Anthropogenic and natural disturbance lead to differing patterns of gene flow in the Rocky Mountain tailed frog, Ascaphus montanus

Biological Conservation - Tập 143 - Trang 778-786 - 2010
Stephen F. Spear1, Andrew Storfer1
1School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA

Tài liệu tham khảo

Agee, 1993 Alkaslassy, 2005, Abundance of plethodontid salamanders in relation to coarse woody debris in a low elevation mixed forest of the western Cascades, Northwest Science, 79, 156 Beerli, P., 2008. Migrate version 3.0 – a maximum likelihood and Bayesian estimator of gene flow using the coalescent. <http://www.popgen.scs.fsu.edu/migrate.html>. Beerli, 2001, Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations using a coalescent approach, Proceedings of the National Academy of Sciences, 98, 4563, 10.1073/pnas.081068098 Blaustein, 1994, Amphibian declines: judging stability, persistence, and susceptibility of populations to local and global extinctions, Conservation Biology, 8, 60, 10.1046/j.1523-1739.1994.08010060.x Bowcock, 1994, High resolution of human evolutionary trees with polymorphic microsatellites, Nature, 368, 455, 10.1038/368455a0 Brown, 1975, Temperature and development of the tailed frog, Ascaphus truei, Comparative Biochemistry and Physiology, 50A, 397, 10.1016/0300-9629(75)90033-X Bury, 2004, Wildfire, fuel reduction, and herpetofaunas across diverse landscape mosaics in northwestern forests, Conservation Biology, 18, 968, 10.1111/j.1523-1739.2004.00522.x Busch, 2007, Recent demographic bottlenecks are not accompanied by a genetic signature in banner-tailed kangaroo rats (Dipodomys spectabilis), Molecular Ecology, 16, 2450, 10.1111/j.1365-294X.2007.03283.x Butts, 2000, Associations of forest-floor vertebrates with coarse woody debris in managed forests of western Oregon, The Journal of Wildlife Management, 64, 95, 10.2307/3802978 Cavalli-Sforza, 1967, Phylogenetic analysis: models and estimation procedures, American Journal of Human Genetics, 19, 233 Chapuis, 2007, Microsatellite null alleles and estimation of population differentiation, Molecular Biology and Evolution, 24, 621, 10.1093/molbev/msl191 Claussen, 1973, The water relations of the tailed frog, Ascaphus truei, and the Pacific tree frog, Hyla regilla, Comparative Biochemistry and Physiology, 44A, 155, 10.1016/0300-9629(73)90378-2 Clearwater National Forest, 2001. Clearwater National Forest Streams. Clearwater National Forest, 2008. Clearwater National Forest Large Fire Polygons (10 Acres and Greater) 1900–2008. Corn, 1989, Logging in western Oregon: responses of headwater habitats and stream amphibians, Forest Ecology and Management, 29, 39, 10.1016/0378-1127(89)90055-8 Cornuet, 1996, Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data, Genetics, 144, 2001, 10.1093/genetics/144.4.2001 Curtis, 2003, The genetic structure of coastal giant salamanders (Dicamptodon tenebrosus) in a managed forest, Biological Conservation, 115, 45, 10.1016/S0006-3207(03)00092-2 Dempster, 1977, Maximum likelihood from incomplete data via the EM algorithm, Journal of the Royal Statistical Society B, 39, 1 Dieringer, 2003, Microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets, Molecular Ecology Notes, 3, 167, 10.1046/j.1471-8286.2003.00351.x Dunham, 2007, Influences of wildfire and channel reorganization on spatial and temporal variation in stream temperature and the distribution of fish and amphibians, Ecosystems, 10, 335, 10.1007/s10021-007-9029-8 Foley, 2005, Global consequences of land use, Science, 309, 570, 10.1126/science.1111772 Fotheringham, 2002 Gardner, 2007, Paradox, presumption and pitfalls in conservation biology: the importance of habitat change for amphibians and reptiles, Biological Conservation, 138, 166, 10.1016/j.biocon.2007.04.017 Garza, 2001, Detection of reduction in population size using data from microsatellite loci, Molecular