Are Poultry or Wild Birds the Main Reservoirs for Avian Influenza in Bangladesh?

AAHL (2014) Molecular Diagnosis at CSIRO Animal, Food and Health Science-Nucleic acid detection for disease diagnosis and emergency disease investigation- H5, H9 TaqManR Assays-AAHL Regional Programme, December, 2014

Adlhoch C, Gossner C, Koch G, Brown I, Bouwstra R, Verdonck F, et al. (2014) Comparing introduction to Europe of highly pathogenic avian influenza viruses A(H5N8) in 2014 and A(H5N1) in 2005. Eurosurveillance. doi: 10.2807/1560-7917.ES2014.19.50.20996

Bahl J, Pham TT, Hill NJ, Hussein ITM, Ma EJ, Easterday BC, et al. (2016) Ecosystem interactions underlie the spread of avian influenza A viruses with pandemic potential. PLOS Pathogens 12:e1005620. doi: 10.1371/journal.ppat.1005620

Basler CF, García-Sastre A, Palese P (1999) Mutation of neuraminidase cysteine residues yields temperature-sensitive influenza viruses. Journal of Virology 73:8095–8103

Bates D, Mächler M, Bolker B, Walker S (2015) Fitting linear mixed-effects models using lme4. Journal of Statistical Software 67:48. doi: 10.18637/jss.v067.i01

Bevins SN, Dusek RJ, White CL, Gidlewski T, Bodenstein B, Mansfield KG, et al. (2016) Widespread detection of highly pathogenic H5 influenza viruses in wild birds from the Pacific Flyway of the United States. Scientific Reports 6:28980. doi: 10.1038/srep28980

Biswas PK, Islam MZ, Debnath NC, Yamage M (2014) Modeling and roles of meteorological factors in outbreaks of highly pathogenic avian influenza H5N1. PLoS ONE 9:e98471. doi: 10.1371/journal.pone.0098471

Brown JD, Stallknecht DE, Berghaus RD, Luttrell MP, Velek K, Kistler W, et al. (2009) Evaluation of a commercial blocking enzymelinked immunosorbent assay to detect avian influenza virus antibodies in multiple experimentally infected avian species. Clinical and Vaccine Immunology 16:824–829

Cappelle J, Zhao D, Gilbert M, Nelson MI, Newman SH, Takekawa JY, et al. (2014) Risks of avian influenza transmission in areas of intensive free-ranging duck production with wild waterfowl. EcoHealth 11:109–119. doi: 10.1007/s10393-014-0914-2

Caron A, Cappelle J, Gaidet N (2016) Challenging the conceptual framework of maintenance hosts for influenza A viruses in wild birds. Journal of Applied Ecology. doi: 10.5061/dryad.58g12

Chowell G, Simonsen L, Towers S, Miller MA, Viboud C (2013) Transmission potential of influenza A/H7N9, February to May 2013, China. BMC Medicine 11:214. doi: 10.1186/1741-7015-11-214

Curran JM, Ellis TM, Robertson ID (2015) Serological surveillance of wild waterfowl in Northern Australia for avian influenza virus shows variations in prevalence and a cyclical periodicity of infection. Avian Diseases 59:492–497. doi: 10.1637/11113-043015-Reg

Druce J, Garcia K, Tran T, Papadakis G, Birch C (2012) Evaluation of swabs, transport media, and specimen transport conditions for optimal detection of viruses by PCR. Journal of Clinical Microbiology 50:1064–1065. doi: 10.1128/JCM.06551-11

Ellis TM, Dyrting KC, Wong CW, Chadwick B, Chan C, Chiang M, et al. (2009) Analysis of H5N1 avian influenza infections from wild bird surveillance in Hong Kong from January 2006 to October 2007. Avian Pathology 38:107–119. doi: 10.1080/03079450902751855

FAO (2015) H5N1, H7N9 and beyond: FAO investigates avian influenza virus diversity, geographical spread and risks at the human–animal interface. http://www.fao.org/ag/againfo/programmes/en/empres/news_170315b.html

