Analysis of Lhcb gene family in rapeseed (Brassica napus L.) identifies a novel member “BnLhcb3.4” modulating cold tolerance

Environmental and Experimental Botany - Tập 198 - Trang 104848 - 2022
Yi Zhang1, Ali Raza1,2, He Huang1, Wei Su1, Dan Luo1, Liu Zeng1, Xiaoyu Ding1, Yong Cheng1, Zhaofeng Liu3, Quanan Li3, Yan Lv1, Xiling Zou1
1Key Lab of Biology and Genetic Improvement of Oil Crops, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences (CAAS), Wuhan 430062, China
2Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Oil Crops Research Institute, Center of Legume Crop Genetics and Systems Biology/College of Agriculture, Fujian Agriculture and Forestry University (FAFU), Fuzhou 350002, China
3Taiyanghe Township Agricultural Service Center, Enshi 445000, China

Tài liệu tham khảo

Adie, 2007, ABA is an essential signal for plant resistance to pathogens affecting JA biosynthesis and the activation of defenses in Arabidopsis, Plant Cell, 19, 1665, 10.1105/tpc.106.048041 Aleman, 2016, An ABA-increased interaction of the PYL6 ABA receptor with MYC2 transcription factor: a putative link of ABA and JA signaling, Scientific reports, 6, 1, 10.1038/srep28941 Andersson, 2003, Absence of the Lhcb1 and Lhcb2 proteins of the light-harvesting complex of the photosystem Ⅱ: effects on photosynthesis, grana stacking and fitness, Plant J., 35, 350, 10.1046/j.1365-313X.2003.01811.x Brelsford, 2019, Do UV‐A radiation and blue light during growth prime leaves to cope with acute high light in photoreceptor mutants of Arabidopsis thaliana.?, Physiol. Plant., 165, 537, 10.1111/ppl.12749 Chahoub, 2014, Early allopolyploid evolution in the post Neolithic Brassica napus oilseed genome, Sci. Plant Genet., 345, 950 Chinnusamy, 2004, Molecular genetic perspectives on cross‐talk and specificity in abiotic stress signalling in plants, Journal of experimental botany, 55, 225, 10.1093/jxb/erh005 Christensen, 2007, Regional climate projections, 847 Cutler, 2010, Abscisic acid: emergence of a core signaling network, Annual review of plant biology, 61, 651, 10.1146/annurev-arplant-042809-112122 Dai, 2018, The transcription factor Fc WRKY 40 of Fortunella crassifolia functions positively in salt tolerance through modulation of ion homeostasis and proline biosynthesis by directly regulating SOS 2 and P5 CS 1 homologs, New Phytologist, 219, 972, 10.1111/nph.15240 Damkjær, 2009, The photosystem II light-harvesting protein Lhcb3 affects the macrostructure of photosystem II and the rate of state transitions in Arabidopsis, Plant Cell., 21, 3245, 10.1105/tpc.108.064006 Deng, 2014, Heterology expression of the tomato LeLhcb2 gene confers elevated tolerance to chilling stress in transgenic tobacco, Plant Physiol. Biochem., 80, 318, 10.1016/j.plaphy.2014.04.017 Engelken, 2010, Taxonomic distribution and origins of the extended LHC (light-harvesting complex) antenna protein superfamily, BMC Evol. Biol., 10, 233, 10.1186/1471-2148-10-233 Fuchs, 2013, Type 2C protein phosphatases in plants, The FEBS journal, 280, 681, 10.1111/j.1742-4658.2012.08670.x Fujji, 2009, In vitro reconstitution of an abscisic acid signaling pathway, Nature, 462, 660, 10.1038/nature08599 Guo, 2018, Cold signaling in plants: Insights into mechanisms and regulation, Journal of integrative plant biology, 60, 745, 10.1111/jipb.12706 Huang, 2019, The Arabidopsis transcriptome responds specifically and dynamically to high light stress, Cell Rep., 29, 4186, 10.1016/j.celrep.2019.11.051 Huang, 2020, Brassica napus reductase gene dissected by associative transcriptomics enhances plant adaption to freezing stress, Front Plant Sci., 11, 971, 10.3389/fpls.2020.00971 Kami, 2010, Light-regulated plant growth and development, Current topics in developmental biology, 91, 29, 10.1016/S0070-2153(10)91002-8 Kumar, 2016, MEGA7:molecular evolutionary genetics analysis version 7.0 for bigger datasets, Mol. Biol. Evol., 33, 1870, 10.1093/molbev/msw054 Lee, 2015, The MYB96-HHP module integrates cold and abscisic acid signaling to activate the CBF-COR pathway in Arabidopsis, Plant J., 82, 962, 10.1111/tpj.12866 Liu, 2019, A new light on photosystem II maintenance in oxygenic