Arsenic shapes the microbial community structures in tungsten mine waste rocks
Tài liệu tham khảo
Alquethamy Saleh, 2021, The molecular basis of acinetobacter baumannii cadmium toxicity and resistance, Appl. Environ. Microbiol., 87, e01718
Arroyo-Herrera, 2021, Heavy-metal resistance mechanisms developed by bacteria from Lerma–Chapala basin, Arch. Microbiol., 203, 1807, 10.1007/s00203-020-02140-2
Banerjee, 2018, Keystone taxa as drivers of microbiome structure and functioning, Nat. Rev. Microbiol., 16, 567, 10.1038/s41579-018-0024-1
Barabanov, 1971, Geochemistry of tungsten, Int. Geol. Rev., 13, 332, 10.1080/00206817109475439
Blazevic, 2019, Biotransformation of scheelite CaWO4 by the extreme thermoacidophile Metallosphaera sedula: tungsten microbial interface, Front. Microbiol., 10, 1492, 10.3389/fmicb.2019.01492
Bokulich, 2013, Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing, Nat. Methods, 10, 57, 10.1038/nmeth.2276
Brady, 2016, Comparison of partial extraction reagents for assessing potential bioavailability of heavy metals in sediments, Mar. Pollut. Bull., 106, 329, 10.1016/j.marpolbul.2016.03.029
Brown, 2022, Nutrient (C, N and P) enrichment induces significant changes in the soil metabolite profile and microbial carbon partitioning, Soil Biol. Biochem., 172, 10.1016/j.soilbio.2022.108779
Castro-Gomes, 2012, Potential for reuse of tungsten mining waste-rock in technical-artistic value added products, J. Clean. Prod., 25, 34, 10.1016/j.jclepro.2011.11.064
Chen, 2022, Organoarsenical tolerance in Sphingobacterium wenxiniae, a bacterium isolated from activated sludge, Environ. Microbiol., 24, 762, 10.1111/1462-2920.15599
Chen
Chu Ngoc, 2009, Arsenic and heavy metal concentrations in agricultural soils around tin and tungsten mines in the Dai Tu district, N. Vietnam. Water, Air, and Soil Pollution, 197, 75, 10.1007/s11270-008-9792-y
Chung, 2019, Tailings microbial community profile and prediction of its functionality in basins of tungsten mine, Sci. Rep., 9, 10.1038/s41598-019-55706-6
Delgado-Baquerizo, 2020, Multiple elements of soil biodiversity drive ecosystem functions across biomes, Nat. Ecol. Evol., 4, 210, 10.1038/s41559-019-1084-y
De Marco, 2004, Novel pollutant-resistant methylotrophic bacteria for use in bioremediation, FEMS (Fed. Eur. Microbiol. Soc.) Microbiol. Lett., 234, 75, 10.1111/j.1574-6968.2004.tb09515.x
de Menezes, 2015, Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters, Environ. Microbiol., 17, 2677, 10.1111/1462-2920.12559
Dong, 2020, Contributions of microbial “contact leaching” to pyrite oxidation under different controlled redox potentials, Minerals, 10, 856, 10.3390/min10100856
Drewniak, 2013, Structural and functional genomics of plasmid pSinA of Sinorhizobium sp. M14 encoding genes for the arsenite oxidation and arsenic resistance, J. Biotechnol., 164, 479, 10.1016/j.jbiotec.2013.01.017
Dubos, 2014, Integrating bioinformatic resources to predict transcription factors interacting with cis-sequences conserved in co-regulated genes, BMC Genom., 15, 317, 10.1186/1471-2164-15-317
Fan, 2018, Wheat rhizosphere harbors a less complex and more stable microbial co-occurrence pattern than bulk soil, Soil Biol. Biochem., 125, 251, 10.1016/j.soilbio.2018.07.022
Fazi, 2016, The arsenite oxidation potential of native microbial communities from arsenic-rich freshwaters, Microb. Ecol., 72, 25, 10.1007/s00248-016-0768-y
Fisher, 2014, Identifying keystone species in the human gut microbiome from metagenomic timeseries using sparse linear regression, PLoS One, 9, 10.1371/journal.pone.0102451
Guo, 2020, Microbial communities responded to tetracyclines and Cu(II) in constructed wetlands microcosms with Myriophyllum aquaticum, Ecotoxicol. Environ. Saf., 205, 10.1016/j.ecoenv.2020.111362
Herren, 2018, Keystone taxa predict compositional change in microbial communities, Environ. Microbiol., 20, 2207, 10.1111/1462-2920.14257
Jiang, 2021, Characterizations of heavy metal contamination, microbial community, and resistance genes in a tailing of the largest copper mine in China, Environ. Pollut., 280, 10.1016/j.envpol.2021.116947
