Application of tetra primer ARMS-PCR approach for detection of Fusarium graminearum genotypes with resistance to carbendazim

Yiping Hou1, Qingquan Luo2, Changjun Chen1, Mingguo Zhou1
1College of Plant Protection, Nanjing Agricultural University, Nanjing, China
2Shanghai Institute of Landscape Gardening Science, Shanghai, China

Tóm tắt

Từ khóa


Tài liệu tham khảo

Bu Y, Gu ZL, Zhang XD, Zhou GH (2004) A rapid single-tube SNP typing based on tetra-primer PCR amplification. Chin J Biochem Mol Biol 20:252–256

Chen CJ, Yu JJ, Bi CW, Zhang YN, Xu JQ, Wang JX, Zhou MG (2009) Mutations in a β-tubulin confer resistance of Gibberella zeae to benzimidazole fungicides. Phytopathology 99:1403–1411

Chen Y, Zhou MG (2009) Characterization of Fusarium graminearum isolates resistant to both carbendazim and a new fungicide JS399-19. Phytopathology 99:441–446

Chung WH, Ishii H, Nishimura K, Ohshima M, Iwama T, Yoshimatsu H (2008) Genetic analysis and PCR-based identification of major Fusarium species causing head blight on wheat in Japan. J Gen Plant Pathol 74:364–374

Eaves DJ, Liebana E, Woodward MJ, Piddock LJV (2002) Detection of gyrA mutations in quinolone-resistant Salmonella enterica by denaturing high-performance liquid chromatography. J Clin Microbiol 40:4121–4125

Etlik O, Koksal V, Arican-Baris ST, Baris I (2008) An improved tetra-primer PCR approach for the detection of the FGFR3 G380R mutation responsible for achondroplasia. Mol Cell Probes 22:71–75

Garcés-Claver A, Fellman SM, Gil-Ortega R, Jahn M, Arnedo-Andrés MS (2007) Identification, validation and survey of a single nucleotide polymorphism (SNP) associated with pungency in Capsicum spp. Theor Appl Genet 115:907–916

Guan F, Yang LG, An JT, Liu SR, Shi GQ (2005) Development of a rapid mismatch PCR method using tetra-primer ARMS for detection of BMPR-IB gene mutation in sheep. Hereditas 27:579–583

Hou YP, Luo QQ, Chen CJ, Zhou MG (2011) Application of cycleave PCR to the detection of a point mutation (F167Y) in the β2-tubulin gene of Fusarium graminearum. Pest Manag Sci 67:1124–1128

Luo QQ, Xu JQ, Hou YP, Chen CJ, Wang JX, Zhou MG (2009) PIRA-PCR for detection of Fusarium graminearum genotypes with moderate resistance to carbendazim. Plant Pathol 58:882–887

Ma ZH, Michailides TJ (2004) An allele-specific PCR assay for detecting azoxystrobin-resistant Alternaria isolates from pistachio in California. J Phytopathol 152:118–121

Ma ZH, Michailides TJ (2005) Advances in understanding molecular mechanisms of fungicide resistance and molecular detection of resistant genotypes in phytopathogenic fungi. Crop Prot 24:853–863

Ma ZH, Yoshimura MA, Holtz BA, Michailides TJ (2005) Characterization and PCR-based detection of benzimidazole-resistant isolates of Monilinia laxa in California. Pest Manag Sci 61:449–457

Muñoz C, Gómez Talquenca S, Volpe ML (2009) Tetra primer ARMS-PCR for identification of SNP in β-tubulin of Botrytis cinerea, responsible of resistance to benzimidazole. J Microbiol Methods 78:245–246

Nicholson P, Parry DW (1996) Development and use of a PCR assay to detect Rhizoctonia cerealis, the cause of sharp eyespot of wheat. Plant Pathol 45:872–883

Oshima M, Banno S, Okada K, Takeuchi T, Kimura M, Ichiishi A, Yamaguchi I, Fujimura M (2006) Survey of mutations of a histidine kinase gene BcOS1 in dicarboximide-resistant field isolates of Botrytis cinerea. J Gen Plant Pathol 72:65–73

Piddock LJ, Ricci V, McLaren I, Griggs DJ (1998) Role of mutations in the gyrA and parC gene of 196 nalidixic acid-resistant Salmonella serotypes isolated from animals. J Antimicrob Chemother 41:635–642

Saito K, Miyake S, Moriya H, Yamazaki M, Itoh F, Imai K, Kurosawa N, Owada E, Miyamoto A (2003) Detection of the four sequence variations of MDR1 gene using TaqMan-MGB probe based real-time PCR and haplotype analysis in healthy Japanese subjects. Clin Biochem 36:511–518

Saito S, Suzuki S, Takayanagi T (2009) Nested PCR-RFLP is a high-speed method to detect fungicide-resistant Botrytis cinerea at an early growth stage of grapes. Pest Manag Sci 65:197–204

Walker RA, Saunders N, Lawson AJ, Lindsay EA, Dassama M, Ward LR, Woodward MJ, Davies RH, Liebana E, Threlfall EJ (2001) Use of the LightCycler gyrA mutation assay for the rapid identification of mutations conferring decreased susceptibility to ciprofloxacin in multiresistant Salmonella enterica serotype typhimurium DT104 isolates. J Clin Microbiol 39:1443–1448

Yan ZQ, Yang SL, Gong Y (2003) Use of PCR related methods in detection of gene mutation. Hereditas 25:198–200

Yang YG, Kim JY, Park SJ, Kim SW, Jeon OH, Kim DS (2007) Apolipoprotein E genotyping by multiplex tetra-primer amplification refractory mutation system PCR in single reaction tube. J Biotechnol 131:106–110

Ye S, Dhillon S, Ke X, Collins AR, Day INM (2001) An efficient procedure for genotyping single nucleotide polymorphisms. Nucleic Acids Res 29:E88

Yoshimatsu H, Tomimura K, Ishii H, Ookubo H, Nakajima T, Hasama W (2006) Occurrence of resistant strains of Fusarium graminearum and baseline sensitivity of Fusarium avenaceum to thiophanate-methyl. Jpn J Phytopathol 72:32 (Abstract in Japanese)

Zhang YN, Fan PS, Chen CJ, Wang JX, Zhou MG (2009) Monitoring and evolvement of resistance to carbendazim of Fusarium graminearum. Agrochemicals 48:603–605+613

Zirnstein G, Li Y, Swaminathan B, Angulo F (1999) Ciprofloxacin resistance in Campylobacter jejuni isolates: detection of gyrA resistance mutations by mismatch amplification mutation assay PCR and DNA sequence analysis. J Clin Microbiol 37:3276–3280