Assembly and catalysis of molybdenum or tungsten-containing formate dehydrogenases from bacteria
Tóm tắt
Từ khóa
Tài liệu tham khảo
Andreesen, 1974, The effect of ferrous ions, tungstate and selenite on the level of formate dehydrogenase in Clostridium formicoaceticum and formate synthesis from CO2 during pyruvate fermentation, Arch. Mikrobiol., 96, 103, 10.1007/BF00590167
Yamamoto, 1983, Purification and properties of NADP-dependent formate dehydrogenase from Clostridium thermoaceticum, a tungsten–selenium–iron protein, J. Biol. Chem., 258, 1826, 10.1016/S0021-9258(18)33062-X
Liu, 1984, Formate dehydrogenase of Clostridium pasteurianum, J. Bacteriol., 159, 375, 10.1128/JB.159.1.375-380.1984
Alissandratos, 2013, Clostridium carboxidivorans strain P7T recombinant formate dehydrogenase catalyzes reduction of CO2 to formate, Appl. Environ. Mikrobiol., 79, 741, 10.1128/AEM.02886-12
Appel, 2013, Frontiers, opportunities, and challenges in biochemical and chemical catalysis of CO2 fixation, Chem. Rev., 113, 6621, 10.1021/cr300463y
Anthony, 1975, The biochemistry of methylotrophic micro-organisms, Science, 62, 167
Jormakka, 2003, Formate dehydrogenase—a versatile enzyme in changing environments, Curr. Opin. Struct. Biol., 13, 418, 10.1016/S0959-440X(03)00098-8
Dijkhuizen, 1984, Current views on the regulation of autotrophic carbon dioxide fixation via the Calvin cycle in bacteria, Antonie Van Leeuwenhoek, 50, 473, 10.1007/BF02386221
Leonhartsberger, 2002, The molecular biology of formate metabolism in enterobacteria, J. Mol. Microbiol. Biotechnol., 4, 269
Macy, 1976, H2-dependent anaerobic growth of Escherichia coli on l-malate: succinate formation, J. Bacteriol., 125, 423, 10.1128/JB.125.2.423-428.1976
Wimpenny, 1967, The regulation of metabolism in facultative bacteria. 3. The effect of nitrate, BBA, 148, 233
Grimaldi, 2013, The prokaryotic Mo/W-bisPGD enzymes family: a catalytic workhorse in bioenergetic, BBA, 1827, 1048
Pinsent, 1954, The need for selenite and molybdate in the formation of formic dehydrogenase by members of the coli-aerogenes group of bacteria, Biochem. J., 57, 10, 10.1042/bj0570010
Brondino, 2004, Incorporation of either molybdenum or tungsten into formate dehydrogenase from Desulfovibrio alaskensis NCIMB 13491; EPR assignment of the proximal iron–sulfur cluster to the pterin cofactor in formate dehydrogenases from sulfate-reducing bacteria, J. Biol. Inorg. Chem., 145, 10.1007/s00775-003-0506-z
Moura, 2004, Mo and W bis-MGD enzymes: nitrate reductases and formate dehydrogenases, J. Biol. Inorg. Chem., 9, 791, 10.1007/s00775-004-0573-9
Enoch, 1975, The purification and properties of formate dehydrogenase and nitrate reductase from Escherichia coli, J. Biol. Chem., 250, 6693, 10.1016/S0021-9258(19)40989-7
Axley, 1990, Escherichia coli formate-hydrogen lyase, J. Biol. Chem., 265, 18213, 10.1016/S0021-9258(17)44740-5
Kearny, 1972, Formate dehydrogenase from Clostridium acidiurici, J. Bacteriol., 109, 152, 10.1128/JB.109.1.152-161.1972
Andreesen, 1973, Formate dehydrogenase of Clostridium thermoaceticum: incorporation of selenium-75, and the effects of selenite, molybdate, and tungstate on the enzyme, J. Bacteriol., 116, 867, 10.1128/JB.116.2.867-873.1973
Jones, 1981, Selenium-dependent and selenium-independent formate dehydrogenases of Methanococcus vannielii, J. Biol. Chem., 256, 656, 10.1016/S0021-9258(19)70024-6
Kröger, 1979, The formate dehydrogenase involved in electron transport from formate to fumarate in Vibrio succinogenes, FEBS J., 94, 465, 10.1111/j.1432-1033.1979.tb12914.x
de Bok, 2003, Two W-containing formate dehydrogenases (CO2-reductases) involved in syntrophic propionate oxidation by Syntrophobacter fumaroxidans, FEBS J., 270, 2476, 10.1046/j.1432-1033.2003.03619.x