Ecology, 10, 305, 10.1046/j.1365-294x.2001.01190.x Getis, 1995, Local spatial autocorrelation statistics: distributional issues and an application, Geographical Analysis, 27, 286 Goldberg, C.S., Waits, L.P. in press. Quantification and reduction of bias from sampling larvae to infer population and landscape genetic structure. Molecular Ecology Resources. doi: 10.1111/j.1755-0998.2009.02755.x. Goldberg, 2003, From the frog’s mouth: Buccal swabs for collection of DNA from amphibians, Herpetological Review, 34 Goudet, 1995, Fstat version 1.2: a computer program to calculate Fstatistics, Journal of Heredity, 86, 485, 10.1093/oxfordjournals.jhered.a111627 Goudet, J., 2001. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). <http://www.unil.ch/izea/softwares/fstat.html>. Updated from Goudet (1995). Greenberg, 2008, Short-term response of reptiles and amphibians to prescribed fire and mechanical fuel reduction in a southern Appalachian upland hardwood forest, Forest Ecology and Management, 255, 2883, 10.1016/j.foreco.2008.01.064 Healey, 2008, The relative impact of harvest and fire upon landscape-level dynamics of older forests: lessons from the Northwest Forest Plan, Ecosystems, 11, 1106, 10.1007/s10021-008-9182-8 Hedrick, 2005, A standardized genetic differentiation measure, Evolution, 59, 1633, 10.1111/j.0014-3820.2005.tb01814.x Homer, 2004, Development of a 2001 national landcover database for the United States, Photogrammetric Engineering and Remote Sensing, 70, 829, 10.14358/PERS.70.7.829 Homyack, 2009, Long-term effects of experimental forest harvesting on abundance and reproductive demography of terrestrial salamanders, Biological Conservation, 142, 110, 10.1016/j.biocon.2008.10.003 Hossack, 2006, Divergent patterns of abundance and age-class structure of headwater stream tadpoles in burned and unburned watersheds, Canadian Journal of Zoology, 84, 1482, 10.1139/z06-143 Idaho Panhandle National Forest, 2008. Idaho Panhandle National Forests – Fire History Perimeters. Laurance, 2008, Theory meets reality: how habitat fragmentation research has transcended island biogeographic theory, Biological Conservation, 141, 1731, 10.1016/j.biocon.2008.05.011 Lindenmayer, 2002, Congruence between natural and human forest disturbance: a case study from Australian montane ash forests, Forest Ecology and Management, 155, 319, 10.1016/S0378-1127(01)00569-2 Lindenmayer, 2008, A checklist for ecological management of landscapes for conservation, Ecology Letters, 11, 78 Luikart, 1998, Distortion of allele frequency distributions provides a test for recent population bottlenecks, Journal of Heredity, 89, 238, 10.1093/jhered/89.3.238 McCune, 2002, Equations for potential annual direct incident radiation and heat load, Journal of Vegetation Science, 13, 603, 10.1111/j.1654-1103.2002.tb02087.x McRae, 2006, Isolation by resistance, Evolution, 60, 1551, 10.1111/j.0014-3820.2006.tb00500.x McRae, B.H., Shah, V.B., 2009. Circuitscape User Guide. University of California, Santa Barbara. <http://www.circuitscape.org>. Meirmans, 2006, Using the AMOVA framework to estimate a standardized genetic differentiation measure, Evolution, 60, 2399, 10.1554/05-631.1 Morris, 2007, Effects of timber management on pond-breeding salamanders, Journal of Wildlife Management, 71, 1034, 10.2193/2005-469 Naughton, 2000, Long-toed salamanders in harvested and intact Douglas-fir forests of western Montana, Ecological Applications, 10, 1681, 10.1890/1051-0761(2000)010[1681:LTSIHA]2.0.CO;2 Nielson, 2001, Phylogeography of the tailed frog (Ascaphus truei): implications for the biogeography of the Pacific Northwest, Evolution, 55, 147, 10.1111/j.0014-3820.2001.tb01280.x Olson, 2007, Biodiversity management approaches for stream-riparian areas: perspectives for Pacific Northwest headwater forests, microclimates, and amphibians, Forest Ecology and Management, 246, 81, 