Phân tích DNA methyl hóa trong các mô và giai đoạn phát triển của ngọc trai Pinctada fucata

Baurens FC, Bonnot F, Bienvenu D, Causse S, Legavre T (2003) Using SD-AFLP and MSAP to assess CCGG methylation in the banana genome. Plant Mol Biol Rep 21:339–348 Cervera MT, Ruiz-Garcia L, Martinez-Zapater J (2002) Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol Genet Genomics 268:543–552 Clark SJ, Harrison J, Frommer M (1995) CpNpG methylation in mammalian cells. Nat Genet 10:20–27 Colot V, Rossignol JL (1999) Eukaryotic DNA methylation as an evolutionary device. BioEssays 21:402–411 Daxinger L, Whitelaw E (2012) Understanding transgenerational epigenetic inheritance via the gametes in mammals. Nat Rev Genet 13:153–162 Field LM, Blackman RL (2003) Insecticide resistance in the aphid Myzus persicae (Sulzer): chromosome location and epigenetic effects on esterase gene expression in clonal lineages. Biol J Linn Soc 79:107–113 Finnegan EJ, Peacock WJ, Dennis ES (1996) Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development. Proc Natl Acad Sci USA 93:8449–8454 Finnegan EJ, Genger RK, Peacock WJ, Dennis ES (1998) DNA methylation in plants. Annu Rev Plant Biol 49:223–247 Finnegan EJ, Peacock WJ, Dennis ES (2000) DNA methylation, a key regulator of plant development and other processes. Curr Opin Genet Dev 10:217–223 Fulneček J, Kovařík A (2014) How to interpret methylation sensitive amplified polymorphism (MSAP) profiles? BMC Genet 15:2 Gavery MR, Roberts SB (2010) DNA methylation patterns provide insight into epigenetic regulation in the Pacific oyster (Crassostrea gigas). BMC Genom 11:483 Gavery MR, Roberts SB (2013) Predominant intragenic methylation is associated with gene expression characteristics in a bivalve mollusc. Peer J 1:e215 He MX, Guan YY, Yuan T, Zhang HY (2008) Realized heritability and response to selection for shell height in the pearl oyster Pinctada fucata (Gould). Aquac Res 39:801–805 Hulata G (2001) Genetic manipulations in aquaculture: a review of stock improvement by classical and modern technologies. Genetica 111:155–173 Jiang L, Zhang J, Wang JJ, Wang L, Zhang L, Li G, Yang X, Ma X, Sun X, Cai J et al (2013a) Sperm, but not oocyte, DNA methylome is inherited by zebrafish early embryos. Cell 153:773–784 Jiang Q, Li Q, Yu H, Kong LF (2013b) Genetic and epigenetic variation in mass selection populations of Pacific oyster Crassostrea gigas. Genes Genom 35:641–647 Jones PA, Takai D (2001) The role of DNA methylation in mammalian epigenetics. Science 293:1068–1070 Lei H, Oh SP, Okano M, Juttermann R, Goss KA, Jaenisch R, Li E (1996) De novo DNA cytosine methyltransferase activities in mouse embryonic stem cells. Development 122:3195–3205 Li E, Beard C, Jaenisch R (1993) Role for DNA methylation in genomic imprinting. Nature 366:362–365 Li A, Song WQ, Chen CB, Zhou YN, Qi LW, Wang CG (2013) DNA methylation status is associated with the formation of heterosis in Larix kaempferi intraspecific hybrids. Mol Breed 31:463–475 Liu WG, Huang XD, Lin JS, He MX (2012) Seawater acidification and elevated temperature affect gene expression patterns of the pearl oyster Pinctada fucata. PLoS one 7:e33679 Lu YL, Rong TZ, Cao MJ (2008) Analysis of DNA methylation in different maize tissues. J Genet Genomics 35:41–48 Miyazaki T, Goto K, Kobayashi T, Kageyama T, Miyata M (1999) Mass mortalities associated with a virus disease in Japanese pearl oysters Pinctada fucata martensii. Dis Aquat Org 37:1–12 Mohandas T, Sparkes R, Shapiro L (1981) Reactivation of an inactive human X chromosome: evidence for X inactivation by DNA methylation. Science 211:393–396 Pontecorvo G, De Felice B, Carfagna M (2000) Novel methylation at GpC dinucleotide in the fish Sparus aurata genome. Mol Biol Rep 27:225–230 Razin A, Riggs AD (1980) DNA methylation and gene function. Science 210:604–610 Reik W, Dean W, Walter J (2001) Epigenetic reprogramming in mammalian development. Science 293:1089–1093 Reyna-Lopez G, Simpson J, Ruiz-Herrera J (1997) Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphisms. Mol Gen Genet 253:703–710 Riviere G, Wu GC, Fellous A, Goux D, Sourdaine P, Favrel P (2013) DNA methylation is crucial for the early development in the oyster C. gigas. Mar Biotechnol 15:739–753 Ruiz-García L, Cervera MT, Martínez-Zapater JM (2005) DNA methylation increases throughout Arabidopsis development. Planta 222:301–306 Sha AH, Lin XH, Huang JB, Zhang DP (2005) Analysis of DNA methylation related to rice adult plant resistance to bacterial blight based on methylation-sensitive AFLP (MSAP) analysis. Mol Genet Genomics 273:484–490 Suzuki MM, Kerr AR, De Sousa D, Bird A (2007) CpG methylation is targeted to transcription units in an invertebrate genome. Genome Res 17:625–631 Wada KT, Komaru A (1994) Effect of selection for shell coloration on growth rate and mortality in the Japanese pearl oyster, Pinctada fucata martensii. Aquaculture 125:59–65 Wada KT, Komaru A (1996) Color and weight of pearls produced by grafting the mantle tissue from a selected population for white shell color of the Japanese pearl oyster Pinctada fucata martensii (Dunker). Aquaculture 142:25–32 Wang AM, Wang Y, Gu ZF, Li SF, Shi YH, Guo XM (2011) Development of expressed sequence tags from the pearl oyster, Pinctada martensii Dunker. Mar Biotechnol 13:275–283 Wu SZ, Guan YY, Huang XD, He MX (2013) Development of 25 novel microsatellite loci and genetic variation analysis in breeding populations of the pearl oyster, Pinctada fucata. J World Aquac Soc 44:600–609 Xiong L, Xu C, Maroof MS, Zhang Q (1999) Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique. Mol Gen Genet 261:439–446 Yang C, Zhang MJ, Niu WP, Yang RJ, Zhang YH, Qiu ZY, Sun BX, Zhao ZH (2011) Analysis of DNA methylation in various swine tissues. PLoS one 6:e16229 Yu DH, Chu KH (2006) Low genetic differentiation among widely separated populations of the pearl oyster Pinctada fucata as revealed by AFLP. J Exp Mar Biol Ecol 333:140–146