Aquatic adaptation and the evolution of smell and taste in whales

Zoological Letters - Tập 1 Số 1 - 2015
Takushi Kishida1, J. G. M. Thewissen2, Takashi Hayakawa3, Hiroo Imai4, Kiyokazu Agata5
1Graduate School of Science, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo, Kyoto 606-8502 Japan ; Present affiliation: Wildlife Research Center, Kyoto University, 2-24 Tanaka Sekiden-cho, Sakyo, Kyoto 606-8203 Japan.
2Department of Anatomy and Neurobiology, Northeast Ohio Medical University, 4209 State Route 44, Rootstown, OH 44272 USA.
3Primate Research Institute, Kyoto University, Kanrin, Inuyama, Aichi 484-8506 Japan ; Japan Society for the Promotion of Science, Kojimachi, Chiyoda, Tokyo 102-0083 Japan.
4Primate Research Institute, Kyoto University, Kanrin, Inuyama, Aichi 484-8506, Japan
5Graduate School of Science, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo, Kyoto 606-8502 Japan.

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Nei M, Niimura Y, Nozawa M. The evolution of animal chemosensory receptor gene repertoires: roles of chance and necessity. Nat Rev Genet. 2008;9:951–63.

Pihlström H. Comparative anatomy and physiology of chemical senses in aquatic mammals. In: Thewissen JGM, Nummela S, editors. Sensory evolution on the threshold: adaptations in secondarily aquatic vertebrates. Berkeley: University of California Press; 2008. p. 95–109.

Hayden S, Bekaert M, Crider TA, Mariani S, Murphy WJ, Teeling EC. Ecological adaptation determines functional mammalian olfactory subgenomes. Genome Res. 2010;20:1–9.

Kishida T, Kubota S, Shirayama Y, Fukami H. The olfactory receptor gene repertoires in secondary-adapted marine vertebrates: evidence for reduction of the functional proportions in cetaceans. Biol Lett. 2007;3:428–30.

McGowen MR, Clark C, Gatesy J. The vestigial olfactory receptor subgenome of odontocete whales: phylogenetic congruence between gene-tree reconciliation and supermatrix methods. Syst Biol. 2008;57:574–90.

Oelschläger HHA, Ridgway SH, Knauth M. Cetacean brain evolution: Dwarf sperm whale (Kogia sima) and common dolphin (Delphinus delphis) - An investigation with high-resolution 3D MRI. Brain Behav Evol. 2010;75:33–62.

Jiang P, Josue J, Li X, Glaser D, Li W, Brand JG, et al. Major taste loss in carnivorous mammals. Proc Natl Acad Sci U S A. 2012;109:4956–61.

Zhou X, Sun F, Xu S, Fan G, Zhu K, Liu X, et al. Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations. Nat Commun. 2013;4:2708.

Nachtigall P, Hall R. Taste reception in the bottlenosed dolphin. Acta Zoologica Fennica. 1984;172:147–8.

Thewissen JGM, George J, Rosa C, Kishida T. Olfaction and brain size in the bowhead whale (Balaena mysticetus). Mar Mamm Sci. 2011;27:282–94.

Kishida T, Thewissen JGM. Evolutionary changes of the importance of olfaction in cetaceans based on the olfactory marker protein gene. Gene. 2012;492:349–53.

Feng P, Zheng J, Rossiter SJ, Wang D, Zhao H. Massive Losses of Taste Receptor Genes in Toothed and Baleen Whales. Genome Biol Evol. 2014;6:1254–65.

Yim H-S, Cho YS, Guang X, Kang SG, Jeong J-Y, Cha S-S, et al. Minke whale genome and aquatic adaptation in cetaceans. Nat Genet. 2014;46:88–92.

Serizawa S, Miyamichi K, Sakano H. One neuron–one receptor rule in the mouse olfactory system. Trends Genet. 2004;20:648–53.

Mombaerts P, Wang F, Dulac C, Chao SK, Nemes A, Mendelsohn M, et al. Visualizing an olfactory sensory map. Cell. 1996;87:675–86.