photosynthesis, Front. Plant Sci., 10, 975, 10.3389/fpls.2019.00975 Liu, 2019, Phosphorylation-guarded light-harvesting complex II contributes to broad-spectrum blast resistance in rice, Proc. Natl. Acad. Sci. U.S.A., 116, 10.1073/pnas.1905123116 Livak, 2001, Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCt method, Methods, 25, 402, 10.1006/meth.2001.1262 Lv, 2016, New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome‐wide association analysis, Plant, cell & environment, 39, 556, 10.1111/pce.12635 Mehmood, 2021, Integrated analysis of transcriptomics and proteomics provides insights into the molecular regulation of cold response in Brassica napus, Environ. Exp. Bot., 187, 10.1016/j.envexpbot.2021.104480 Mizoi, 2012, AP2/ERF family transcription factors in plant abiotic stress responses, Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms, 1819, 86, 10.1016/j.bbagrm.2011.08.004 Mubarik, 2021, A manipulative interplay between positive and negative regulators of phytohormones: a way forward for improving drought tolerance in plants, Physiol. Plant., 172, 1269, 10.1111/ppl.13325 Pieterse, 2012, Hormonal modulation of plant immunity, Annu Rev. Cell Dev. Biol., 28, 489, 10.1146/annurev-cellbio-092910-154055 Raza, 2021, Eco-physiological and biochemical responses of rapeseed (Brassica napus L.) to abiotic stresses: consequences and mitigation strategies, J. Plant Growth Regul., 40, 1368, 10.1007/s00344-020-10231-z Raza, 2021, Can omics deliver temperature resilient ready-to-grow crops?, Crit. Rev. Biotechnol., 41, 1209, 10.1080/07388551.2021.1898332 Raza, 2021, Integrated analysis of metabolome and transcriptome reveals insights for cold tolerance in Rapeseed (Brassica napus L.), Front. Plant Sci., 12, 10.3389/fpls.2021.721681 Raza, 2021, Omics: the way forward to enhance abiotic stress tolerance in Brassica napus L, GM Crops Food, 12, 251, 10.1080/21645698.2020.1859898 Rochaix, 2019, LHC-like proteins involved in stress responses and biogenesis/repair of the photosynthetic apparatus, Biochem. J., 476, 581, 10.1042/BCJ20180718 Sabagh, 2021, Potential role of plant growth regulators in administering crucial processes against abiotic stresses, Front. Agron., 3, 10.3389/fagro.2021.648694 Staneloni, 2008, Abscisic acid, high-light, and oxidative stress down-regulate a photosynthetic gene via a promoter motif not involved in phytochrome-mediated transcriptional regulation, Mol. Plant, 1, 75, 10.1093/mp/ssm007 Sun, 2017, The high-quality genome of Brassica napus cultivar ‘ZS11’ reveals the introgression history in semi-winter morphotype, Plant J., 92, 452, 10.1111/tpj.13669 Umate, 2010, Genome-wide analysis of the family of light-harvesting chlorophyll a/b-binding proteins in Arabidopsis and rice, Plant Signal. Behav., 5, 1537, 10.4161/psb.5.12.13410 Verma, 2016, Plant hormone-mediated regulation of stress responses, BMC Plant Biol., 16 Voorrips, 2002, MapChart: software for the graphical presentation of linkage maps and QTLs, J. Hered., 93, 77, 10.1093/jhered/93.1.77 Xia, 2012, Allelic variations of a light harvesting chlorophyll a/b-binding protein gene (Lhcb1) associated with agronomic traits in barlely, PLos One, 7, 10.1371/journal.pone.0037573 Xu, 2012, Light-harvesting chlorophyll a/b-binding proteins are required for stomatal response to abscisic acid in Arabidopsis, J. Exp. Bot., 63, 1095, 10.1093/jxb/err315 Yamaguchi-Shinozaki, 2006, Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses, Annual Review of Plant Biology, 57, 781, 10.1146/annurev.arplant.57.032905.105444 Yan, 2019, Physiological and molecular responses to cold stress in rapeseed (Brassica napus L.), J. Integr. Agric., 18, 2742, 10.1016/S2095-3119(18)62147-1 Yoshida, 2015, Four A rabidopsis AREB/ABF transcription factors function predominantly in gene expression downstream of SnRK2 kinases in abscisic acid signalling in response to osmotic stress, Plant, cell & environment, 38, 35, 10.1111/pce.12351 Zou, 2018, Mining gene families in the castor bean genome, 135 Zou, 2019, Genomics analysis of the light-harvesting chlorophyll a/b-binding (Lhc) superfamily in cassava (Manihot esculenta Crantz), Gene, 10.1016/j.gene.2019.03.071