Analysis of the proteome of Mycobacterium tuberculosis in silico
Tài liệu tham khảo
Goffeau, 1994, Genes in search of functions, Nature (London), 369, 101, 10.1038/369101a0
Cole, 1998, Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence, Nature (London), 393, 537, 10.1038/31159
Cole, 1998, Analysis of the genome of Mycobacterium tuberculosis H37Rv, 160
Altschul, 1990, A basic local alignment search tool, J Mol Biol, 215, 403, 10.1016/S0022-2836(05)80360-2
Wootton, 1994, Non-globular domains in protein sequences: automated segmentation using complexity measures, Comput & Chem, 18, 269, 10.1016/0097-8485(94)85023-2
Tekaia, 1999, Pervasiveness of gene conservation and persistence of duplicatges in cullular genomes, J Mol Evol, 49, 10.1007/PL00006580
Greenacre, 1984
Benzecri, 1973
Bailey, T, L, Elkan, C, Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, 1994, 28, 36
Bailey, 1998, Combining evidence using p-values: application to sequence homology searches, Bioinformatics, 14, 45, 10.1093/bioinformatics/14.1.48
Devereux, 1984, A comprehensive set of sequence analysis programs for the VAX, Nucl Acids Res, 12, 387, 10.1093/nar/12.1Part1.387
Pearson, 1988, Improved tools for biological sequence comparisons, Proc Natl Acad USA, 85, 2444, 10.1073/pnas.85.8.2444
Nielsen, 1997, Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites, Prot Eng, 10, 1, 10.1093/protein/10.1.1
Sonnhammer, E, L L, von Heijne, G, Krogh, A, A hidden Markov model for predicting transmembrane helices in protein sequences. Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology, 1998, 175, 182
Thompson, 1994, Improving the sensitivity of progressive multiple alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Res, 22, 4673, 10.1093/nar/22.22.4673
Felsenstein, 1989, PHYLIP – Phylogeny Inference Package (Version 3.2), Cladistics, 5, 164
Poulet, 1995, Characterisation of the polymorphic GC-rich repetitive sequence (PGRS) present in Mycobacterium tuberculosis, Arch Microbiol, 163, 87, 10.1007/BF00381781
Ross, 1992, Molecular cloning of a highly repeated DNA element from Mycobacterium tuberculosis and its use as an epidemiological tool, J Clin Microbiol, 30, 942, 10.1128/JCM.30.4.942-946.1992
van Soolingen, 1993, Comparison of various repetitive DNA elements as genetic markers for strain differentiation and epidemiology ofMycobacterium tuberculosis, J Clin Microbiol, 31, 1987, 10.1128/JCM.31.8.1987-1995.1993
Grosset, 1993, Bacteriology of tuberculosis, 49
Gordon, 1999, New insertion sequences and a novel repeated sequence in the genome of Mycobacterium tuberculosis H37Rv, Microbiology, 145, 881, 10.1099/13500872-145-4-881
Lonetto, 1992, The σ70family; Sequence conservation and evolutionary relationships, J Bacteriol, 174, 3843, 10.1128/jb.174.12.3843-3849.1992
Gomez, 1998, The sigma factors of Mycobacterium tuberculosis, Tubercle Lung Dis, 78, 175, 10.1016/S0962-8479(97)90024-1
Barry, 1998, Mycolic acids: Structure, biosynthesis, and physiological functions, Prog Lipid Res, 37, 143, 10.1016/S0163-7827(98)00008-3
Munro, 1996, Bacterial cytochromes P-450, Mol Microbiol, 20, 1115, 10.1111/j.1365-2958.1996.tb02632.x
Arand, 1994, Sequence similarity of mammalian epoxide hydrolases to the bacterial haloalkane dehalogenase and other related proteins, FEBS Lett, 338, 251, 10.1016/0014-5793(94)80278-5
Hofmann, 1998, Structural investigation of the cofactor-free chloroperoxidases, J Mol Biol, 279, 889, 10.1006/jmbi.1998.1802
Pelletier, 1995, A catalytic triad is required by the non-heme haloperoxidases to perform halogenation, Biochim Biophys Acta, 1250, 149, 10.1016/0167-4838(95)00055-Y
Pelletier, 1995, A bacterial esterase is homologous with non-haem haloperoxidases and displays brominating activity, Microbiology, 10.1099/13500872-141-2-459
Saier, 1994, Two novel families of bacterial membrane proteins concerned with nodulation, cell division and transport, Mol Microbiol, 11, 841, 10.1111/j.1365-2958.1994.tb00362.x