Fereidouni SR, Grund C, Hauslaigner R, Lange E, Wilking H, Harder TC, et al. (2010) Dynamics of specific antibody responses induced in mallards after infection by or immunization with low pathogenicity avian influenza viruses. Avian Diseases 54:79–85. doi: 10.1637/9005-073109-Reg.1

Fuller TL, Saatchi SS, Curd EE, Toffelmier E, Thomassen HA, Buermann W, et al. (2010) Mapping the risk of avian influenza in wild birds in the US. BMC Infectious Diseases 10:187. doi: 10.1186/1471-2334-10-187

Gilbert M, Golding N, Zhou H, Wint GRW, Robinson TP, Tatem AJ, et al. (2014) Predicting the risk of avian influenza A H7N9 infection in live-poultry markets across Asia. Nature Communications. doi: 10.1038/ncomms5116

Gilbert M, Pfeiffer DU (2012) Risk factor modelling of the spatio-temporal patterns of highly pathogenic avian influenza (HPAIV) H5N1: a review. Spatial and Spatio-temporal Epidemiology 3:173–183. doi: 10.1016/j.sste.2012.01.002

Heine HG, Trinidad L, Selleck P, Lowther S (2007) Rapid detection of highly pathogenic avian influenza H5N1 virus by TaqMan reverse transcriptase–polymerase chain reaction. Avian Diseases 51:370–372. doi: 10.1637/7587-040206R.1

Hoque MA (2011) Risk of Spill-Over of Diseases (in Particular Avian Influenza) from Wild Aquatic Birds in North Queensland. Townsville City: James Cook University

Hoque MA, Burgess GW, Cheam AL, Skerratt LF (2015) Epidemiology of avian influenza in wild aquatic birds in a biosecurity hotspot, North Queensland, Australia. Preventive Veterinary Medicine 118:169–181. doi: 10.1016/j.prevetmed.2014.11.009

Hothorn T, Bretz F, Westfall P (2008) Simultaneous inference in general parametric models. Biometrical Journal 50:346–363. doi: 10.1002/bimj.200810425

Hoye BJ, Munster VJ, Nishiura H, Fouchier RAM, Madsen J, Klaassen M (2011) Reconstructing an annual cycle of interaction: natural infection and antibody dynamics to avian influenza along a migratory flyway. Oikos 120:748–755. doi: 10.1111/j.1600-0706.2010.18961.x

Hoye BJ, Munster VJ, Nishiura H, Klaassen M, Fouchier RAM (2010) Surveillance of wild birds for avian influenza virus. Emerging Infectious Diseases 16:1827–1834. doi: 10.3201/eid1612.100589

Keawcharoen J, van den Broek J, Bouma A, Tiensin T, Osterhaus ADME, Heesterbeek H (2011) Wild birds and increased transmission of highly pathogenic avian influenza (H5N1) among Poultry, Thailand. Emerging Infectious Diseases 17:1016–1022. doi: 10.3201/eid1705.100880

Khan SU, Berman L, Haider N, Gerloff N, Rahman MZ, Shu B, et al. (2014) Investigating a crow die-off in January–February 2011 during the introduction of a new clade of highly pathogenic avian influenza virus H5N1 into Bangladesh. Archives of Virology 159:509–518. doi: 10.1007/s00705-013-1842-0

Kim J-K, Negovetich NJ, Forrest HL, Webster RG (2009) Ducks: the “Trojan Horses” of H5N1 influenza. Influenza and Other Respiratory Viruses 3:121–128. doi: 10.1111/j.1750-2659.2009.00084.x

Koul S, Sahi DN (2013) Feeding ecology of house crow (Corvus splendens) in open agricultural fields in Jammu (J&K), India. International Research Journal of Environment Sciences 2:85–87

Lebarbenchon C, Feare CJ, Renaud F, Thomas F, Gauthier-Clerc M (2010) Persistence of highly pathogenic avian influenza viruses in natural ecosystems. Emerging Infectious Diseases 16:1057–1062. doi: 10.3201/eid1607.090389

Li Y, Liu L, Zhang Y, Duan Z, Tian G, Zeng X, et al. (2011) New avian influenza virus (H5N1) in wild birds, Qinghai, China. Emerging Infectious Diseases 17:265–267. doi: 10.3201/eid1702.100732

