Ancestral State Reconstruction of Body Size in the Caniformia (Carnivora, Mammalia): The Effects of Incorporating Data from the Fossil Record

Systematic Biology - Tập 55 Số 2 - Trang 301-313 - 2006
John A. Finarelli1,2, John J. Flynn3
1Committee on Evolutionary Biology, The University of Chicago 1025 E. 57th Street, Chicago, Illinois 60637, USA E-mail: [email protected]
2Department of Geology, The Field Museum 1400 S. Lake Shore Drive, Chicago, Illinois 60605, USA
3Division of Paleontology, American Museum of Natural History Central Park West at 79th Street, New York, New York 10024, USA

Tóm tắt

Từ khóa


Tài liệu tham khảo

Alroy, 1998, Cope's rule and the dynamics of body mass evolution in North American fossil mammals, Science, 280, 731, 10.1126/science.280.5364.731

Alroy J. North American fossil mammal systematics database 2002 http://www.nceas.ucsb.edu/~alroy/nafmsd.html

Baskin, 1998, Mustelidae, Evolution of tertiary mammals of North America, Pages 152

Bininda-Emonds, 1999, Building large trees by combining phylogenetic information: A complete phylogeny of the extant Carnivora (Mammalia), Biol. Rev., 74, 143, 10.1017/S0006323199005307

Cunningham, 1998, Reconstructing ancestral states: A critical reappraisal, Trends Ecol. Evol., 13, 361, 10.1016/S0169-5347(98)01382-2

Davis, 2004, A phylogeny of the extant Phocidae inferred from complete mitochondrial DNA coding regions, Mol. Phylogenet. Evol., 33, 363, 10.1016/j.ympev.2004.06.006

Démére, 2003, Pinnipedimorph evolutionary biogeography, Bull. Am. Mus. Nat. Hist., 279, 32, 10.1206/0003-0090(2003)279<0032:C>2.0.CO;2

Dragoo, 1997, Systematics of mustelid-like carnivores, J. Mammal., 78, 426, 10.2307/1382896

Drummond, 2001, The inference of stepwise changes in substitution rates using serial sequence samples, Mol. Biol. Evol., 18, 1365, 10.1093/oxfordjournals.molbev.a003920

Drummond, 2002, Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data, Genetics, 161, 1307, 10.1093/genetics/161.3.1307

Felsenstein, 1985, Phylogenies and the comparative method, Am. Nat., 125, 1, 10.1086/284325

Flynn, 2005, Molecular phylogeny of the Carnivora (Mammalia): Assessing the impact of increased sampling on resolving enigmatic relationships, Syst. Biol., 54, 317, 10.1080/10635150590923326

Flynn, 1982, Phylogeny of Early Tertiary Carnivora, with a description of a new species of Protictis from the Middle Eocene of Northwestern Wyoming, Am. Mus. Novitates, 2725, 1

Flynn, 1998, Phylogeny of the Carnivora (Mammalia): Congruence vs, incompatibility among multiple data sets. Mol. Phylogenet. Evol., 9, 414, 10.1006/mpev.1998.0504

Flynn, 2000, Whence the red panda?, Mol. Phylogenet. Evol., 17, 190, 10.1006/mpev.2000.0819

Flynn, 2005, Carnivora, Origin, timing, and relationships of the major clades of extant placental mammals, Pages 175

Garland, 1999, Polytomies and phylogenetically independent contrasts: Examination of the bounded degrees of freedom approach, Syst. Biol., 48, 547, 10.1080/106351599260139

Garland, 2000, Using the past to predict the present: Confidence intervals for regression equations in phylogenetic comparative methods, Am. Nat., 155, 346, 10.1086/303327

Garland, 1999, An introduction to phylogenetically based statistical methods, with a new method for confidence intervals on ancestral values, Am. Zool., 39, 374, 10.1093/icb/39.2.374

