Aspergillus strain typing in the genomics era

Studies in Mycology - Tập 59 - Trang 47-51 - 2007
C.H.W. Klaassen1, N. Osherov2
1Department of Medical Microbiology and Infectious Diseases, Canisius Wilhelmina Hospital, Nijmegen, The Netherlands
2Department of Human Microbiology, Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel

Tài liệu tham khảo

Bain, 2007, Multilocus sequence typing of the pathogenic fungus Aspergillus fumigatus, Journal of Clinical Microbiology, 45, 1469, 10.1128/JCM.00064-07 Balajee, 2007, Characterization of a novel gene for strain typing reveals substructuring of Aspergillus fumigatus across North America, Eukaryotic Cell, 6, 1392, 10.1128/EC.00164-07 Bart-Delabesse, 1998, Microsatellite markers for typing Aspergillus fumigatus isolates, Journal of Clinical Microbiology, 36, 2413, 10.1128/JCM.36.9.2413-2418.1998 Bikandi, 2004, In silico analysis of complete bacterial genomes: PCR, AFLP-PCR and endonuclease restriction, Bioinformatics, 20, 798, 10.1093/bioinformatics/btg491 Girardin, 1993, Development of DNA probes for fingerprinting Aspergillus fumigatus, Journal of Clinical Microbiology, 31, 1547, 10.1128/JCM.31.6.1547-1554.1993 Gravekamp, 1998, Deletion of repeats in the Alpha C protein enhances the pathogenicity of group B Streptococci in immune mice, Infection & Immunity, 66, 4347, 10.1128/IAI.66.9.4347-4354.1998 Jordan, 2003, Diversity in coding tandem repeats in related Neisseria spp, BMC Microbiology, 3, 23, 10.1186/1471-2180-3-23 Lasker, 2002, Evaluation of performance of four genotypic methods for studying the genetic epidemiology of Aspergillus fumigatus isolates, Journal of Clinical Microbiology, 40, 2886, 10.1128/JCM.40.8.2886-2892.2002 Levdansky, 2007, Coding tandem repeats generate diversity in Aspergillus fumigatus genes, Eukaryotic Cell, 6, 1380, 10.1128/EC.00229-06 Li, 2004, Microsatellites Within Genes: Structure, Function, and Evolution, Molecular Biology and Evolution, 21, 991, 10.1093/molbev/msh073 de Ruiter, 2007, Retrotransposon insertion-site context (RISC) typing: a novel typing method for Aspergillus fumigatus and a convenient PCR alternative to restriction fragment length polymorphism analysis, Journal of Microbiological Methods, 70, 528, 10.1016/j.mimet.2007.06.009 Shopsin, 1999, Evaluation of protein A gene polymorphic region DNA sequencing for typing of Staphylococcus aureus strains, Journal of Clinical Microbiology, 37, 3556, 10.1128/JCM.37.11.3556-3563.1999 Tu, 1998, The influence of fluorescent dye structure on the electrophoretic mobility of end-labeled DNA, Nucleic Acids Research, 26, 2797, 10.1093/nar/26.11.2797 Vainer, 1997, Short tandem repeat typing by capillary array electrophoresis: comparison of sizing accuracy and precision using different buffer systems, Genomics, 41, 1, 10.1006/geno.1997.4608 de Valk, 2005, Use of a novel panel of nine short tandem repeats for exact and high-resolution fingerprinting of Aspergillus fumigatus isolates, Journal of Clinical Microbiology, 43, 4112, 10.1128/JCM.43.8.4112-4120.2005 de Valk, 2007, Microsatellite based typing of Aspergillus fumigatus: strengths, pitfalls and solutions, Journal of Microbiological Methods, 69, 268, 10.1016/j.mimet.2007.01.009 de Valk, 2007, Comparison of two highly discriminatory molecular fingerprinting assays for analysis of multiple Aspergillus fumigatus isolates from patients with invasive aspergillosis, Journal of Clinical Microbiology, 45, 1415, 10.1128/JCM.02423-06 Varga, 2006, Molecular typing of aspergilli: Recent developments and outcomes, Medical Mycology, 44, 149, 10.1080/13693780600823266 Verstrepen, 2005, Intragenic tandem repeats generate functional variability, Nature Genetics, 37, 986, 10.1038/ng1618 Vos, 1995, AFLP: a new technique for DNA fingerprinting, Nucleic Acids Research, 23, 4407, 10.1093/nar/23.21.4407 Warris, 2003, Molecular epidemiology of Aspergillus fumigatus isolates recovered from water, air, and patients shows two clusters of genetically distinct strains, Journal of Clinical Microbiology, 41, 4101, 10.1128/JCM.41.9.4101-4106.2003