Newman SH, Hill NJ, Spragens KA, Janies D, Voronkin IO, Prosser DJ, et al. (2012) Eco-virological approach for assessing the role of wild birds in the spread of avian influenza H5N1 along the central asian flyway. PLoS ONE 7:e30636. doi: 10.1371/journal.pone.0030636

Nishiura H, Hoye B, Klaassen M, Bauer S, Heesterbeek H (2009) How to find natural reservoir hosts from endemic prevalence in a multi-host population: a case study of influenza in waterfowl. Epidemics 1:118–128. doi: 10.1016/j.epidem.2009.04.002

Olsen B, Munster VJ, Wallensten A, Waldenstrom J, Osterhaus AD, Fouchier RA (2006) Global patterns of influenza a virus in wild birds. Science 312:384–388. doi: 10.1126/science.1122438

Peiris JS, de Jong MD, Guan Y (2007) Avian influenza virus (H5N1): a threat to human health. Clinical Microbiology Reviews 20:243–267. doi: 10.1128/cmr.00037-06

Prosser DJ, Hungerford LL, Erwin RM, Ottinger MA, Takekawa JY, Ellis EC (2013) Mapping avian influenza transmission risk at the interface of domestic poultry and wild birds. Frontiers in Public Health 1:28. doi: 10.3389/fpubh.2013.00028

Samantha JL, Rogier B, Anne P, Jill B, Krisztián Bányai, Maciej F. Boni, et al. (2016) Role for migratory wild birds in the global spread of avian influenza H5N8. Science 354:213

Shanbhag AP, Ishita G, Umakanth B (2012) Interspecific behavioral studies of house crows (Corvus splendens protegatus) and jungle crows (Corvus macrorhynchos culminatus) on mutual foraging sites. Global Journal of Environmental Research 6:11–16

Si Y, de Boer WF, Gong P (2013) Different environmental drivers of highly pathogenic avian influenza H5N1 outbreaks in poultry and wild birds. Plos ONE. doi: 10.1371/journal.pone.0053362

Tanimura N, Tsukamoto K, Okamatsu M, Mase M, Imada T, Nakamura K, et al. (2006) Pathology of fatal highly pathogenic H5N1 avian influenza virus infection in large-billed crows (Corvus macrorhynchos) during the 2004 outbreak in Japan. Veterinary Pathology 43:500–509. doi: 10.1354/vp.43-4-500

Tian H, Zhou S, Dong L, Van Boeckel TP, Cui Y, Newman SH, et al. (2015) Avian influenza H5N1 viral and bird migration networks in Asia. Proceedings of the National Academy of Sciences 112:172–177. doi: 10.1073/pnas.1405216112

Vandegrift KJ, Sokolow SH, Daszak P, Kilpatrick AM (2010) Ecology of avian influenza viruses in a changing world. Annals of the New York Academy of Sciences 1195:113–128. doi: 10.1111/j.1749-6632.2010.05451.x

Verhagen J, van der Jeugd H, Nolet B, Slaterus R, Kharitonov S, de Vries P, et al. (2015) Wild bird surveillance around outbreaks of highly pathogenic avian influenza A(H5N8) virus in the Netherlands, 2014, within the context of global flyways. Eurosurveillance. doi: 10.2807/1560-7917.ES2015.20.12.21069

Walsh M, Amstislavski P, Greene A, Haseeb M (2016) The landscape epidemiology of seasonal clustering of highly pathogenic avian influenza (H5N1) in domestic poultry in Africa, Europe and Asia. Transboundary and Emerging Diseases. doi: 10.1111/tbed.12537

Webster RG, Bean WJ, Gorman OT, Chambers TM, Kawaoka Y (1992) Evolution and ecology of influenza A viruses. Microbiological Reviews 56:152–179

Wikramaratna PS, Pybus OG, Gupta S (2014) Contact between bird species of different lifespans can promote the emergence of highly pathogenic avian influenza strains. Proceedings of the National Academy of Sciences of the United States of America 111:10767–10772. doi: 10.1073/pnas.1401849111

Zeileis A, Hothorn T (2002) Diagnostic checking in regression relationships. R News 2:7–10