Jiku, 2022, Soil ridge cultivation maintains grain As and Cd at low levels and inhibits As methylation by changing arsM-harboring bacterial communities in paddy soils, J. Hazard Mater., 429, 10.1016/j.jhazmat.2022.128325
Johannesson, 1997, Oxyanion concentrations in Eastern Sierra Nevada Rivers – 2. Arsenic and phosphate, Aquat. Geochem., 3, 61, 10.1023/A:1009640008497
Kim, 2021, Diversity and composition of soil Acidobacteria and Proteobacteria communities as a bacterial indicator of past land-use change from forest to farmland, Sci. Total Environ., 797, 10.1016/j.scitotenv.2021.148944
Kuczynski, 2011, Using QIIME to analyze 16S rRNA gene sequences from microbial communities, Curr. Protocols Bioinf., 10.1002/0471250953.bi1007s36
Langille, 2013, Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences, Nat. Biotechnol., 31, 814, 10.1038/nbt.2676
Lee, 2015, Bioleaching of arsenic from highly contaminated mine tailings using Acidithiobacillus thiooxidans, J. Environ. Manag., 147, 124, 10.1016/j.jenvman.2014.08.019
Li, 2022, Serratia spp. are responsible for nitrogen fixation fueled by As(III) oxidation, a novel biogeochemical process identified in mine tailings, Environ. Sci. Technol., 56, 2033, 10.1021/acs.est.1c06857
Li, 2021, Adaptation mechanisms of arsenic metabolism genes and their host microorganisms in soils with different arsenic contamination levels around abandoned gold tailings, Environ. Pollut., 291, 10.1016/j.envpol.2021.117994
Li, 2022, The composition, biotic network, and assembly of plastisphere protistan taxonomic and functional communities in plastic-mulching croplands, J. Hazard. Mater., 430, 10.1016/j.jhazmat.2022.128390
Lim, 2009, Leachability of arsenic and heavy metals from mine tailings of abandoned metal mines, Int. J. Environ. Res. Publ. Health, 6, 2865, 10.3390/ijerph6112865
Lin, 2017, Effect of pH on the release of heavy metals from stone coal waste rocks, Int. J. Miner. Process., 165, 1, 10.1016/j.minpro.2017.05.001
Lin, 2022, Characterization of heavy metal migration, the microbial community, and potential bioremediating genera in a waste-rock pile field of the largest copper mine in Asia, J. Clean. Prod., 351, 10.1016/j.jclepro.2022.131569
Liu, 2010, Arsenic contamination and potential health risk implications at an abandoned tungsten mine, southern China, Environ. Pollut., 158, 820, 10.1016/j.envpol.2009.09.029
Liu, 2020, Comprehensive treatments of tungsten slags in China: a critical review, J. Environ. Manag., 270, 10.1016/j.jenvman.2020.110927
Liu, 2019, Response of microbial communities and interactions to thallium in contaminated sediments near a pyrite mining area, Environ. Pollut., 248, 916, 10.1016/j.envpol.2019.02.089
Luo, 2012, Lysobacter arseniciresistens sp. nov., an arsenite-resistant bacterium isolated from iron-mined soil, Int. J. Syst. Evol. Microbiol., 62, 1659, 10.1099/ijs.0.034405-0
Madrova, 2018, A short-term response of soil microbial communities to cadmium and organic substrate amendment in long-term contaminated soil by toxic elements, Front. Microbiol., 9, 2807, 10.3389/fmicb.2018.02807
Magoč, 2011, FLASH: fast length adjustment of short reads to improve genome assemblies, Bioinformatics, 27, 2957, 10.1093/bioinformatics/btr507
Noormohamed, 2013, Arsenic resistance and prevalence of arsenic resistance genes in Campylobacter jejuni and Campylobacter coli isolated from retail meats, Int. J. Environ. Res. Publ. Health, 10, 3453, 10.3390/ijerph10083453
Paine, 1995, A conversation on refining the concept of keystone species, Conserv. Biol., 9, 962, 10.1046/j.1523-1739.1995.09040962.x
Park, 2021, Distribution and speciation of Sb and toxic metal(loid)s near an antimony refinery and their effects on indigenous microorganisms, J. Hazard Mater., 403, 10.1016/j.jhazmat.2020.123625
Patel, 2007, Arsenate detoxification in a Pseudomonad hypertolerant to arsenic, Arch. Microbiol., 187, 171, 10.1007/s00203-006-0182-9
Pereira, 2015, Assessment of rhizospheric culturable bacteria of Phragmites australis and Juncus effusus from polluted sites, J. Basic Microbiol., 55, 1179, 10.1002/jobm.201500010
Pratas, 2005, Plants growing in abandoned mines of Portugal are useful for biogeochemical exploration of arsenic, antimony, tungsten and mine reclamation, J. Geochem. Explor., 85, 99, 10.1016/j.gexplo.2004.11.003