Gaubert, 2003, Exhaustive sample set among Viverridae reveals the sister-group of felids: The linsangs as a case of extreme morphological convergence within Feliformia, Proc. R. Soc. Lond. B Biol. Sci., 270, 2523, 10.1098/rspb.2003.2521

Ginsburg, 1966, Les amphicyons des Phosporites du Quercy, Ann. Paléontol. (Vert.), 52, 21

Gittleman, 1986, Carnivore brain size, behavioral ecology, and phylogeny, J. Mammal., 67, 23, 10.2307/1380998

Gittleman, 1986, Carnivore life history patterns: Allometric, phylogenetic, and ecological associations, Am. Nat., 127, 744, 10.1086/284523

Gittleman, 1991, Carnivore olfactory bulb size: Allometry, phylogeny and ecology, J. Zool., 225, 253, 10.1111/j.1469-7998.1991.tb03815.x

Gittleman, 1993, Carnivore life histories: A reanalysis in light of new models, Pages 65

Gittleman, 1982, Carnivore home-range size, metabolic needs and ecology, Behav. Ecol. Sociobiol., 10, 57, 10.1007/BF00296396

Gittleman, 1998, Body size and species-richness in carnivores and primates, Proc. R. Soc. Lond. B Biol. Sci., 265, 113, 10.1098/rspb.1998.0271

Gittleman, 1997, Sexual dimorphism in the canines and skulls of carnivores: Effects of size, phylogeny, and behavioral ecology, J. Zool., 242, 97, 10.1111/j.1469-7998.1997.tb02932.x

Harvey, 1994, Phylogenies without fossils, Evolution, 48, 523, 10.1111/j.1558-5646.1994.tb01341.x

Hough, 1948, The auditory region in some members of the Procyonidae, Canidae and Ursidae: Its significane in the phylogeny of the Carnivora, Bull. Am. Mus. Nat. Hist., 92, 67

Hunt, 1974, The auditory bulla in Carnivora: An anatomical basis for reappraisal of carnivore evolution, J. Morphol., 1143, 21, 10.1002/jmor.1051430103

Hunt, 1977, Basicranial anatomy of Cynelos Jourdan (Mammalia: Carnivora), an Aquitanian Amphicyonid from the Allier Basin, France, J. Paleontol., 51, 826

Hunt, 1996, Amphicyonidae, The terrestrial Eocene-Oligocene transition in North America, Pages 476, 10.1017/CBO9780511665431.024

Hunt, 1998, Amphicyondae, Evolution of tertiary mammals of North America, Pages 196

Hunt, 1998, Ursidae, Evolution of tertiary mammals of North America, Pages 174

Kelt, 2001, The ecology and macroecology of mammalian home range size, Am. Nat., 157, 637, 10.1086/320621

Koepfli, 1998, Phylogenetic relationships of otters (Carnivora: Mustelidae) based on mitochondrial cytochrome b sequences, J. Zool., 246, 401, 10.1111/j.1469-7998.1998.tb00172.x

Koepfli, 2003, Type ISTS markers are more informative than cytochrome b in phylogenetic reconstruction of the Mustelidae (Mammalia: Carnivora), Syst. Biol., 52, 571, 10.1080/10635150390235368

Kozlowski, 1997, Interspecific allometries are by-products of body size optimization, Am. Nat., 149, 352, 10.1086/285994

Laurin, 2004, The evolution of body size, Cope's rule and the origin of amniotes, Syst. Biol., 53, 594, 10.1080/10635150490445706

Ledje, 1996, Phylogenetic analyses of complete cytochrome b genes of the order Carnivora with particular emphasis on the Caniformia, J. Mol. Evol., 42, 135, 10.1007/BF02198839

Ledje, 1996, Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene, J. Mol. Evol., 43, 641, 10.1007/BF02202112

Legendre, 1988, Correlation of carnassial tooth size and body weight in Recent carnivores (Mammalia), Hist. Biol., 1, 85, 10.1080/08912968809386468

