1716
Weber, 2000, An empirical genetic assessment of the severity of northern elephant seal population bottleneck, Current Biology, 10, 1287, 10.1016/S0960-9822(00)00759-4
Wong, 2014, Catfish species identification using Lab-On-Chip PCR-RFLP, Journal of Aquatic Food Product Technology, 23, 10.1080/10498850.2012.690022
Xu, 2016, Identification of tuna species (Thunnini tribe) by PCR-RFLP analysis of mitochondrial DNA fragments, Food and Agricultural Immunology, 27, 301, 10.1080/09540105.2015.1086978
Zhou, 2019, Genetic diversity of Northern snakehead (Channa argus) based on complete mitochondrial COI gene sequences, Mitochondrial DNA Part B, 4, 599, 10.1080/23802359.2018.1561222