Kobayakawa K, Kobayakawa R, Matsumoto H, Oka Y, Imai T, Ikawa M, et al. Innate versus learned odour processing in the mouse olfactory bulb. Nature. 2007;450:503–8.

Imai T, Sakano H. Roles of odorant receptors in projecting axons in the mouse olfactory system. Curr Opin Neurobiol. 2007;17:507–15.

Kajitani R, Toshimoto K, Noguchi H, Toyoda A, Ogura Y, Okuno M, et al. Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads. Genome Res. 2014;24:1384–95.

Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, et al. A whole-genome assembly of the domestic cow, Bos taurus. Genome Biol. 2009;10:R42.

Lindblad-Toh K, Garber M, Zuk O, Lin MF, Parker BJ, Washietl S, et al. A high-resolution map of human evolutionary constraint using 29 mammals. Nature. 2011;478:476–82.

Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997;25:3389–402.

Pearson WR, Wood T, Zhang Z, Miller W. Comparison of DNA sequences with protein sequences. Genomics. 1997;46:24–36.

Katoh K, Misawa K, Kuma K, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002;30:3059–66.

Katoh K, Kuma K, Toh H, Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 2005;33:511–8.

Niimura Y, Nei M. Extensive gains and losses of olfactory receptor genes in Mammalian evolution. PLoS ONE. 2007;2:e708.

Ohtsubo Y, Ikeda-Ohtsubo W, Nagata Y, Tsuda M. GenomeMatcher: a graphical user interface for DNA sequence comparison. BMC Bioinform. 2008;9:376.

Tatusova TA, Madden TL. BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett. 1999;174:247–50.

Grus WE, Shi P, Zhang YP, Zhang J. Dramatic variation of the vomeronasal pheromone receptor gene repertoire among five orders of placental and marsupial mammals. Proc Natl Acad Sci U S A. 2005;102:5767–72.

Young JM, Trask BJ. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet. 2007;23:212–5.

Niimura Y, Nei M. Evolutionary dynamics of olfactory and other chemosensory receptor genes in vertebrates. J Hum Genet. 2006;51:505–17.

Glusman G, Bahar A, Sharon D, Pilpel Y, White J, Lancet D. The olfactory receptor gene superfamily: data mining, classification, and nomenclature. Mamm Genome. 2000;11:1016–23.

Hayakawa T, Suzuki-Hashido N, Matsui A, Go Y: Frequent Expansions of the Bitter Taste Receptor Gene Repertoire during Evolution of Mammals in the Euarchontoglires Clade. Mol Biol Evol. 2014;31:2018-2031.

International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature. 2001;409:860–921.

International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Nature. 2004;431:931–45.

Mouse Genome Sequencing Consortium. Initial sequencing and comparative analysis of the mouse genome. Nature. 2002;420:520–62.

Nummela S, Hussain ST, Thewissen JGM. Cranial anatomy of Pakicetidae (Cetacea, Mammalia). J Vertebr Paleontol. 2006;26:746–59.

Bajpai S, Thewissen JGM, Conley RW. Cranial Anatomy of Middle Eocene Remingtonocetus (Cetacea, Mammalia) from Kutch, India. J Paleontol. 2011;85:703–18.

Oka Y, Kobayakawa K, Nishizumi H, Miyamichi K, Hirose S, Tsuboi A, et al. O-MACS, a novel member of the medium-chain acyl-CoA synthetase family, specifically expressed in the olfactory epithelium in a zone-specific manner. Eur J Biochem. 2003;270:1995–2004.

Gussing F, Bohm S. NQO1 activity in the main and the accessory olfactory systems correlates with the zonal topography of projection maps. Eur J Neurosci. 2004;19:2511–8.

Yoshihara Y, Kawasaki M, Tamada A, Fujita H, Hayashi H, Kagamiyama H, et al. OCAM: a new member of the neural cell adhesion molecule family related to zone-to-zone projection of olfactory and vomeronasal axons. J Neurosci. 1997;17:5830–42.