Godfrey, 1987, Purification and properties of formate dehydrogenase from Pseudomonas aeruginosa. Characterization of haem and iron–sulphur centres by magnetic-circular-dichroism and electron-paramagnetic-resonance spectroscopy, Biochem. J., 243, 225, 10.1042/bj2430225
Ragsdale, 2008, Enzymology of the Wood–Ljungdahl pathway of acetogenesis, PNAS, 1125, 129
Schauer, 1982, Properties of formate dehydrogenase in Methanobacterium formicicum, J. Bacteriol., 150, 1, 10.1128/JB.150.1.1-7.1982
Wood, 2003, Function and regulation of the formate dehydrogenase genes of the methanogenic archaeon Methanococcus maripaludis, J. Bacteriol., 185, 2548, 10.1128/JB.185.8.2548-2554.2003
Simon, 2008, The organisation of proton motive and non-proton motive redox loops in prokaryotic respiratory systems, BBA, 1777, 1480
Enoch, 1982, Formate dehydrogenase from Escherichia coli, Methods Enzymol., 89, 537, 10.1016/S0076-6879(82)89093-9
Böhm, 1990, Nucleotide sequence and expression of an operon in Escherichia coli coding for formate hydrogenlyase components, Mol. Microbiol., 4, 231, 10.1111/j.1365-2958.1990.tb00590.x
Sauter, 1992, Mutational analysis of the operon (hyc) determining hydrogenase 3 formation in Escherichia coli, Mol. Microbiol., 6, 1523, 10.1111/j.1365-2958.1992.tb00873.x
Wang, 2003, Coordinate regulation of the Escherichia coli formate dehydrogenase fdnGHI and fdhF genes in response to nitrate, nitrite, and formate: roles for NarL and NarP, J. Bacteriol., 185, 5076, 10.1128/JB.185.17.5076-5085.2003
Jormakka, 2002, Molecular basis of proton motive force generation: structure of formate dehydrogenase-N, Science, 295, 1863, 10.1126/science.1068186
Jormakka, 2003, Protonmotive force generation by a redox loop mechanism, FEBS Lett., 545, 25, 10.1016/S0014-5793(03)00389-2
Abaibou, 1995, Expression and characterization of the Escherichia coli fdo locus and a possible physiological role for aerobic formate dehydrogenase, J. Bacteriol., 177, 7141, 10.1128/jb.177.24.7141-7149.1995
Pommier, 1992, A second phenazine methosulphate-linked formate dehydrogenase isoenzyme in Escherichia coli, BBA, 1107, 305, 10.1016/0005-2736(92)90417-K
Plunkett, 1993, Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2minutes, Nucleic Acids Res., 21, 3391, 10.1093/nar/21.15.3391
Iobbi-Nivol, 1990, Purification and further characterization of the second nitrate reductase of Escherichia coli K12, FEBS J., 188, 679, 10.1111/j.1432-1033.1990.tb15450.x
Boyington, 1997, Crystal structure of formate dehydrogenase H: catalysis involving Mo, molybdopterin, selenocysteine, and an Fe4S4 cluster, Science, 275, 1305, 10.1126/science.275.5304.1305
Pereira, 2011, A comparative genomic analysis of energy metabolism in sulfate reducing bacteria and archaea, Front. Microbiol., 2, 69, 10.3389/fmicb.2011.00069
Costa, 1997, Formate dehydrogenase from Desulfovibrio desulfuricans ATCC 27774: Isolation and spectroscopic characterization of the active sites (heme, iron–sulfur centers and molybdenum), J. Biol. Inorg. Chem., 2, 198, 10.1007/s007750050125
Venceslau, 2010, The Qrc membrane complex, related to the alternative complex III, is a menaquinone reductase involved in sulfate respiration, J. Biol. Chem., 285, 22774, 10.1074/jbc.M110.124305
Almendra, 1999, Purification and characterization of a tungsten-containing formate dehydrogenase from Desulfovibrio gigas, Biochemistry, 38, 16366, 10.1021/bi990069n
Raaijmakers, 2002, Gene sequence and the 1.8A crystal structure of the tungsten-containing formate dehydrogenase from Desulfovibrio gigas, Structure, 10, 1261, 10.1016/S0969-2126(02)00826-2
Friedebold, 1993, Physiological and biochemical characterization of the soluble formate dehydrogenase, a molybdoenzyme from Alcaligenes eutrophus, J. Bacteriol., 175, 4719, 10.1128/jb.175.15.4719-4728.1993
Jollie, 1991, Formate dehydrogenase from Methylosinus trichosporium OB3b, J. Biol. Chem., 266, 21853, 10.1016/S0021-9258(18)54716-5