Prodan, 2020, Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing, PLoS One, 15, 10.1371/journal.pone.0227434
Ramli, 2022, Isolation and characterization of As (V)-reducing Bacillus sp. Strain SM-B1 from Arsenic Laden Gold Mine in Malaysia, Geomicrobiol. J., 39, 577, 10.1080/01490451.2022.2054031
Rauret, 1999, Improvement of the BCR three step sequential extraction procedure prior to the certification of new sediment and soil reference materials, J. Environ. Monit., 1, 57, 10.1039/a807854h
Scapin, 2015, Mechanical characterization and modeling of the heavy tungsten alloy IT180, Int. J. Refract. Metals Hard Mater., 50, 258, 10.1016/j.ijrmhm.2015.01.018
Shi, 2016, The interconnected rhizosphere: high network complexity dominates rhizosphere assemblages, Ecol. Lett., 19, 926, 10.1111/ele.12630
Sun, 2022, Desulfurivibrio spp. mediate sulfur-oxidation coupled to Sb(V) reduction, a novel biogeochemical process, ISME J., 16, 1547, 10.1038/s41396-022-01201-2
Tabelin, 2018, Arsenic, selenium, boron, lead, cadmium, copper, and zinc in naturally contaminated rocks: a review of their sources, modes of enrichment, mechanisms of release, and mitigation strategies, Sci. Total Environ., 645, 1522, 10.1016/j.scitotenv.2018.07.103
Taleski, 2020, Bacterial and fungal diversity in the lorandite (TlAsS2) mine ‘Allchar’ in the Republic of North Macedonia, FEMS (Fed. Eur. Microbiol. Soc.) Microbiol. Ecol., 96, 9
Wang, 2021, Microorganisms for ammonia/ammonium-oxidization and anammox in high arsenic Holocene-Pleistocene aquifers, Int. Biodeterior. Biodegrad., 157, 10.1016/j.ibiod.2020.105136
Wang, 2022, Unraveling diverse survival strategies of microorganisms to vanadium stress in aquatic environments, Water Res., 221, 10.1016/j.watres.2022.118813
Wu, 2016, Does arsenic play an important role in the soil microbial community around a typical arsenic mining area?, Environ. Pollut., 213, 949, 10.1016/j.envpol.2016.03.057
Wu, 2020, Effects of heavy metals on the bioaccumulation, excretion and gut microbiome of black soldier fly larvae (Hermetia illucens), Ecotoxicol. Environ. Saf., 192, 10.1016/j.ecoenv.2020.110323
Xiao, 2016, Microbial diversity and community structure in an antimony-rich tailings dump, Appl. Microbiol. Biotechnol., 100, 7751, 10.1007/s00253-016-7598-1
Xiao, 2017, Depth-resolved microbial community analyses in two contrasting soil cores contaminated by antimony and arsenic, Environ. Pollut., 221, 244, 10.1016/j.envpol.2016.11.071
Xiao, 2021, Thallium shifts the bacterial and fungal community structures in thallium mine waste rocks, Environ. Pollut., 268, 10.1016/j.envpol.2020.115834
Xiao, 2021, Soil bacterial community functions and distribution after mining disturbance, Soil Biol. Biochem., 157, 10.1016/j.soilbio.2021.108232
Xu, 2021, Current knowledge from heavy metal pollution in Chinese smelter contaminated soils, health risk implications and associated remediation progress in recent decades: a critical review, J. Clean. Prod., 286, 10.1016/j.jclepro.2020.124989
Xu, 2022, Soil nutrients and nutrient ratios influence the ratios of soil microbial biomass and metabolic nutrient limitations in mountain peatlands, Catena, 218, 10.1016/j.catena.2022.106528
Yang, 2005, Novel pathway for arsenic detoxification in the legume symbiont Sinorhizobium meliloti, J. Bacteriol., 187, 6991, 10.1128/JB.187.20.6991-6997.2005
Yin, 2007, Comparison of microbial communities in three different mine drainages and their bioleaching efficiencies to low grade of chalcopyrite, J. Cent. S. Univ. Technol., 14, 460, 10.1007/s11771-007-0090-4
Zhang, 2021, Bacterial response to soil property changes caused by wood ash from wildfire in forest soils around mining areas: relevance of bacterial community composition, carbon and nitrogen cycling, J. Hazard Mater., 412, 10.1016/j.jhazmat.2021.125264
Zeng, 1986, A study on the occurrence of dispersed tungsten and comprehensive utilization of useful elements in Mount Lotos, Guangdong, Contrib. Geol. Miner. Resour. Res., 2, 36
Zhou, 2022, Predicting the abundance of metal resistance genes in subtropical estuaries using amplicon sequencing and machine learning, Ecotoxicol. Environ. Saf., 241, 10.1016/j.ecoenv.2022.113844