Archaeal Phylogeny: Reexamination of the Phylogenetic Position of Archaeoglohus fulgidus in Light of Certain Composition-induced Artifacts

Achenbach-Richter, 1987, A possible biochemical missing link among archaebacteria, Nature, 327, 348, 10.1038/327348a0

Achenbach-Richter, 1987, Were the original eubacteria thermophiles?, System. Appl. Microbiol., 9, 34, 10.1016/S0723-2020(87)80053-X

Achenbach-Richter, 1988, Rooting the archaebacterial tree: The pivotal role of Thermococcus celer in archaebacterial evolution, System. Appl. Microbiol., 10, 231, 10.1016/S0723-2020(88)80007-9

Biggin, 1983, Buffer gradient gels and 35S label as an aid to rapid DNA sequence determination, Proc. Natl. Acad. Sci. USA, 80, 3963, 10.1073/pnas.80.13.3963

Brosius, 1978, Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli, Proc. Natl. Acad. Sci. USA, 75, 4801, 10.1073/pnas.75.10.4801

Brosius, 1980, Complete nucleotide sequence of a 23S ribosomal RNA gene from Escherichia coli, Proc. Natl. Acad. Sci. USA, 77, 201, 10.1073/pnas.77.1.201

Burggraf, 1991, Methanopyrus kandleri: An archaeal methanogen unrelated to all other known methanogens, System. Appl. Microbiol., 14, 346, 10.1016/S0723-2020(11)80308-5

De Soete, 1983, A least squares algorithm for fitting additive trees to proximity data, Psychometrika, 48, 621, 10.1007/BF02293884

Felsenstein, 1978, Cases in which parsimony or compatibility methods will be positively misleading, System. Zool., 27, 401, 10.2307/2412923

Felsenstein, 1982, Numerical methods for inferring evolutionary. trees, Quart. Rev. Biol., 57, 379, 10.1086/412935

Gupta, 1983, Sequence of the 16S ribosomal RNA Erom Halobacterium volcanii, an archaebacterium, Science, 221, 656, 10.1126/science.221.4611.656

Gutell, 1990, Higher order structural elements in ribosomal RNAs: Pseudoknots and the use of noncanonical pairs, Proc. Natl. Acad. Sci. USA, 87, 663, 10.1073/pnas.87.2.663

Haas, 1990, Genes encoding the 7S RNA and a Ser-tRNA are linked to one of the two rRNA operons in the genome of the extremely thermophilic archaebacterium Methanothermus fervidus, Gene, 90, 51, 10.1016/0378-1119(90)90438-W

Jarsch, 1985, Sequence of the 16S ribosomal RNA gene from Methanococcus vannielii, System. Appl. Microbiol., 6, 54, 10.1016/S0723-2020(85)80011-4

Jarsch, 1985, Sequence of the 23S rRNA gene from the archaebacterium Methanococcus vannielii: evolutionary and functional implications, Molec. Gen. Genet., 200, 305, 10.1007/BF00425441

Jones, 1987, Methanogens and the diversity of archaebacteria, Microbiol. Rev., 51, 135, 10.1128/MMBR.51.1.135-177.1987

Jukes, 1969, Evolution of protein molecules, 21

Kaine, 1989, Genes for the 16S and 5S ribosomal RNAs and the 7S RNA of Pyrodictiium occultum, System. Appl. Microbiol., 12, 8, 10.1016/S0723-2020(89)80035-9

Lane, 1985, Rapid determination of 16S ribosomal RNA sequences for phylogenetic analysis, Proc. Natl. Acad. Sci. USA, 82, 6955, 10.1073/pnas.82.20.6955

Lechner, 1985, The nucleotide sequence of the 16S rRNA gene and flanking regions from Methanobacterium formicicum: On the phylogenetic relationship between methanogenic and halophilic archaebacteria, System. Appl. Microbiol., 6, 157, 10.1016/S0723-2020(85)80049-7

Leffers, 1987, Evolutionary relationships amongst archaebacteria: a comparative study of 23S ribosomal RNA of a sulfur-dependent extreme thermophile, an extreme halophile and a thermophilic methanogen, J. Molec. Biol., 195, 43, 10.1016/0022-2836(87)90326-3

Leinfelder, 1985, The phylogenetic position of the sulfur-dependent archaebacterium Thermoproteus tenax: sequence of the RNA gene, System. Appl. Microbiol., 6, 164, 10.1016/S0723-2020(85)80050-3

Marmur, 1961, A procedure for the isolation of deoxyribonucleic acid from micro-organisms, J. Molec. Biol., 3, 208, 10.1016/S0022-2836(61)80047-8

Messing, 1983, New M13 vectors for cloning, Meth. Enzymol., 101, 20, 10.1016/0076-6879(83)01005-8

Mills, 1979, Structure-independent nucleotide sequence analysis, Proc. Natl. Acad. Sci. USA, 76, 2232, 10.1073/pnas.76.5.2232

Olsen, 1988, The earliest phylogenetic branchings: Comparing rRNA-based evolutionary trees inferred with various techniques, Cold Spring Harbor Symp. Quant. Biol., 52, 825, 10.1101/SQB.1987.052.01.090

Olsen, 1985, Sequence of the 16S rRNA gene from the thermoacidophilic archaebacterium Sulfolobus solfataricus and its evolutionary implications, J. Molec. Evol., 22, 301, 10.1007/BF02115685

Sanger, 1977, DNA sequencing with chain-terminating inhibitors, Proc. Natl. Acad. Sci. USA, 74, 5463, 10.1073/pnas.74.12.5463

Stetter, 1985, Thermoplasma and the thermophilic sulfur-metabolizing archaebacteria, 85

Swofford, 1985

Weisburg, 1989, The Deinococcus-Thermus phylum and the effect of rRNA composition on phylogenetic tree construction, System. Appl. Microbiol., 11, 128, 10.1016/S0723-2020(89)80051-7

Weisburg, 1989, 1989. A phylogenetic analysis of the mycoplasmas: Basis for their classification, J. Bact., 171, 6455, 10.1128/jb.171.12.6455-6467.1989

Wich, 1987, Genes for stable RNA in the extreme thermophile Thermoproteus tenax: introns and transcription signals, EMBO J., 6, 523, 10.1002/j.1460-2075.1987.tb04784.x

Woese, 1987, Bacterial evolution, Microbiol. Rev., 51, 221, 10.1128/MMBR.51.2.221-271.1987

Woese, 1976, A comparison of the 16S ribosomal RNAs from mesophilic and thermophilic bacilli, J. Molec. Evol., 7, 197, 10.1007/BF01731489

Woese, 1983, Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids, Microbiol. Rev., 47, 621, 10.1128/MMBR.47.4.621-669.1983

Woese, 1986, Archaebacterial phylogeny: perspectives on the urkingdoms, System. Appl. Microbiol., 7, 161, 10.1016/S0723-2020(86)80001-7

Woese, 1990, Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya, Proc. Natl. Acad. Sci. USA, 87, 4576, 10.1073/pnas.87.12.4576

Yang, 1985, The phylogeny of archaebacteria, System. Appl. Microbiol., 6, 251, 10.1016/S0723-2020(85)80027-8