Paulsen, 1996, Proton-dependent multidrug efflux systems, Microbiol Rev, 60, 575, 10.1128/MR.60.4.575-608.1996
Kunst, 1997, The complete genome sequence of the gram-positive bacterium Bacillus subtilis, Nature (London), 390, 249, 10.1038/36786
Pao, 1998, Major facilitator superfamily, Microbiology and Molecular Biology Reviews, 62, 1, 10.1128/MMBR.62.1.1-34.1998
Paulsen, 1998, Microbial genome analyses: global comparisons of transport capabilities based on phylogenies, bioenergetics and substrate specificities, J Mol Biol, 277, 573, 10.1006/jmbi.1998.1609
Ainsa, 1998, Molecular cloning and characterization of Tap, a putative multidrug efflux pump present in Mycobacterium fortuitum and Mycobacterium tuberculosis, J Bacteriol, 180, 5836, 10.1128/JB.180.22.5836-5843.1998
Kanamaru, 1994, A copper-transporting P-type ATPase found in the thylakoid membrane of the cyanobacterium Synechococcus species PCC7942, Mol Microbiol, 13, 369, 10.1111/j.1365-2958.1994.tb00430.x
Arruda, 1993, Cloning of an M. tuberculosis DNA fragment associated with entry and survival inside cells, Science, 261, 1454, 10.1126/science.8367727
Elhay, 1998, Delayed-type hypersensitivity responses to ESAT-6 and MPT64 from Mycobacterium tuberculosis in the guinea pig, Infect Immun, 66, 3454, 10.1128/IAI.66.7.3454-3456.1998
Lalvani, 1998, Human cytolytic and interferon gamma-secreting CD8+ T lymphocytes specific for Mycobacterium tuberculosis, Proceedings of the National Academy of Sciences of the United States of America, 95, 270, 10.1073/pnas.95.1.270
Harboe, 1996, Evidence for occurrence of the ESAT-6 protein in Mycobacterium tuberculosis and virulent Mycobacterium bovis and for its absence in Mycobacterium bovis BCG, Infect Immun, 64, 16, 10.1128/IAI.64.1.16-22.1996
Mahairas, 1996, Molecular analysis of genetic differences between Mycobacterium bovis BCG and virulent M. bovis, J Bacteriol, 178, 1274, 10.1128/jb.178.5.1274-1282.1996
Gordon, 1999, Identification of variable regions in the genomes of tubercle bacilli using bacterial artificial chromosome arrays, Mol Microbiol, 32, 643, 10.1046/j.1365-2958.1999.01383.x
Chubb, 1998, Identification of Mycobacterium tuberculosis signal sequences that direct the export of a leaderless beta-lactamase gene product in Escherichia coli, Microbiology, 144, 1619, 10.1099/00221287-144-6-1619
Pugsley, 1993, The complete general secretory pathway in gram-negative bacteria, Microbiol Rev, 57, 50, 10.1128/MR.57.1.50-108.1993
Brennan, 1994, Proteins and antigens of Mycobacterium tuberculosis, 307
Berthet, 1998, A Mycobacterium tuberculosis operon encoding ESAT-6 and a novel low-molecular-mass culture filtrate protein (CFP-10), Microbiology, 144, 3195, 10.1099/00221287-144-11-3195
Finlay, 1997, Common themes in microbial pathogenicity revisited, Microbiol Mol Biol Rev, 61, 136, 10.1128/.61.2.136-169.1997
Nissen, 1997, Ribosomally synthesized antimicrobial peptides: their function, structure, biogenesis, and mechanism of action, Arch Microbiol, 167, 67, 10.1007/s002030050418
Havarstein, 1995, A family of bacteriocin ABC transporters carry out proteolytic processing of their substrates concomitant with export, Mol Microbiol, 16, 229, 10.1111/j.1365-2958.1995.tb02295.x
Menard, 1994, The secretion of the Shigella flexneri Ipa invasins is activated by epithelial cells and controlled by IpaB and IpaD, Embo Journal, 13, 5293, 10.1002/j.1460-2075.1994.tb06863.x
Menozzi, 1998, Molecular characterization of the mycobacterial heparin-binding hemagglutinin, a mycobacterial adhesin, Proc Natl Acad Sci USA, 95, 12625, 10.1073/pnas.95.21.12625
Weldingh, 1998, Two-dimensional electrophoresis for analysis of Mycobacterium tuberculosis culture filtrate and purification and characterization of six novel proteins, Infect Immun, 66, 349, 10.1128/IAI.66.8.3492-3500.1998