Hartmann, 2013, The oxygen-tolerant and NAD(+)-dependent formate dehydrogenase from Rhodobacter capsulatus is able to catalyze the reduction of CO2 to formate, FEBS J., 280, 6083, 10.1111/febs.12528
Böhmer, 2014, The chaperone FdsC for Rhodobacter capsulatus formate dehydrogenase binds the bis-molybdopterin guanine dinucleotide cofactor, FEBS Lett., 588, 531, 10.1016/j.febslet.2013.12.033
Schlindwein, 1990, Identification and expression of the Escherichia coli fdhD and fdhE genes, which are involved in the formation of respiratory formate dehydrogenase, J. Bacteriol., 172, 6112, 10.1128/jb.172.10.6112-6121.1990
Thomé, 2012, A sulfurtransferase is essential for activity of formate dehydrogenases in Escherichia coli, J. Biol. Chem., 287, 4671, 10.1074/jbc.M111.327122
Raaijmakers, 2006, Formate-reduced E. coli formate dehydrogenase H: the reinterpretation of the crystal structure suggests a new reaction mechanism, J. Biol. Inorg. Chem., 11, 849, 10.1007/s00775-006-0129-2
Axley, 1991, Kinetics for formate dehydrogenase of Escherichia coli formate-hydrogenlyase, J. Biol. Chem., 266, 13731, 10.1016/S0021-9258(18)92760-2
Tiberti, 2012, Evidence for the formation of a Mo–H intermediate in the catalytic cycle of formate dehydrogenase, Inorg. Chem., 51, 8331, 10.1021/ic300863d
Axley, 1991, Catalytic properties of an Escherichia coli formate dehydrogenase mutant in which sulfur replaces selenium, PNAS, 88, 8450, 10.1073/pnas.88.19.8450
Khangulov, 1998, Selenium-containing formate dehydrogenase H from Escherichia coli: a molybdopterin enzyme that catalyzes formate oxidation without oxygen transfer, Biochemistry, 37, 3518, 10.1021/bi972177k
Leopoldini, 2008, Reaction mechanism of molybdoenzyme formate dehydrogenase, Chemistry, 14, 8674, 10.1002/chem.200800906
Mota, 2011, The mechanism of formate oxidation by metal-dependent formate dehydrogenases, J. Biol. Inorg. Chem., 16, 1255, 10.1007/s00775-011-0813-8
Rivas, 2007, EPR characterization of the molybdenum(V) forms of formate dehydrogenase from Desulfovibrio desulfuricans ATCC 27774 upon formate reduction, J. Inorg. Chem., 101, 1617
Cerqueira, 2013, The sulfur shift: an activation mechanism for periplasmic nitrate reductase and formate dehydrogenase, Inorg. Chem., 52, 10766, 10.1021/ic3028034
Luke, 2008, Biosynthesis of the respiratory formate dehydrogenases from Escherichia coli: characterization of the FdhE protein, Arch. Microbiol., 190, 685, 10.1007/s00203-008-0420-4
Oh, 1998, Structural analysis of the fds operon encoding the NAD+-linked formate dehydrogenase of Ralstonia eutropha, J. Biol. Chem., 273, 26349, 10.1074/jbc.273.41.26349
Lenger, 1997, Structure and function of a second gene cluster encoding the formate dehydrogenase of Wolinella succinogenes, FEBS J., 246, 646, 10.1111/j.1432-1033.1997.t01-2-00646.x
Witthoff, 2012, Corynebacterium glutamicum harbours a molybdenum cofactor-dependent formate dehydrogenase which alleviates growth inhibition in the presence of formate, Microbiology, 158, 2428, 10.1099/mic.0.059196-0
Reda, 2008, Reversible interconversion of carbon dioxide and formate by an electroactive enzyme, PNAS, 105, 10654, 10.1073/pnas.0801290105
Schuchmann, 2013, Direct and reversible hydrogenation of CO2 to formate by a bacterial carbon dioxide reductase, Science, 342, 1382, 10.1126/science.1244758
Friedebold, 1995, Structural and immunological studies on the soluble formate dehydrogenase from Alcaligenes eutrophus, Biol. Chem., 376, 561
Prince, 1985, Formate dehydrogenase from Clostridium pasteurianum — electron-paramagnetic resonance spectroscopy of the redox active-centers, FEBS Lett., 189, 263, 10.1016/0014-5793(85)81036-X
da Silva, 2012, Electron transfer between periplasmic formate dehydrogenase and cytochromes c in Desulfovibrio desulfuricans ATCC 27774, J. Biol. Inorg. Chem., 17, 831, 10.1007/s00775-012-0900-5