Pacifico R, Dewan A, Cawley D, Guo C, Bozza T. An olfactory subsystem that mediates high-sensitivity detection of volatile amines. Cell Reports. 2012;2:76–88.

Dewan A, Pacifico R, Zhan R, Rinberg D, Bozza T. Non-redundant coding of aversive odours in the main olfactory pathway. Nature. 2013;497:486–9.

Liberles SD, Buck LB. A second class of chemosensory receptors in the olfactory epithelium. Nature. 2006;442:645–50.

Tsuboi A, Miyazaki T, Imai T, Sakano H. Olfactory sensory neurons expressing class I odorant receptors converge their axons on an antero-dorsal domain of the olfactory bulb in the mouse. Eur J Neurosci. 2006;23:1436–44.

Miyamichi K, Serizawa S, Kimura HM, Sakano H. Continuous and Overlapping Expression Domains of Odorant Receptor Genes in the Olfactory Epithelium Determine the Dorsal/Ventral Positioning of Glomeruli in the Olfactory Bulb. J Neurosci. 2005;25:3586–92.

Xu LL, Stackhouse BG, Florence K, Zhang W, Shanmugam N, Sesterhenn IA, et al. PSGR, a novel prostate-specific gene with homology to a G protein-coupled receptor, is overexpressed in prostate cancer. Cancer Res. 2000;60:6568–72.

Weng J, Wang J, Hu X, Wang F, Ittmann M, Liu M. PSGR2, a novel G-protein coupled receptor, is overexpressed in human prostate cancer. Int J Cancer. 2006;118:1471–80.

Thewissen JGM, Cooper LN, George JC, Bajpai S. From Land to Water: the Origin of Whales, Dolphins, and Porpoises. Evo Edu Outreach. 2009;2:272–88.

Thewissen JGM, Williams EM, Roe LJ, Hussain ST. Skeletons of terrestrial cetaceans and the relationship of whales to artiodactyls. Nature. 2001;413:277–81.

Thewissen JGM, Nummela S. Sensory evolution in aquatic tetrapods: toward and integrative approach. In: Thewissen JGM, Nummela S, editors. Sensory biology on the threshold: Adaptations in secondarily aquatic vertebrates. Berkeley: University of California Press; 2008. p. 333–40.

Godfrey SJ, Geisler J, Fitzgerald EMG. On the Olfactory Anatomy in an Archaic Whale (Protocetidae, Cetacea) and the Minke Whale Balaenoptera acutorostrata (Balaenopteridae, Cetacea). Anat Rec. 2013;296:257–72.

Shi P, Zhang J. Comparative genomic analysis identifies an evolutionary shift of vomeronasal receptor gene repertoires in the vertebrate transition from water to land. Genome Res. 2007;17:166–74.

Ohara H, Nikaido M, Date-Ito A, Mogi K, Okamura H, Okada N, et al. Conserved repertoire of orthologous vomeronasal type 1 receptor genes in ruminant species. BMC Evol Biol. 2009;9:233.

Wong GT, Gannon KS, Margolskee RF. Transduction of bitter and sweet taste by gustducin. Nature. 1996;381:796–800.

Spaulding M, O'Leary MA, Gatesy J. Relationships of Cetacea (Artiodactyla) among mammals: increased taxon sampling alters interpretations of key fossils and character evolution. PLoS ONE. 2009;4:e7062.

Gatesy J, Geisler JH, Chang J, Buell C, Berta A, Meredith RW, et al. A phylogenetic blueprint for a modern whale. Mol Phylogenet Evol. 2013;66:479–506.

Godfrey SJ. On the olfactory apparatus in the Miocene odontocete Squalodon sp. (Squalodontidae). Comptes Rendus Palevol. 2013;12:519–30.

Simmonds MP. Cetaceans and Marine Debris: The Great Unknown. J Mar Biol. 2012;2012:684279.