Lindenfors, 2003, The monophyletic origin of delayed implantation in carnivores and its implications, Evolution, 57, 1952, 10.1111/j.0014-3820.2003.tb00601.x

Maddison, 1991, Squared-change parsimony reconstructions of ancestral statesfor continuous-valued characters on a phylogenetic tree, Syst. Zool., 40, 304, 10.2307/2992324

Maddison, 1995, Calculating the probability distributions of ancestral states reconstructed by parsimony on phylogenetic trees, Syst. Biol., 44, 474, 10.1093/sysbio/44.4.474

Maddison W. P. Maddison D. R. Mesquite: A modular system for evolutionary analysis, version 1.05 2004 http://mesquiteproject.org

Maddison, 2002, TreeFarm: A package of modules for Mesquite, version 1.0

Martins, 1999, Estimation of ancestral states of continuous characters: A computer simulation study, Syst. Biol., 48, 642, 10.1080/106351599260210

Matthew, 1924, Third contribution to the Snake Creek Fauna, Bull. Am. Mus. Nat. Hist., 50, 59

Meiri, 2004, Body size of insular Carnivores: Little Support for the Island Rule, Am. Nat., 163, 469, 10.1086/382229

Meiri, 2004, Carnivores, biases and Bergmann's rule, Biol. J. Linn. Soc., 81, 579, 10.1111/j.1095-8312.2004.00310.x

Midford, 2003, PDAP package (of Mesquite)

NOW database 2003 http://www.helsinki.fi/science/now/index.html. version July 17, 2003

Oakley, 2000, Independent contrasts succeed where ancestor reconstruction fails in a known bacteriophage phylogeny, Evolution, 54, 397, 10.1111/j.0014-3820.2000.tb00042.x

Pagel, 1999, Inferring the historical patterns of biological evolution, Nature, 401, 877, 10.1038/44766

Pagel, 2002, Modelling the evolution of continuously varying characters: The case of hominid cranial capacity, Morphology, shape and phylogeny, Pages 269, 10.1201/9780203165171.ch13

Pagel, 2004, Bayesian rstimation of ancestral character states on phylogenies, Syst. Biol., 53, 673, 10.1080/10635150490522232

Polly, 2001, Paleontology and the comparative method: Ancestral node reconstructins versus observed node values, Am. Nat., 157, 596, 10.1086/320622

Purvis, 1994, Truth or consequences—effects of phylogenetic accuracy on 2 comparative methods, J. Theor. Biol., 167, 293, 10.1006/jtbi.1994.1071

Rambaut, 2000, Estimating the rate of molecular evolution: Incorporating noncontemporaneous sequences into maximum likelihood phylogenies, Bioinformatics, 16, 395, 10.1093/bioinformatics/16.4.395

Salisbury, 2001, Ancestral state estimation and taxon sampling density, Syst. Biol., 50, 557, 10.1080/10635150119819

Sato, 2004, Molecular phylogeny of arctoids (Mammalia: Carnivora) with emphasis on phylogenetic and taxonomic positions of the ferret-badgers and skunks, Zool. Sci., 21, 111, 10.2108/0289-0003(2004)21[111:MPOAMC]2.0.CO;2

Sato, 2003, Phylogenetic relationships and divergence times among mustelids (Mammalia: Carnivora) based on nucleotide sequences of the nuclear interphotoreceptor retinoid binding protein and mitochondrial cytochrome b genes, Zool. Sci., 20, 243, 10.2108/zsj.20.243

Schluter, 1997, Likelihood of ancestor states in adaptive radiation, Evolution, 51, 1699, 10.1111/j.1558-5646.1997.tb05095.x

Schmidt-Nielsen, 1984, Scaling: Why is animal size so important?, 10.1017/CBO9781139167826

Smith, 1994, Systematics and the fossil record, 10.1002/9781444313918

Smith, 2003, Body mass of late Quaternary mammals, Ecology, 84, 3402, 10.1890/02-9003