Sebban, 1995, Purification and characterization of the formate dehydrogenase from Desulfovibrio vulgaris Hildenborough, FEMS Microbiol. Lett., 133, 143, 10.1111/j.1574-6968.1995.tb07875.x
ElAntak, 2005, Role of the tetrahemic subunit in Desulfovibrio vulgaris Hildenborough formate dehydrogenase, Biochemistry, 44, 14828, 10.1021/bi0515366
Gladyshev, 1994, Coordination of selenium to molybdenum in formate dehydrogenase-H from Escherichia coli, PNAS, 91, 7708, 10.1073/pnas.91.16.7708
Jormakka, 2002, Purification and crystallization of the respiratory complex formate dehydrogenase-N from Escherichia coli, Acta Crystallogr. D Biol. Crystallogr., 58, 160, 10.1107/S0907444901017723
Benoit, 1998, Topological analysis of the aerobic membrane-bound formate dehydrogenase of Escherichia coli, J. Bacteriol., 180, 6625, 10.1128/JB.180.24.6625-6634.1998
Schauer, 1986, Composition of the coenzyme F420-dependent formate dehydrogenase from Methanobacterium formicicum, J. Bacteriol., 165, 405, 10.1128/jb.165.2.405-411.1986
White, 1992, Identification of formate dehydrogenase-specific mRNA species and nucleotide sequence of the fdhC gene of Methanobacterium formicicum, J. Bacteriol., 174, 4997, 10.1128/jb.174.15.4997-5004.1992
Nolling, 1997, Growth- and substrate-dependent transcription of the formate dehydrogenase (fdhCAB) operon in Methanobacterium thermoformicicum Z-245, J. Bacteriol., 179, 899, 10.1128/jb.179.3.899-908.1997
Jones, 1980, Reconstitution of a formate-NADP+ oxidoreductase from formate dehydrogenase and a 5-deazaflavin-linked NADP+ reductase isolated from Methanococcus vannielii, J. Biol. Chem., 255, 1049, 10.1016/S0021-9258(19)86139-2
Duarte, 1997, The formate dehydrogenase isolated from the aerobe Methylobacterium sp. RXM is a molybdenum-containing protein, Biochem. Biophys. Res. Commun., 230, 30, 10.1006/bbrc.1996.5879
Bokranz, 1991, Cloning and nucleotide sequence of the structural genes encoding the formate dehydrogenase of Wolinella succinogenes, Arch. Microbiol., 156, 119, 10.1007/BF00290984
Wang, 2013, Clostridium acidurici electron-bifurcating formate dehydrogenase, Appl. Environ. Microbiol., 79, 6176, 10.1128/AEM.02015-13
Leonhardt, 1977, Some properties of formate dehydrogenase, accumulation and incorporation of 185W-tungsten into proteins of Clostridium formicoaceticum, Arch. Microbiol., 115, 277, 10.1007/BF00446453
Andreese, 1974, Nicotinamide adenine-dinucleotide phosphate-dependent formate dehydrogenase from Clostridium thermoaceticum — purification and properties, J. Bacteriol., 120, 6, 10.1128/JB.120.1.6-14.1974
Ljungdahl, 1978, Formate dehydrogenase, a selenium–tungsten enzyme from Clostridium thermoaceticum, Methods Enzymol., 53, 360, 10.1016/S0076-6879(78)53042-5
Almendra, 1999, Purification and characterization of a tungsten-containing formate dehydrogenase from Desulfovibrio gigas, Biochemistry, 38, 16366, 10.1021/bi990069n
Laukel, 2003, The tungsten-containing formate dehydrogenase from Methylobacterium extorquens AM1: purification and properties, FEBS J., 270, 325, 10.1046/j.1432-1033.2003.03391.x
Worm, 2011, Growth- and substrate-dependent transcription of formate dehydrogenase and hydrogenase coding genes in Syntrophobacter fumaroxidans and Methanospirillum hungatei, Microbiology, 157, 280, 10.1099/mic.0.043927-0
Yagi, 1979, Purification and properties of cytochrome c-553, an electron acceptor for formate dehydrogenase of Desulfovibrio vulgaris, Miyazaki, BBA, 548, 96
Yoch, 1969, Nicotinamide adenine dinucleotide-dependent formate dehydrogenase from Rhodopseudomonas palustris, Arch. Mikrobiol., 182-&, 10.1007/BF00409684
Larimer, 2004, Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris, Nat. Biotechnol., 22, 55, 10.1038/nbt923
Hendrickson, 2004, Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis, J. Bacteriol., 186, 6956, 10.1128/JB.186.20.6956-6969.2004