Analysis of Nucleosome Structure in Polyacrylamide Gel by the Förster Resonance Energy Transfer Method
Tóm tắt
Từ khóa
Tài liệu tham khảo
Valieva, M.E., Armeev, G.A., Kudryashova, K.S., Gerasimova, N.S., Shaytan, A.K., Kulaeva, O.I., McCullough, L.L., Formosa, T., Georgiev, P.G., Kirpichnikov, M.P., Studitsky, V.M., and Feofanov, A.V., Large-scale ATP-independent nucleosome unfolding by a histone chaperone, Nat. Struct. Mol. Biol., 2016, vol. 23, no. 12, pp. 1111–1116.
Dechassa, M.L., Sabri, A., Pondugula, S., Kassabov, S.R., Chatterjee, N., Kladde, M.P., and Bartholomew, B., SWI/SNF has intrinsic nucleosome disassembly activity that is dependent on adjacent nucleosomes, Mol. Cell, 2010, vol. 38, no. 4, pp. 590–602.
Kulaeva, O.I., Hsieh, F.K., and Studitsky, V.M., RNA polymerase complexes cooperate to relieve the nucleosomal barrier and evict histones, Proc. Natl. Acad. Sci. U.S.A., 2010, vol. 107, no. 25, pp. 11325–11330.
Chang, H.W., Pandey, M., Kulaeva, O.I., Patel, S.S., and Studitsky, V.M., Overcoming a nucleosomal barrier to replication, Sci. Adv., 2016, vol. 2, no. 11.
Pestov, N.A., Gerasimova, N.S., Kulaeva, O.I., and Studitsky, V.M., Structure of transcribed chromatin is a sensor of DNA damage, Sci. Adv., 2015, vol. 1, no. 6.
Luger, K., Mäder, A.W., Richmond, R.K., Sargent, D.F., and Richmond, T.J., Crystal structure of the nucleosome core particle at 2.8 A resolution, Nature, 1997, vol. 389, no. 6648, pp. 251–260.
Gaykalova, D.A., Kulaeva, O.I., Volokh, O., Shaytan, A.K., Hsieh, F.K., Kirpichnikov, M.P., Sokolova, O.S., and Studitsky, V.M., Structural analysis of nucleosomal barrier to transcription, Proc. Natl. Acad. Sci. U.S.A., 2015, vol. 112, no. 43, pp. 5787–5795.
Kudryashova, K.S., Chertkov, O.V., Nikitin, D.V., Pestov, N.A., Kulaeva, O.I., Efremenko, A.V., Solonin, A.S., Kirpichnikov, M.P., Studitsky, V.M., and Feofanov, A.V., Preparation of mononucleosomal templates for analysis of transcription with RNA polymerase using spFRET, Methods Mol. Biol., 2015, vol. 1288, pp. 395–412.
Buning, R., Kropff, W., Martens, K., and van Noort, J., spFRET reveals changes in nucleosome breathing by neighboring nucleosomes, J. Phys. Condens. Matter, 2015, vol. 27, no. 6.
Gansen, A., Tóth, K., Schwarz, N., and Langowski, J., Opposing roles of H3- and H4-acetylation in the regulation of nucleosome structure—a FRET study, Nucleic Acid Res., 2015, vol. 43, no. 3, pp. 1433–1443.
Kudryashova, K.S., Nikitin, D.V., Chertkov, O.V., Gerasimova, N.S., Valieva, M.E., Studitsky, V.M., and Feofanov, A.V., Development of fluorescently labeled mononucleosomes for the investigation of transcription mechanisms by single complex microscopy, Moscow Univ. Biol. Sci. Bull., 2015, vol. 70, no. 4, pp. 189–193.
Sultanov, D., Gerasimova, N., Kudryashova, K., Maluchenko, N., Kotova, E., Langelier, M.-F., Pascal, J., Kirpichnikov, M., Feofanov, A., and Studitsky, V., Unfolding of core nucleosomes by PARP-1 revealed by spFRET microscopy, AIMS Genet., 2017, vol. 4, no. 1, pp. 21–31.
Valieva, M.E., Gerasimova, N.S., Kudryashova, K.S., Kozlova, A.L., Kirpichnikov, M.P., Hu, Q., Botuyan, M.V., Mer, G., Feofanov, A.V., and Studitsky, V.M., Stabilization of nucleosomes by histone tails and by FACT revealed by spFRET microscopy, Cancers (Basel), 2017, vol. 9, no. 1, p. 3. doi doi 10.3390/cancers9010003
Shimahara, H., Hirano, T., Ohya, K., Matsuta, S., Seeram, S.S., and Tate, S., Nucleosome structural changes induced by binding of non-histone chromosomal proteins HMGN1 and HMGN2, FEBS Open Bio, 2013, vol. 3, pp. 184–191.
Kulaeva, O.I., Gaykalova, D.A., Pestov, N.A., Golovastov, V.V., Vassylyev, D.G., Artsimovitch, I., and Studitsky, V.M., Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II, Nat. Struct. Mol. Biol., 2009, vol. 16, no. 12, pp. 1272–1278.
Gaykalova, D.A., Kulaeva, O.I., Bondarenko, V.A., and Studitsky, V.M., Preparation and analysis of uniquely positioned mononucleosomes, Methods Mol. Biol., 2009, vol. 523, pp. 109–123.