Smith, 1993, Logarithmic transformation bias in allometry, Am. J. Phys. Anthropol., 90, 215, 10.1002/ajpa.1330900208

Stanley, 1973, An explanation for Cope's rule, Evolution, 27, 1, 10.1111/j.1558-5646.1973.tb05912.x

Swofford, 1987, Reconstructing ancestral character states under Wagner parsimony, Math. Biosci., 87, 199, 10.1016/0025-5564(87)90074-5

Tedford, 1995, Phylogeny of the Caninae (Carnivora: Canidae): The living taxa, Am. Mus. Novitates, 3146, 1

Van Valkenburgh, 1990, Skeletal and dental predictors of body mass in carnivores, Body size in mammalian paleobiology: Estimation and biological implications, Pages 181

Van Valkenburgh, 2004, Cope 's Rule, hypercarnivory, and extinction in North American canids, Science, 306, 101, 10.1126/science.1102417

Veron, 2004, Molecular systematics and origin of sociality in mongooses (Herpestidae, Carnivora), Mol. Phylogenet. Evol., 30, 582, 10.1016/S1055-7903(03)00229-X

Viranta, 1996, European Miocene Amphicyonidae—taxonomy, systematics and ecology, Acta Zool. Fenni., 204, 1

Wang, 1994, Phylogenetic sytematics of the Hesperocyoninae (Carnivora: Canidae), Bull. Am. Mus. Nat. Hist., 221, 1

Wang, 2005, Amphicticeps and Amphicynodon (Arctoidea, Carnivora) from Hsanda Gol Formation, Central Mongolia and phylogeny of Basal Arctoids with comments on zoogeography, Am. Mus. Novitates, 3483, 1, 10.1206/0003-0082(2005)483[0001:AAAACF]2.0.CO;2

Wang, 1999, Phylogenetic sytematics of the Borophaginae (Carnivora: Canidae), Bull. Am. Mus. Nat. Hist., 243, 1

Webster, 2004, The life history legacy of evolutionary body size change in carnivores, J. Evol. Biol., 17, 396, 10.1046/j.1420-9101.2003.00664.x

Webster, 2002, Ancestral states and evolutionary rates of continuous characters, Morphology, shape and Phylogeny, Pages 247, 10.1201/9780203165171.ch12

Webster, 2002, Testing the accuracy of methods for reconstructing ancestral states of continuous characters, Proc. R. Soc. Lond. B Biol. Sci., 269, 143, 10.1098/rspb.2001.1873

Wesley-Hunt, 2005, The morphological diversification of carnivores in North America, Paleobiology, 31, 35, 10.1666/0094-8373(2005)031<0035:TMDOCI>2.0.CO;2

Wesley-Hunt, 2005, Phylogeny of the Carnivora: basal relationships among the carnivoramorphans, and assessment of the position of “Miacoidea” relative to crown-clade Carnivora, J. Syst. Palaeontol., 3, 1, 10.1017/S1477201904001518

Wozencraft, 1993, Order Carnivora, Mammal species of the World: A taxonomic and geographic reference, Pages 279

Wyss, 1993, A phylogenetic analysis and definition of the Carnivora, Mammal phylogeny: Placentals, Pages 32, 10.1007/978-1-4613-9246-0_4

Yoder, 2003, Single origin of Malagasy Carnivora from an African ancestor, Nature, 421, 734, 10.1038/nature01303

Yu, 2004, Phylogenetic relationships within mammalian Order Carnivora indicated by sequences of two nuclear DNA genes, Mol. Phylogenet. Evol., 33, 694, 10.1016/j.ympev.2004.08.001

Yu, 2004, Phylogeny of the bears (Ursidae) based on nuclear and mitochondrial genes, Mol. Phylogenet. Evol., 32, 480, 10.1016/j.ympev.2004.02.015