10.1016/j.foreco.2007.03.053 Pechmann, 1991, Declining amphibian populations: the problem of separating human impacts from natural fluctuations, Science, 253, 892, 10.1126/science.253.5022.892 Pilliod, 2003, Fire and amphibians in North America, Forest Ecology and Management, 178, 163, 10.1016/S0378-1127(03)00060-4 Pilliod, 2004, Effects of wildland fires on stream amphibian populations in the greater Northwest, Northwestern Naturalist, 85, 85 Prugh, 2008, Effect of habitat area and isolation on fragmented animal populations, Proceedings of the National Academy of Sciences, 105, 20770, 10.1073/pnas.0806080105 Rangel, 2006, Towards an integrated computational tool for spatial analysis in macroecology and biogeography, Global Ecology and Biogeography, 15, 321, 10.1111/j.1466-822X.2006.00237.x Raymond, 1995, Genepop (Version 1.2): population genetics software for exact tests and ecumenicism, Journal of Heredity, 86, 248, 10.1093/oxfordjournals.jhered.a111573 Rehfeldt, G.E., 2006. A Spline Model of Climate for the Western United States, General Technical Report RMRS-GTR-165. Department of Agriculture, Forest Service, Rocky Mountain Research Station. Fort Collins, CO, US, 21 p. Ricketts, 2001, The matrix matters: effective isolation in fragmented landscapes, The American Naturalist, 158, 87, 10.1086/320863 Rittenhouse, 2008, The role of microhabitats in the desiccation and survival of anurans in recently harvested oak-hickory forest, Copeia, 2008, 807, 10.1643/CH-07-176 Sanderson, 2002, The human footprint and the last of the wild, Bioscience, 52, 891, 10.1641/0006-3568(2002)052[0891:THFATL]2.0.CO;2 Semlitsch, 2009, Effects of timber harvest on amphibian populations: understanding mechanisms from forest experiments, Bioscience, 59, 853, 10.1525/bio.2009.59.10.7 Spear, S.F., 2009. Landscape Genetics of Habitat Alteration across Multiple Spatial and Temporal Scales in the Anuran Genus Ascaphus. Ph.D. Dissertation, Washington State University. Spear, 2008, Landscape genetic structure of coastal tailed frogs (Ascaphus truei) in protected vs. managed forests, Molecular Ecology, 17, 4642, 10.1111/j.1365-294X.2008.03952.x Spear, 2005, Landscape genetics of the blotched tiger salamander (Ambystoma tigrinum melanostictum), Molecular Ecology, 14, 2553, 10.1111/j.1365-294X.2005.02573.x Spear, 2006, Molecular evidence for historical and recent population size reductions of tiger salamanders (Ambystoma tigrinum) in Yellowstone National Park, Conservation Genetics, 7, 605, 10.1007/s10592-005-9095-4 Spear, 2008, Newly developed polymorphic microsatellite markers for frogs of the genus Ascaphus, Molecular Ecology Resources, 8, 936, 10.1111/j.1755-0998.2008.02123.x Thiollay, 1988, Forest fragmentation and the conservation of raptors: a survey on the island of Java, Biological Conservation, 44, 229, 10.1016/0006-3207(88)90018-3 Thompson, 2003, A review of the long-term effects of post-harvest silviculture on vertebrate wildlife, and predictive models, with an emphasis on boreal forests in Ontario, Canada, Forest Ecology and Management, 177, 441, 10.1016/S0378-1127(02)00453-X Turner, 2003, Surprises and lessons from the 1988 Yellowstone fires, Frontiers in Ecology and the Environment, 1, 351, 10.1890/1540-9295(2003)001[0351:SALFTY]2.0.CO;2 Waldick, 1999, The consequences for amphibians of the conversion of natural, mixed-species forests to conifer plantations in southern New Brunswick, Canadian Field Naturalist, 113, 408 Wang, 2004, Sibship reconstruction from genetic data with typing errors, Genetics, 166, 1963, 10.1534/genetics.166.4.1963 Welsh, 1990, Relictual amphibians and old-growth forests, Conservation Biology, 4, 309, 10.1111/j.1523-1739.1990.tb00293.x Welsh, 2005, Ecogeography of the herpetofauna of a northern California watershed: linking species patterns to landscape processes, Ecography, 28, 521, 10.1111/j.0906-7590.2005.04024.x